mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.6% | 90.0 / 64.1 | 98 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 52 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2729955 = | NA (NA) | 8 (0.110) | 7/268 | 9.0 | NA | noncoding (1203/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 224973 | 30 (0.400) | 7 (0.100) | 6/268 | 9.6 | 19.6% | noncoding (1203/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 1494123 = | 78 (1.040) | 5 (0.070) | 5/266 | 10.2 | 6.5% | intergenic (+13/+25) | trg/ydcI | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor/putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | 1494141 = | 69 (0.970) | intergenic (+31/+7) | trg/ydcI | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor/putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 274384 = | NA (NA) | 5 (0.070) | 5/274 | 10.4 | NA | noncoding (766/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274422 = | NA (NA) | noncoding (728/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 3411602 | 79 (1.050) | 4 (0.060) | 4/258 | 10.6 | 5.3% | intergenic (+35/‑51) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 3411616 | 70 (1.010) | intergenic (+49/‑37) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 3383295 | 75 (1.000) | 6 (0.090) | 4/256 | 10.6 | 7.9% | intergenic (+28/+35) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding |
| ? | NC_000913 | = 3383301 | 72 (1.050) | intergenic (+34/+29) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | = 1287084 | 61 (0.810) | 5 (0.080) | 3/240 | 10.8 | 8.5% | noncoding (153/171 nt) | rttR | rtT sRNA, processed from tyrT transcript |
| ? | NC_000913 | 1287557 = | 56 (0.870) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | 4067526 = | 79 (1.050) | 4 (0.060) | 4/268 | 10.9 | 5.2% | coding (1751/2037 nt) | yihQ | putative sulpholipid alpha‑glucosidase; alpha‑glucosyl fluoride glucosidase |
| ? | NC_000913 | 4067557 = | 69 (0.960) | coding (1720/2037 nt) | yihQ | putative sulpholipid alpha‑glucosidase; alpha‑glucosyl fluoride glucosidase | |||||
| * | ? | NC_000913 | 3564096 = | 88 (1.170) | 4 (0.060) | 4/268 | 10.9 | 4.4% | intergenic (‑91/+38) | yzgL/glgP | pseudogene, periplasmic solute binding protein homology/glycogen phosphorylase |
| ? | NC_000913 | 3564118 = | 89 (1.240) | intergenic (‑113/+16) | yzgL/glgP | pseudogene, periplasmic solute binding protein homology/glycogen phosphorylase | |||||
| * | ? | NC_000913 | 3520371 = | 85 (1.130) | 4 (0.060) | 4/266 | 10.9 | 4.6% | coding (333/1239 nt) | hofQ | DNA catabolic putative fimbrial transporter |
| ? | NC_000913 | 3520402 = | 84 (1.180) | coding (302/1239 nt) | hofQ | DNA catabolic putative fimbrial transporter | |||||