Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)76 (1.260) 63/282 0.0 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)78 (1.300) 58/282 0.0 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 155 total aligned reads displayed.

GATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGG  >  NC_000913/1292890‑1293171
                                                                                                                                              |                                                                                                                                           
gcgctgatggccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaacacaccatcatacactaaatcagtaagttggcagcatcacct                                                                                                                                             >  2:333729‑M1/143‑143 (MQ=255)
 aTGTTGTTCAGAATTTTAAGTGCTCCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTAtttt                                                                                                                                            <  1:234749/143‑1 (MQ=255)
   gttgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTtgt                                                                                                                                          >  2:202988/1‑143 (MQ=255)
   ctgctgtccggcggtgctcttgccgttacgcgctaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagaacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTtgt                                                                                                                                          >  2:310359‑M1/140‑143 (MQ=255)
   ctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTtgt                                                                                                                                          >  1:729125‑M1/140‑143 (MQ=255)
    ttgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTtgtg                                                                                                                                         >  2:872299/1‑143 (MQ=255)
     gatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgc                                                                                                                                        <  1:139963‑M1/6‑1 (MQ=255)
       tgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccg                                                                                                                                      <  1:534971‑M1/8‑1 (MQ=255)
        tCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGg                                                                                                                                     >  2:100712‑M2/1‑142 (MQ=255)
        tCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGg                                                                                                                                     >  2:990585‑M2/1‑142 (MQ=255)
           gAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggta                                                                                                                                  <  2:139147‑M2/143‑5 (MQ=255)
               tttAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatga                                                                                                                              >  1:994176‑M2/1‑135 (MQ=255)
                gtgtttttgccgttacgcaccgccccgtcagtagctgaacagtagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaataaat                                                                                                                             >  2:616879‑M1/127‑143 (MQ=255)
                  aaGTGCTTCGCTCATTGTAGTCATCGCAAACTTACATAGGGGTGGTTTCATGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactc                                                                                                                           >  1:404875‑M2/1‑132 (MQ=255)
                   aGTGCTGCGCTCTTTGTAGTAATCTCAAACTTATATTGGGGTTGTTTGTTGAGGTAATAATAGAGCCTGAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcc                                                                                                                          >  1:861293‑M2/1‑131 (MQ=255)
                    ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATaagtatat                                                                                                                         <  1:886207‑M1/21‑3 (MQ=255)
                    ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGACAATAAATATCt                                                                                                                         <  2:465779‑M1/21‑1 (MQ=255)
                      ttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCttt                                                                                                                       >  1:601071‑M1/121‑143 (MQ=255)
                      gCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGcgtaatgactccaac                                                                                                                       <  2:152172‑M2/143‑16 (MQ=255)
                          cgttacgcaccgccccgtcagtaggtgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCAt                                                                                                                   <  1:394957‑M1/27‑1 (MQ=255)
                          cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCAt                                                                                                                   >  1:98126‑M1/117‑143 (MQ=255)
                          cGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatggctccaactcat                                                                                                                   <  1:328838‑M2/143‑20 (MQ=255)
                            cTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTGAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattg                                                                                                                 >  1:719325‑M2/1‑122 (MQ=255)
                             tacgcacccccccgtcagtagctgaacaggagggacagctgatagaaagagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaaa                                                                                                                >  1:246200‑M1/114‑143 (MQ=255)
                                 caccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCACTAAATATCTTTTCATAAAATTa                                                                                                            <  1:711551‑M1/34‑1 (MQ=255)
                                   ccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGc                                                                                                          <  1:183482‑M1/36‑1 (MQ=255)
                                    caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaagacaccatcatgcactacatcagtaagttggccgcctccccTTGTGCCGCCCATAGCTATCTTTTCATAAAATTAgca                                                                                                         <  1:1734‑M1/37‑2 (MQ=255)
                                    caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGcc                                                                                                         <  1:709365‑M1/37‑1 (MQ=255)
                                    caccccgtcagtagctgaacaggagggacagatgatagaaacagaagccactagagcacctcaaaaacaccatcatacaataaatcagtaagatggcagaatcaccTTGTACCACCAATAAAAATCTTTTCATAAAattacac                                                                                                         <  2:672628‑M1/37‑4 (MQ=255)
                                    cacaccggcagtatctgaacaggagggacagctgatacaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGcc                                                                                                         >  2:933821‑M1/107‑143 (MQ=255)
                                    agtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtt                                                                                                         >  1:883347‑M2/1‑114 (MQ=255)
                                          gtcagtagctgaacaggagggacagctgatagagacgtaggccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGaaaa                                                                                                   <  2:388899‑M1/43‑1 (MQ=255)
                                            cAATCTTATATTGGGGTGGTTGGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttc                                                                                                 >  1:605647‑M2/1‑106 (MQ=255)
                                             aaaGTTATATTGGGGTAGTTTGTTGAGGTAATAATAGAGTCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttca                                                                                                >  1:491486‑M2/1‑105 (MQ=255)
                                                cgtatattGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagat                                                                                             >  2:300401‑M2/3‑102 (MQ=255)
                                                 ttATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATATTGGGCCGggtaatgactcgaacttattgatcgtgatctatggtcatata                                                                                            <  2:874342‑M2/143‑43 (MQ=255)
                                                  tataTTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataa                                                                                           <  1:958512‑M2/143‑44 (MQ=255)
                                                     atTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgc                                                                                        >  2:204264‑M2/1‑97 (MQ=255)
                                                      ttGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                       >  2:491363‑M2/1‑96 (MQ=255)
                                                      acaggagggacagctgatagaaacaggagccactggagcacctccaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCatat                                                                                       >  1:54449‑M1/89‑143 (MQ=255)
                                                       tGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcccacttattgatagtgttttatgttcagataatgccc                                                                                      <  1:822096‑M2/143‑49 (MQ=255)
                                                       catgagggacagctgatagaatcagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCAtata                                                                                      >  2:500838‑M1/88‑143 (MQ=255)
                                                       caggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGAGCCGACCACAACAAACTTTTCTTAAAATTAGCCAGAAAAGACGCGGCAtata                                                                                      >  1:749504‑M1/88‑143 (MQ=255)
                                                         ggagggacagctgatagaaacagaagccactggaggacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAAGCGGCATATAGc                                                                                    <  2:971426‑M1/58‑1 (MQ=255)
                                                          ggtggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat                                                                                   >  1:227427‑M2/1‑92 (MQ=255)
                                                          gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGcc                                                                                   <  2:51449‑M1/59‑1 (MQ=255)
                                                            gggacagcggatagaaacagaagccacgggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCt                                                                                 >  2:639238‑M1/83‑143 (MQ=255)
                                                                tggtgggggtaataatAGGGTCTTAAGTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                             >  2:703957‑M2/8‑86 (MQ=255)
                                                                  gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTtaa                                                                           <  1:193368‑M1/67‑2 (MQ=255)
                                                                        agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCCCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACACGGCATATACCCATATTTACACCgat                                                                     <  2:65184‑M1/73‑1 (MQ=255)
                                                                            acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAtt                                                                 <  1:623102‑M1/77‑1 (MQ=255)
                                                                            acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAtt                                                                 >  1:640127‑M1/67‑143 (MQ=255)
                                                                             aataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCGGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgtagcgca                                                                <  2:334435‑M2/143‑71 (MQ=255)
                                                                              ataGAGCCCTAAATTCAGTTGTGCAATCGCCAGGACTGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcca                                                               >  2:697043‑M2/1‑72 (MQ=255)
                                                                               taGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGtgtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                              >  2:858156‑M2/1‑71 (MQ=255)
                                                                               gaagccactggagcagctcaaaaacaccatcgtacgctaaatcgggaagttggcagcatcaccTTGTGCGGCCAATAAATATCTTTTCATAAAAGTGGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCg                                                              >  2:4429‑M1/64‑143 (MQ=255)
                                                                                agagCCTTAAATTCAGTTGTGCAATAGCCAGGACTGTAAGGCATTCCATATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgctagtgtcgtatggtcagataatgcccgatgactttgtcatgcagctccaac                                                             <  2:713512‑M2/143‑74 (MQ=255)
                                                                                  gccactggagcacctcaaaaacaccatcatacactaaagcggtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgcag                                                           >  1:333064‑M1/61‑143 (MQ=255)
                                                                                  agCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAGGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactgtgacatgcagcgccaccga                                                           <  2:58860‑M2/143‑76 (MQ=255)
                                                                                   gCCTTAACTTTAGTTGTGCAATCGCCAGGAATGTAAGGAATTCAAAGTTGTTCTTTATTTTGTGCCGggtaatgactccgactgattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgat                                                          >  2:641104‑M2/1‑67 (MQ=255)
                                                                                   gCCTTAAATTCAGTTGTGCTATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgat                                                          >  2:242882‑M2/1‑67 (MQ=255)
                                                                                   gCCTTAAATTCAGTTGTGCAAGAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgat                                                          >  2:212384‑M2/1‑67 (MQ=255)
                                                                                      ttAAATTCAGTTGTGCCATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                       >  2:812216‑M2/1‑64 (MQ=255)
                                                                                      ttAAATTCAGTTGTGCAATAGCCAGGAATGTCAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtcctgactccaacttattgatagaattatatgttcagataatgcccgatgactttgtcatgcagctccaccgctttt                                                       <  1:162907‑M2/143‑80 (MQ=255)
                                                                                       tAAATTCAGTTGTGCAATAGTCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                      >  2:961461‑M2/1‑63 (MQ=255)
                                                                                       tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                      >  2:625491‑M2/1‑63 (MQ=255)
                                                                                         gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAACTACCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                    >  1:686350‑M1/54‑143 (MQ=255)
                                                                                         aaTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgag                                                    >  1:240777‑M2/1‑61 (MQ=255)
                                                                                           gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAgg                                                  >  2:206745‑M1/52‑143 (MQ=255)
                                                                                           gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAgg                                                  <  2:941547‑M1/92‑1 (MQ=255)
                                                                                               ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCCGCACGTGAGGTTaa                                              <  2:906123‑M1/96‑1 (MQ=255)
                                                                                                tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                         >  2:37812‑M1/47‑115 (MQ=255)
                                                                                                tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaa                                             <  1:104153‑M1/97‑1 (MQ=255)
                                                                                                       aTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt                                      <  1:747678‑M2/143‑97 (MQ=255)
                                                                                                        tAGTCATGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGTCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttc                                     >  1:878442‑M2/1‑46 (MQ=255)
                                                                                                            cAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtc                                 >  1:2865‑M2/1‑42 (MQ=255)
                                                                                                             catacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCa                                <  1:933240‑M1/110‑1 (MQ=255)
                                                                                                             aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgctgactttatcatgccgctccccccattttcagcacgacagcaacttccgtcg                                <  2:504139‑M2/143‑103 (MQ=255)
                                                                                                                acactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt                             <  1:101750‑M1/113‑1 (MQ=255)
                                                                                                                 aTGGAAGGAATTCAAAATTGTTCTATATGTTGGGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc                            >  1:529210‑M2/1‑37 (MQ=255)
                                                                                                                  tGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc                           <  1:492489‑M2/143‑108 (MQ=255)
                                                                                                                  actaaatcagtaagttggcagcatcaccTTGTgccgcc                                                                                                                                    <  1:78163‑M1/10‑1 (MQ=255)
                                                                                                                  actaaatcagtaagttggcagcatcaccTTGTgccgcc                                                                                                                                    >  2:78163‑M1/29‑38 (MQ=255)
                                                                                                                     aaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAt                        <  1:1016268‑M1/118‑1 (MQ=255)
                                                                                                                     aaGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtg                        <  2:179253‑M2/143‑111 (MQ=255)
                                                                                                                     aaGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtttcatgttcagataatgcccgatgacttcgtcattcagctccaccgattttgagaacgacagcgacatcggacccagccgtg                        <  1:911118‑M2/143‑111 (MQ=255)
                                                                                                                      aGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccgacttatcgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgc                       >  1:202988‑M2/1‑32 (MQ=255)
                                                                                                                      aGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgc                       >  2:708131‑M2/1‑32 (MQ=255)
                                                                                                                          aTTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagg                   >  1:139147‑M2/1‑28 (MQ=255)
                                                                                                                            taagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATgg                 >  1:941547‑M1/19‑143 (MQ=255)
                                                                                                                            taaaaatgATTATTTATTTTGTGCCGggtaatgacgccaactgattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg                 >  1:10575‑M2/3‑26 (MQ=255)
                                                                                                                             cAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactgattgatagtgttttatgttcagataatgcccgatgactttgtgatgcagctccaccgagtttgagaacgacagcgacttccggcccagccgtgccaggtgc                <  1:843109‑M2/143‑119 (MQ=255)
                                                                                                                             aagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCTTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATggg                >  2:139963‑M1/18‑143 (MQ=255)
                                                                                                                              agttggcagcgctaccTTGGGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATgggg               >  2:534971‑M1/17‑143 (MQ=255)
                                                                                                                              aaaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct               <  1:533235‑M2/143‑120 (MQ=255)
                                                                                                                              aaaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacgttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct               <  1:277233‑M2/143‑120 (MQ=255)
                                                                                                                                aaTTGTTCTTTATTTGGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgc             >  1:917505‑M2/1‑22 (MQ=255)
                                                                                                                                         tcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGACAAGACGCGGCATATAGCCGTATTTACACCGTTGATTTCGCAGCACGTGAGGTTAAACCTTCCTGATTCATGTCACATTTTATGGGGAGCTTATCGTa    <  1:356649‑M1/138‑1 (MQ=255)
                                                                                                                                          tgtttcgtGTCGggtaatgagtccaacttattgatagtgtgttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattca   >  2:900961‑M2/3‑12 (MQ=255)
                                                                                                                                           cttttgTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag  >  2:1014681‑M2/2‑11 (MQ=255)
                                                                                                                                              |                                                                                                                                           
GATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGG  >  NC_000913/1292890‑1293171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.