Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 65 [0] [0] 65 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)62 (1.030) 53/264 0.1 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815717‑3816000
                                                                                                                                              |                                                                                                                                              
acccctgtTTGCTAAGCGCAAATGCAATAACCTGGCGCTGATATGGTTTCATGCTTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCCGCGCCGCCTTCTGCc                                                                                                                                               <  2:580937‑M1/140‑2 (MQ=255)
acacCTGCTTGCTAAGCGCAAATTCAATAACCTGGCGGTGATATGGTTTCAGGCGTTCGCTCCTCATCTTACGTTTCCACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTGGCCAGCGCCGCCTTCTGCc                                                                                                                                               <  1:394799‑M1/143‑2 (MQ=255)
  acCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTCTACAGACAAAAAGAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc                                                                                                                                            >  1:982873‑M1/1‑139 (MQ=255)
   ccTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc                                                                                                                                            <  1:574065‑M1/143‑5 (MQ=255)
    cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAACAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCCTCTGCcgtcc                                                                                                                                           >  2:430223‑M1/1‑138 (MQ=255)
     tgctcgccAAGCGCAAATTCAATAACCTGGCGCTGATATGGTATCGCGCCTTCGCCCCTCACCTTACTTTCCGACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCCGCcgtccc                                                                                                                                          <  1:320901‑M1/143‑7 (MQ=255)
      gcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTCAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccc                                                                                                                                         >  1:367847‑M1/1‑136 (MQ=255)
               gcgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGACGACTCATCAGTCGCCTTAAAAACCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttca                                                                                                                                >  2:948711‑M1/1‑127 (MQ=255)
                 gcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAACGCCGCCTTCTGCcgtccacagcacttcaat                                                                                                                              >  2:198710‑M1/1‑125 (MQ=255)
                   aaaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatga                                                                                                                            >  1:54587‑M1/1‑123 (MQ=255)
                    aactcaaTAACCCGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                           <  1:157046‑M1/140‑22 (MQ=255)
                    aaTTCAATAAACGGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTATCAGAACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                           <  1:1169484‑M1/143‑22 (MQ=255)
                       tCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcg                                                                                                                        <  1:193516‑M1/143‑25 (MQ=255)
                        cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc                                                                                                                       <  2:54587‑M1/143‑26 (MQ=255)
                               cTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACCAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGTCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctt                                                                                                                <  1:278497‑M1/143‑33 (MQ=255)
                                 ggCGCTGACATGGTTTCACGCCTTCGCGCCTCATCTTACTTCTCGACAGACAAAAAAAAGGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCCGCcgtccgctgcacttcaatgatgcgcccgtcttcg                                                                                                              <  2:301216‑M1/143‑35 (MQ=255)
                                    gcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtc                                                                                                           <  1:633351‑M1/143‑38 (MQ=255)
                                     cTGATATGGTTTCATGCCTTCGCACCTCGTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtca                                                                                                          <  1:160312‑M1/143‑39 (MQ=255)
                                         tctggTCTCATGCCTGCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGACTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCagtcccctgcacttcaatgatgcgcccgtcttcggtcatcac                                                                                                      <  2:199302‑M1/141‑43 (MQ=255)
                                          atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcact                                                                                                     >  2:256102‑M1/1‑100 (MQ=255)
                                              tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgt                                                                                                 >  1:421968‑M1/1‑96 (MQ=255)
                                              tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgggcatcactacgt                                                                                                 >  1:562163‑M1/1‑96 (MQ=255)
                                                tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                               >  1:385557‑M1/1‑94 (MQ=255)
                                                tCATGCCTTCGCTCCTCATCTTACTCCACCCCTAACAGAATAAATGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                               <  1:796617‑M1/143‑50 (MQ=255)
                                                  aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGTCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtgatcactacgttcat                                                                                             >  1:148138‑M1/1‑92 (MQ=255)
                                                  aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcat                                                                                             >  2:148481‑M1/1‑92 (MQ=255)
                                                    gCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgt                                                                                           <  1:1073225‑M1/143‑54 (MQ=255)
                                                      cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcg                                                                                         >  1:1085449‑M1/1‑88 (MQ=255)
                                                        tCGCTCCTGATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggt                                                                                       <  2:1106800‑M1/143‑58 (MQ=255)
                                                            tcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctct                                                                                   >  1:1093090‑M1/1‑82 (MQ=255)
                                                            tcctcACCTTACTTTCCTTCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacatcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctct                                                                                   <  1:1062350‑M1/143‑62 (MQ=255)
                                                            ccctcacctcacTTTGCTACAGACAAAAAAACGGCGACTCACCAGCCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacatcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctct                                                                                   <  1:1062675‑M1/142‑62 (MQ=255)
                                                              ctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatttcggtctctgc                                                                                 >  2:838569‑M1/1‑80 (MQ=255)
                                                                cATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgg                                                                               <  1:873016‑M1/143‑66 (MQ=255)
                                                                  tCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggca                                                                             >  1:148341‑M1/1‑76 (MQ=255)
                                                                  tCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcatgtcggtctctgcggca                                                                             >  1:212274‑M1/1‑76 (MQ=255)
                                                                  tCTTACTTTTCTACAGACAAAAAAAAGGCGACGCATCAGTCGCCTTAAAAAGCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatatcgatctctgcaaca                                                                             >  2:615851‑M1/1‑76 (MQ=255)
                                                                        ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtct                                                                       >  2:595076‑M1/1‑70 (MQ=255)
                                                                            cTACAGCCAAAACAACGGCGACGCATCAGTCGCCTTAAAACTCCGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacattcatgtcggtctctgcggcagagtcttcaa                                                                   <  2:865952‑M1/143‑78 (MQ=255)
                                                                                   aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatt                                                             <  2:787808‑M1/143‑84 (MQ=255)
                                                                                     aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtaatcactacgttcatgtcggtctctgcggcggtgtcttcaacgtattcc                                                           >  1:905159‑M1/1‑58 (MQ=255)
                                                                                       aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccag                                                         >  1:832282‑M1/1‑56 (MQ=255)
                                                                                       aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCAGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgggctctgcggcagagtcttcaacgtattccag                                                         >  1:311953‑M1/1‑56 (MQ=255)
                                                                                        aaaaaGGCGACTCATCTGTCGCCGTAAAACTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaga                                                        <  1:135116‑M1/143‑89 (MQ=255)
                                                                                             ggCGACTCATCAGTCGCCTTAAAAGTCAGTTTGCCAGCGCCGCCTTCTGCcgtctcctgcttttcaatgtttcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgca                                                   <  2:705645‑M1/143‑94 (MQ=255)
                                                                                               cgtcgcatccgtcccCGTAACAACCAGTTCGCGTGCGCCGCCTTCTGCcgctccctgcacttcaattatgcgtccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaa                                                 <  2:1124395‑M1/138‑96 (MQ=255)
                                                                                                     atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatacgcccgtcttcggccatcactacgttcacaacagtctattttgcagagacttcaccgtattcccgatcgcaaaccgctc                                           >  2:517994‑M1/1‑42 (MQ=255)
                                                                                                      tcaCTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtccatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttc                                          <  1:838569‑M1/143‑103 (MQ=255)
                                                                                                        agacgccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgc                                        <  1:123939‑M1/140‑105 (MQ=255)
                                                                                                        aGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgttttccagatcgcaaaccgcttcgc                                        >  1:950121‑M1/1‑39 (MQ=255)
                                                                                                         gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgcc                                       <  1:284392‑M1/143‑106 (MQ=255)
                                                                                                              cTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcacccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttca                                  <  1:736623‑M1/143‑111 (MQ=255)
                                                                                                               ttcaaactcaGGTTGCCAGCTCCGCCTCCTCCcgtcccctgcacttcataactacgcccgtcttcggtcatcactacgttcatgtcggtcgctgccgcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcac                                 <  2:191708‑M1/140‑112 (MQ=255)
                                                                                                               ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtccctccggcagagtcttcaacgtatcccagatcgcaacccgctcccccgctcac                                 >  1:810031‑M1/1‑32 (MQ=255)
                                                                                                                    aaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagaggcttcaacggattccagatcgcaaaccgcttcgccgttcacaattc                            >  2:948689‑M1/1‑27 (MQ=255)
                                                                                                                       cAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgctcttcaatgatgcgcccgtcttcggtcatcactactttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga                         <  2:90266‑M1/143‑120 (MQ=255)
                                                                                                                       cAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga                         <  1:256102‑M1/143‑120 (MQ=255)
                                                                                                                         gTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgctgcgccgagcacactcccgacc                       >  2:805587‑M1/1‑22 (MQ=255)
                                                                                                                             gCCAGCGCCGCCTTCTGCcgtccccttcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctccgccagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcccacttccgaccgccc                   >  1:398386‑M1/1‑18 (MQ=255)
                                                                                                                               cAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctgcaacgtagtccacatcgcaaaccccctcgccgcccccacttccgacacaaacc                 >  2:1036360‑M1/1‑16 (MQ=255)
                                                                                                                                aGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactg                <  2:148341‑M1/143‑129 (MQ=255)
                                                                                                                                  cgccgcCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagctcgcaaaccgcttcgccgttcacaattccgacagaagctgcg              >  1:1016728‑M1/1‑13 (MQ=255)
                                                                                                                                      gccTTCTGCcgtcccctgcacttccatgatgcgcccgtcttcggtcatcacgacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggcta          <  1:1005839‑M1/143‑135 (MQ=255)
                                                                                                                                       ccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcaccattccgacagaaactgcggctac         >  1:207481‑M1/1‑8 (MQ=255)
                                                                                                                                              ccgtcccctgcccttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct  <  2:922226‑M1/143‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                              
ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815717‑3816000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: