Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)117 (1.650) 69/282 0.0 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)75 (1.050) 56/282 0.2 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 180 total aligned reads displayed.

AAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGA  >  NC_000913/1979347‑1979629
                                                                                                                                              |                                                                                                                                             
ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                               <  1:639934‑M1/4‑1 (MQ=255)
 tctaaccccttaaagggcgaagaaacggtctaaacaggctgattcaaggcatttacgggagaaaaaatcggctccaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCtaag                                                                                                                                              >  1:283142‑M1/139‑142 (MQ=255)
 gataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                              <  2:1079809‑M1/5‑1 (MQ=255)
 gataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgaatgagtcacgctagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                              <  2:1254343‑M1/5‑1 (MQ=255)
 aaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAg                                                                                                                                              <  2:542954‑M1/143‑2 (MQ=255)
  ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcacataagccgagaaaaatctcctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccctaaga                                                                                                                                             >  1:293178‑M1/138‑141 (MQ=255)
      cgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAAt                                                                                                                                         >  2:1074764‑M1/134‑143 (MQ=255)
      cgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAAt                                                                                                                                         >  1:881836‑M1/134‑143 (MQ=255)
       gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctccaacatgaatagttgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATa                                                                                                                                        >  1:1158151‑M1/133‑143 (MQ=255)
       gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacaagaagaaatgaaatgactgagtcagccgagaagaatatccccgcttaaacgcacataccctaagagaatc                                                                                                                                        <  2:729704‑M1/11‑8 (MQ=255)
          aGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcg                                                                                                                                     <  1:846498‑M1/143‑11 (MQ=255)
           tagagggcgaagaaacgggcgaaacaggctgatccaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgtgtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATCCaaa                                                                                                                                    >  1:668954‑M1/129‑143 (MQ=255)
           taaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgccccttccCTAATTAAATAcaac                                                                                                                                    <  1:1050111‑M1/15‑2 (MQ=255)
               tggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaa                                                                                                                                >  2:769309‑M1/125‑143 (MQ=255)
                 gcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAgg                                                                                                                              >  1:957198‑M1/123‑143 (MQ=255)
                  tCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtc                                                                                                                             <  1:423194‑M1/143‑19 (MQ=255)
                   gaagaaccggtctaaataggctgattcaaggcattgactggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATAAAAAGAAAGGca                                                                                                                            <  2:277982‑M1/23‑1 (MQ=255)
                   cGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTCCCGCCCAACCGACTAAggaaggtgcgaacaagtcc                                                                                                                            >  1:603182‑M1/1‑124 (MQ=255)
                    gAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccc                                                                                                                           <  2:648101‑M1/143‑21 (MQ=255)
                       aTGGGATGTTGCGCACAGTCAAAATAACTTTCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctga                                                                                                                        <  2:689925‑M1/143‑24 (MQ=255)
                        aacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                       <  1:583807‑M1/28‑1 (MQ=255)
                         acggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaggaaatgaaatgacggagtcagccgagaagaatttccccgcttatacgcagcttcaCTAATTAAACACAAAGAACGGCAACCATc                                                                                                                      <  2:771759‑M1/29‑1 (MQ=255)
                          ggATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgattt                                                                                                                     >  1:390489‑M1/1‑117 (MQ=255)
                            gtctaaagaggctgattcaaggcatgtacgagagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAAc                                                                                                                   >  1:125455‑M1/112‑143 (MQ=255)
                                 aataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaat                                                                                                              >  1:439220‑M1/107‑143 (MQ=255)
                                   ttacagtCAAAATAACTTACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatg                                                                                                            <  1:951356‑M1/141‑36 (MQ=255)
                                    cacaGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgt                                                                                                           <  2:1125411‑M1/143‑37 (MQ=255)
                                      caGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACTACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                         <  1:1236528‑M1/143‑39 (MQ=255)
                                      caGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTAGTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                         <  2:749733‑M1/143‑39 (MQ=255)
                                       ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                        <  2:352486‑M1/43‑1 (MQ=255)
                                       ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccgtccCTAAATAAATACAAAGAAAGGCAACCATCAACttaatgttaat                                                                                                        <  1:637067‑M1/43‑1 (MQ=255)
                                         tCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtc                                                                                                      >  2:143823‑M1/1‑102 (MQ=255)
                                         tCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtc                                                                                                      >  1:1115629‑M1/1‑102 (MQ=255)
                                           ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaaa                                                                                                    <  2:596441‑M1/47‑1 (MQ=255)
                                            ataagccatttacgagagaaaacatcggctcagacatgaataaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGATAGGCAACAATCAACTTAATGTTAATGAAAt                                                                                                   >  2:115600‑M1/96‑143 (MQ=255)
                                            aaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatctgagaacatgtttgtcagc                                                                                                   >  2:390001‑M1/1‑99 (MQ=255)
                                            aaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc                                                                                                   <  2:1220503‑M1/143‑45 (MQ=255)
                                            aaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc                                                                                                   >  1:693716‑M1/1‑99 (MQ=255)
                                              aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgcgtcagccgagcagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCATCAATCAACTTAATGTTATTGAAgtgt                                                                                                 <  1:1061680‑M1/50‑1 (MQ=255)
                                              aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt                                                                                                 <  1:1046961‑M1/50‑1 (MQ=255)
                                              aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttacccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACCTAATGTTAATGAAATGt                                                                                                 <  2:344525‑M1/50‑1 (MQ=255)
                                                ggcacttacgggagaaaacagcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGttt                                                                                               >  1:453788‑M1/92‑143 (MQ=255)
                                                 gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtttt                                                                                              >  1:199741‑M1/91‑143 (MQ=255)
                                                   atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCCTATTATATACAAATAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc                                                                                            <  1:23962‑M1/55‑1 (MQ=255)
                                                      tacaggagaaaagatctgctcatatatgaagaaatgaaatgactgagtcagccgagaagagtttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACata                                                                                         >  1:1143535‑M1/86‑143 (MQ=255)
                                                      ccGTAAATAATCATCAGCTATAAATAATCACCTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                         <  1:720987‑M1/143‑55 (MQ=255)
                                                      ccGAAAAGAAGCACCTGCTATAAATAAACACTTTCATGCAATACCAGAGAAGGTATTTTTAAACAGACACTGACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                         <  2:952448‑M1/143‑55 (MQ=255)
                                                         tAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAAAGACTTACAGCACACCAAACTAAggaaggagcgaacaagtccctgatatgagatcatgttagtcatcaggcgacagagac                                                                                      >  2:869906‑M1/1‑86 (MQ=255)
                                                             taagCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtgcctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                                  <  2:457425‑M1/143‑62 (MQ=255)
                                                             gaaaaaatcggctcaaacatgaagaaatgacatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                                  >  1:848604‑M1/79‑143 (MQ=255)
                                                             gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                                  >  2:1170125‑M1/79‑143 (MQ=255)
                                                             gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                                  >  1:144199‑M1/79‑143 (MQ=255)
                                                             gaaaaaatcggcgcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                                  >  1:340426‑M1/79‑143 (MQ=255)
                                                             agagaattcggctcaaacagtgagagatgaaatgactgagtccgccgataagaattgcccagcttattcgcaccttccCTAATTAAATACAAATAAAGTCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                                  >  2:842530‑M1/79‑143 (MQ=255)
                                                                tcatcTGCTATAAATAATCTCTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgcagccatagaacagggtt                                                                               <  2:335900‑M1/143‑65 (MQ=255)
                                                                tcatcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt                                                                               >  1:1007370‑M1/1‑79 (MQ=255)
                                                                aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATATTTTACATATATTAACCAc                                                                               <  1:986562‑M1/68‑1 (MQ=255)
                                                                  aatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTCGTGTTAATGAAATGTTGTACATAACTTAACCCCtt                                                                             <  2:263291‑M1/70‑1 (MQ=255)
                                                                  aatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACtt                                                                             >  2:1135323‑M1/74‑143 (MQ=255)
                                                                    cTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagagcagggttcatc                                                                           >  1:177123‑M1/1‑75 (MQ=255)
                                                                     ggcTATAAATAATCACTTTCATGCAATACCATATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaatgtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatca                                                                          <  1:802867‑M1/142‑70 (MQ=255)
                                                                       gctcaaacatgaagaaatgcaatgactgggtcagccgagaagaatttccccgcttattcacaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTCGTGTTAATGAAATGCTTTACATATATTAGCCAATAGTTTa                                                                        <  2:879771‑M1/75‑1 (MQ=255)
                                                                       cTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg                                                                        <  2:715667‑M1/143‑72 (MQ=255)
                                                                        tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                       <  2:148967‑M1/143‑73 (MQ=255)
                                                                        tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggacggtgcgaacaagtccctgatatgagatcacgtttgtcagctcgagccacagacccgggtccatcacga                                                                       >  2:1275702‑M1/1‑71 (MQ=255)
                                                                        tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                       <  1:916162‑M1/143‑73 (MQ=255)
                                                                        ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTaa                                                                       <  2:486126‑M1/76‑1 (MQ=255)
                                                                         tcaagcatgaagaaatgaaatgactgcgtcagcccagaaaaaccattactttcagtcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAAt                                                                      >  2:1187829‑M1/67‑143 (MQ=255)
                                                                                     tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCCCACAACAAACTAGggaatgtgcgcccaacaccctgatatgagatcatgtttgtcatctggagccatcgcacagggttcatcatgattcatcctcttcc                                                          >  2:778048‑M1/1‑58 (MQ=255)
                                                                                         attcaatACCAGCTAAGCTATTTTCAAACAGACACTTACCTCACAACAACCTAAtgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc                                                      <  2:934877‑M1/140‑90 (MQ=255)
                                                                                           gCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc                                                    >  1:680426‑M1/1‑52 (MQ=255)
                                                                                           gCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggattcatcatgagtcatcaacttaacttcgc                                                    >  1:1184890‑M1/1‑52 (MQ=255)
                                                                                            atgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTACCCAATTGTTTATTGTGGTGCATcagtacgctt                                                   <  1:370039‑M1/96‑5 (MQ=255)
                                                                                                ctgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAAATTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTAtttt                                               >  2:817929‑M1/44‑143 (MQ=255)
                                                                                                 tgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTc                                              <  1:568165‑M1/101‑1 (MQ=255)
                                                                                                  cAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt                                             <  2:1007370‑M1/143‑99 (MQ=255)
                                                                                                       aaGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt                                        <  2:693716‑M1/143‑104 (MQ=255)
                                                                                                        gccgagaagaatttccccgcttattcgcaccttccCTAATTAGATTCGTGGGTGAGCAACAAGCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAAt                                      >  1:1282409‑M1/36‑143 (MQ=255)
                                                                                                        gccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAACGGCGACAATACACTTAATGTTAATGAAATGTTTTACATATATTAACCACTAGTTTAATGCGGAAGATCAGTACACGAttgtcttcaaat                                       <  2:241756‑M1/108‑6 (MQ=255)
                                                                                                        gccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGTGAAGAATCAGTACACTATTTTCTTATAAt                                      <  2:1142044‑M1/108‑1 (MQ=255)
                                                                                                           tATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc                                    >  1:283459‑M1/1‑36 (MQ=255)
                                                                                                            aTTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                   <  1:486624‑M1/143‑109 (MQ=255)
                                                                                                               tttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa                                <  1:208865‑M1/143‑112 (MQ=255)
                                                                                                                   tttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGaaa                           <  1:1086184‑M1/119‑1 (MQ=255)
                                                                                                                    ttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAt                          >  1:1259794‑M1/24‑143 (MQ=255)
                                                                                                                    ttccccgcttattcgaaccttccCTAATCAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAt                          >  1:306715‑M1/24‑143 (MQ=255)
                                                                                                                    aCAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgc                           >  1:704205‑M1/1‑27 (MQ=255)
                                                                                                                     cAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcc                          >  1:383830‑M1/1‑26 (MQ=255)
                                                                                                                      aGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccg                         >  2:1181549‑M1/1‑25 (MQ=255)
                                                                                                                       gACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                        <  1:193805‑M1/143‑120 (MQ=255)
                                                                                                                        ccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATCATTACATTTGAAATtata                      <  1:60747‑M1/124‑1 (MQ=255)
                                                                                                                                  gcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACGTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCgg            >  2:1050111‑M1/10‑143 (MQ=255)
                                                                                                                                    accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGa          <  1:67643‑M1/136‑1 (MQ=255)
                                                                                                                                      cttccCTAATTAAATACAAAGAAGGTCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGGAATTATATGATCACCGGGAGt        <  2:160246‑M1/138‑1 (MQ=255)
                                                                                                                                      acaaACTAAggaaggtgcgaacaagtccctgatatgagataatgactggcctcggtatccatagaacagggttcatcatgagtcatcaccttaccttcgccgacagtgaatccggcagtaagcgccgtcagccccgagaagag         >  2:1263364‑M1/1‑9 (MQ=255)
                                                                                                                                        tccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTAACATCTTTGTTATTAATTACATTTGAAATTATATGATACCCGGCAGTGa      <  2:565309‑M1/140‑1 (MQ=255)
                                                                                                                                         ccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGAt     <  2:311217‑M1/141‑1 (MQ=255)
                                                                                                                                          cCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATaa                                       <  2:896564‑M1/107‑1 (MQ=255)
                                                                                                                                          cCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATaa                                       >  1:896564‑M1/2‑108 (MQ=255)
                                                                                                                                            tAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgattga  <  1:1270454/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                             
AAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGA  >  NC_000913/1979347‑1979629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.