Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)99 (1.650) 65/282 0.0 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)95 (1.580) 52/282 0.1 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 187 total aligned reads displayed.

AAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATT  >  NC_000913/1979347‑1979631
                                                                                                                                              |                                                                                                                                              
agataacgccttaaatggcgaagaaacggtctaaataggctgagtcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                >  2:304625‑M1/140‑143 (MQ=255)
aaaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTaa                                                                                                                                                >  1:537360/1‑143 (MQ=255)
 aaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAg                                                                                                                                               >  2:8346‑M1/1‑142 (MQ=255)
  ataccgccttaaatggcgaagaaacggtctaaataggctgcttcaaggcctttacgggagaaaccatcgcctcacacatgaagaaatgaaatgactgcgtaagccgttaacaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                              >  2:1012659‑M1/138‑143 (MQ=255)
  ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                              >  2:57228‑M1/138‑143 (MQ=255)
    aacgccttaaatggcgaacaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaa                                                                                                                                            >  1:47826‑M1/136‑143 (MQ=255)
        aCAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATCAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtg                                                                                                                                        >  1:1035925‑M1/1‑135 (MQ=255)
           taaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaa                                                                                                                                     >  1:909145‑M1/129‑143 (MQ=255)
             aatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCCAATTAAATacaaaaa                                                                                                                                   <  2:528006‑M1/17‑3 (MQ=255)
               aggcgaacaaccggtctaaataggctgattcaaggcatttacaggagaaaaaatcggctcaaacatgaagaaatcaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaa                                                                                                                                 >  2:689408‑M1/125‑143 (MQ=255)
                ggcgaagaaacggtctacataggctgattcaaggcatttacgagagaaaaaatcggctcaaacacgaagaaatgaaaggactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaag                                                                                                                                >  1:339739‑M1/124‑143 (MQ=255)
                ggcgaagaaacggtctaaataggccgattcaaggcattcacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaag                                                                                                                                >  1:994188‑M1/124‑143 (MQ=255)
                  tCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAGTAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgcacaagtc                                                                                                                              >  1:890474‑M1/1‑125 (MQ=255)
                  cgaagaaacggacgaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGc                                                                                                                              >  1:948524‑M1/122‑143 (MQ=255)
                   gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgccccttccCTAATTAAATACAAAGAAAGGca                                                                                                                             <  1:72166‑M1/23‑1 (MQ=255)
                   gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGca                                                                                                                             <  1:829069‑M1/23‑1 (MQ=255)
                   cGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTTAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcc                                                                                                                             <  1:471535‑M1/143‑20 (MQ=255)
                        tGGGATGTTTCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTACggaaggtgcgaacaagtccctgat                                                                                                                        <  2:780053‑M1/143‑25 (MQ=255)
                        tGGGATGGTGCGCACAGTCAAAACAACTAAGCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgat                                                                                                                        <  1:738549‑M1/143‑25 (MQ=255)
                              ctacatacgcggattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcgtattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACtt                                                                                                                  >  2:968143‑M1/110‑143 (MQ=255)
                              ctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACtt                                                                                                                  >  1:645950‑M1/110‑143 (MQ=255)
                              ctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACtt                                                                                                                  <  1:477664‑M1/34‑1 (MQ=255)
                                tGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATTCAATACCAGATAAGCTATTTTTAAACAGACACTTACTCTGCAACAAACTAAggaaggtgcgaacaagtcccttatatgagatc                                                                                                                <  2:890527‑M1/143‑33 (MQ=255)
                                tGCGCACAGTCAAAATAACTCACCGTAAATAATCAGCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACGTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatc                                                                                                                <  2:470525‑M1/143‑33 (MQ=255)
                                      caGTCAAAATAACTCGCCGTAAATAATCATCTGCTATAAATAATCACTGTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                          <  2:733427‑M1/143‑39 (MQ=255)
                                      caGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                          <  1:63283‑M1/143‑39 (MQ=255)
                                      caGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                          <  1:345251‑M1/143‑39 (MQ=255)
                                        tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttctCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaatg                                                                                                        <  1:1091472‑M1/44‑1 (MQ=255)
                                        tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACACTCACCttaatgttaatg                                                                                                        <  1:415135‑M1/44‑1 (MQ=255)
                                           cccaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaaa                                                                                                     >  1:92347‑M1/97‑143 (MQ=255)
                                            tcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATAAAAt                                                                                                    <  2:591747‑M1/48‑1 (MQ=255)
                                             aaTAGCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct                                                                                                   <  1:686057‑M1/143‑46 (MQ=255)
                                                ggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGttt                                                                                                >  1:490525‑M1/92‑143 (MQ=255)
                                                 gcaattacgagagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtttt                                                                                               >  2:132094‑M1/91‑143 (MQ=255)
                                                   tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc                                                                                             >  1:172379‑M1/1‑92 (MQ=255)
                                                   tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc                                                                                             >  1:226444‑M1/1‑92 (MQ=255)
                                                     ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcgCTAATTAAATACAAAGAAAGGCAACAATCAACATAATATTAATGAAAAGTTTTACat                                                                                           <  2:392583‑M1/57‑1 (MQ=255)
                                                      ccGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                          <  1:524628‑M1/143‑55 (MQ=255)
                                                       cGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag                                                                                         <  1:392119‑M1/143‑56 (MQ=255)
                                                         tAAATAATCTTCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTGTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaa                                                                                       <  2:552540‑M1/143‑58 (MQ=255)
                                                         gggagcaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTACTGTTAATGAAATGTTTTACctatat                                                                                       <  2:444918‑M1/61‑1 (MQ=255)
                                                         gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTCAATACAAAGAAAGGCAACAATCCACTTAATGTTAATGACATGTTTTACatatat                                                                                       <  1:803933‑M1/61‑1 (MQ=255)
                                                          aaaTAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac                                                                                      >  2:817101‑M1/1‑85 (MQ=255)
                                                           gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTa                                                                                     <  1:374119‑M1/63‑1 (MQ=255)
                                                           gagaaaaaagcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttgcccgcttattcgcaccttccCTAATTAAAGACAAAGAAAGGCAACCATCAACGTAATGTTAATGAAATGTTTTACATATATTa                                                                                     >  2:536869‑M1/81‑143 (MQ=255)
                                                            ataatCACCTGCTATAAATAATCACTTCCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgacatgagatcatgtttgtcatctggagccatagaacag                                                                                    <  1:704363‑M1/143‑61 (MQ=255)
                                                             gagaggatcgggtgaaacatgaagggatgaaatgactgagtcagccgggaagaatttgcccgcttattcgcaccttccCTAATTAATTACATAGATAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                                   >  2:434347‑M1/79‑143 (MQ=255)
                                                                tcatgTGCTATTAATAATCACTTTCATGCAAGACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt                                                                                <  2:709442‑M1/143‑65 (MQ=255)
                                                                  atcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca                                                                              >  1:643157‑M1/1‑77 (MQ=255)
                                                                       gctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTa                                                                         >  2:901446‑M1/69‑143 (MQ=255)
                                                                        tctaaataatcACTTTTATGAAATACCAGATAAGCTATTATTAAACAGACACTTACCGCACAATAAACTAAggaaggtgcgaacaagtccctgatctgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                        <  2:990966‑M1/141‑73 (MQ=255)
                                                                        tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                        <  2:766594‑M1/143‑73 (MQ=255)
                                                                           aaataaTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc                                                                     >  2:403686‑M1/1‑68 (MQ=255)
                                                                           aaataaTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgacatgatgtttgtcaactggagccatacaacaggcttcatcatgcgtc                                                                     >  2:403680‑M1/1‑68 (MQ=255)
                                                                             acatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCgg                                                                   >  1:774439‑M1/63‑143 (MQ=255)
                                                                                ggacgaactcaaatgactgcgtcatccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGgaga                                                                >  2:946361‑M1/60‑143 (MQ=255)
                                                                                 gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGaa                                                               <  1:355147‑M1/85‑1 (MQ=255)
                                                                                  gagaaatgaaatgacttagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACACTCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAAt                                                              >  2:638026‑M1/58‑143 (MQ=255)
                                                                                  cACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatcgaacagggttcatcatgagtcatccact                                                              >  2:248995‑M1/1‑61 (MQ=255)
                                                                                  aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAAt                                                              >  2:669396‑M1/58‑143 (MQ=255)
                                                                                   aCTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatagcaaatcatgtttatcatcagaagccatggaacagggttcatcataagacatcaactt                                                             >  2:20011‑M1/1‑60 (MQ=255)
                                                                                    gaaacgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCa                                                            <  1:802971‑M1/88‑1 (MQ=255)
                                                                                     aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCCACTTAATGTTAATGAAAAGGTTTACATATATTAACCACTTGTTTAATGAGGAGAATCAg                                                           <  2:1048909‑M1/89‑1 (MQ=255)
                                                                                     aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAg                                                           >  1:563380‑M1/55‑143 (MQ=255)
                                                                                       ctgaaaggacgcagtcaaccgagaagaattaccccgcttattcgcaccttcaCTAATTAAAGAGAAAGAAAGGAAACAATGAACTTAATTTTAATGAAAGGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTa                                                         >  2:176860‑M1/53‑143 (MQ=255)
                                                                                       acgaaatgactgagtcagccgagacgaaattccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTACCCACTTGTTTAATGCGGAGAATCAGTa                                                         >  1:844878‑M1/53‑143 (MQ=255)
                                                                                          aaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACATGTTTAATGCGGAGAATCAGTacac                                                      <  1:68959‑M1/94‑1 (MQ=255)
                                                                                                    gATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcctccacttaccttcgccgaaagtga                                            >  2:1064995‑M1/1‑43 (MQ=255)
                                                                                                     aTAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa                                           <  1:416911‑M1/143‑102 (MQ=255)
                                                                                                      tAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcctgtttgtcatctggagccatagaatagggttcatcatgagtcatcagcataccttcgcaggcattgaat                                          >  2:876680‑M1/1‑41 (MQ=255)
                                                                                                       agccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATaa                                         <  1:616232‑M1/107‑1 (MQ=255)
                                                                                                       agccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGATTTACATATATTAACAACTTGTTTATTGCGGAGAATCAGTACACTATTTTCTTATaa                                         <  2:359068‑M1/107‑1 (MQ=255)
                                                                                                            aTTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                    <  2:926881‑M1/143‑109 (MQ=255)
                                                                                                                   tctccgcgatcattagcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTCATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGaaa                             >  2:874376‑M1/25‑143 (MQ=255)
                                                                                                                    ttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACCTGTTTAATGCCGAGAATCAGTACACTCTTTTCTTATAATTACATCtgaact                            <  1:959150‑M1/120‑3 (MQ=255)
                                                                                                                      ccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATta                          <  1:577061‑M1/122‑1 (MQ=255)
                                                                                                                      aGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatcagattaagtttgtcatgtggcgccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgacg                          >  2:230620‑M1/1‑25 (MQ=255)
                                                                                                                       cccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAACACTTGTTTAATGCGGAGAATCAGTAAACTATATTCTTATAATTACATTTGAAATtat                         <  2:13518‑M1/123‑1 (MQ=255)
                                                                                                                        ccgattattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTTGTTTTAATGAAATGTTTTACATATATTATCCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATtata                        >  2:653513‑M1/20‑143 (MQ=255)
                                                                                                                           cTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga                     <  1:306399‑M1/143‑124 (MQ=255)
                                                                                                                            ttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGAt                    <  1:1071634‑M1/128‑1 (MQ=255)
                                                                                                                                 cgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGCTCACCg               <  1:779738‑M1/133‑1 (MQ=255)
                                                                                                                                  gcaccgtccCTAATTAAATGCAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTGACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCgg              >  2:499278‑M1/10‑143 (MQ=255)
                                                                                                                                  cacaACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaa              >  1:543774‑M1/1‑13 (MQ=255)
                                                                                                                                    accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGa            >  2:758848‑M1/8‑143 (MQ=255)
                                                                                                                                     aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagc           >  1:999865‑M1/1‑10 (MQ=255)
                                                                                                                                     aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga           >  1:428265‑M1/1‑10 (MQ=255)
                                                                                                                                        aaaCTAAcgaaggtgcgaacaagtccctgatatgagatcatgtttgtcacccggagccatggaacagggttcatcatgagtcatcaacttaccttcgccaacagtgaattcagcagtaagcgccgtcagaccagaaaagagat        <  1:20011‑M1/143‑137 (MQ=255)
                                                                                                                                           cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt     >  1:854661‑M1/1‑4 (MQ=255)
                                                                                                                                           cTAAggaaggtgcgaacaaggccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt     <  2:22171‑M1/143‑140 (MQ=255)
                                                                                                                                            tcaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    <  1:591236‑M1/141‑141 (MQ=255)
                                                                                                                                            tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttcccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    <  1:313104‑M1/143‑141 (MQ=255)
                                                                                                                                            tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    <  1:933081‑M1/143‑141 (MQ=255)
                                                                                                                                            tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    >  1:920152‑M1/1‑3 (MQ=255)
                                                                                                                                            tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    <  1:384177‑M1/143‑141 (MQ=255)
                                                                                                                                            tAAggaagggccggacaagtccctgacatgagatcatgtttgtcatgtgtagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    <  2:458598‑M1/143‑141 (MQ=255)
                                                                                                                                            tAAcgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    <  1:961123‑M1/143‑141 (MQ=255)
                                                                                                                                             aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttct   >  2:1091645‑M1/1‑2 (MQ=255)
                                                                                                                                             aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacaagataatgtttacggtgaattcagcagtaagcgccgtcagaccagaaaagagagtttct   >  1:247995‑M1/1‑2 (MQ=255)
                                                                                                                                              agggaggtgcgaacaagtcccggatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt  <  2:111953‑M1/143‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                              
AAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATT  >  NC_000913/1979347‑1979631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.