Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979269 1979278 10–776 49 [0] [1] 49 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)47 (1.240) 37/268 0.1 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

TGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTA  >  NC_000913/1978360‑1978638
                                                                                                                                              |                                                                                                                                        
tGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGGCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATAACACAACACACTCAATTACTTAACATAAATG                                                                                                                                          >  2:544004‑M1/1‑143 (MQ=255)
    tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtata                                                                                                                                      >  1:512764‑M1/1‑139 (MQ=255)
      tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATGACACAAAACACACAATTACTTAACATAAATGtataag                                                                                                                                    >  2:372590‑M1/1‑137 (MQ=255)
        tatacttaTCCAAGAGTTTTCCTAAACCTACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGTGGCTTCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtagaagtc                                                                                                                                  <  2:208407‑M1/140‑9 (MQ=255)
                  tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                        >  2:4873‑M1/1‑125 (MQ=255)
                   gagttttttcctaAATCGACGCCATTGCTCGCGTAACTGCACGCGCATACAACCGAGGGTGGCTGCGCTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTATCATAAATGtataagtcatacttttgtt                                                                                                                       <  2:337177‑M1/139‑20 (MQ=255)
                   aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                       >  1:84632‑M1/1‑124 (MQ=255)
                               gaatCGATGCAACTGTACTCGTTACTACACGCACATACAGCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                           <  1:281118‑M1/142‑32 (MQ=255)
                                     aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACTCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattccaatct                                                                                                     <  2:485861‑M1/143‑38 (MQ=255)
                                             tttctcgTCACTACACGCACATGCAACGGAGGGGGTCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                             <  2:78828‑M1/140‑46 (MQ=255)
                                             gTACCCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactgttgttttgggtgtatttcaatctgttaaaaa                                                                                             <  2:311944‑M1/143‑46 (MQ=255)
                                                 tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACTCTCAACTACTTATCATATTTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                         <  1:28379‑M1/143‑50 (MQ=255)
                                                 tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttagtattgggtgtatttcaatctgttaaaaagttt                                                                                         >  1:686077‑M1/1‑94 (MQ=255)
                                                 tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATATTCAATAATGCGTGATGCAGAGCACACAGAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggggtatttgaatctggtgacaagtgt                                                                                         >  2:367372‑M1/1‑94 (MQ=255)
                                                  cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                        >  1:341625‑M1/1‑93 (MQ=255)
                                                   gcgactgCACGCACATACAACGGAGGGGTGCCGCCATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                       <  1:642262‑M1/140‑52 (MQ=255)
                                                   gTCCCTACACGCACATCCCACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                       <  1:49902‑M1/143‑52 (MQ=255)
                                                   gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattttaatctgttaaaaagttttt                                                                                       >  1:408635‑M1/1‑92 (MQ=255)
                                                       cTACACGCACAGTCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGAGCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct                                                                                   <  1:388162‑M1/143‑56 (MQ=255)
                                                        tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta                                                                                  >  2:402260‑M1/1‑87 (MQ=255)
                                                             gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                             >  1:523351‑M1/1‑82 (MQ=255)
                                                                  tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaattttttcgctacgctagcaag                                                                        >  2:361959‑M1/1‑77 (MQ=255)
                                                                  tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactcttgttctagctgtattatacgtttgaaaaaagtttttcgctacgctagcaag                                                                        >  2:7042‑M1/1‑77 (MQ=255)
                                                                     aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                                                                     >  1:279366‑M1/1‑74 (MQ=255)
                                                                              gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                                                            >  2:158646‑M1/1‑65 (MQ=255)
                                                                              gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttagctacgctagcaagcaaaaatgaaac                                                            >  1:369823‑M1/1‑65 (MQ=255)
                                                                                  tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggc                                                        >  1:716567‑M1/1‑61 (MQ=255)
                                                                                    cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctatcaagcaaacatgaaaaggccac                                                      >  2:622694‑M1/1‑59 (MQ=255)
                                                                                    cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaat                                                      >  1:575835‑M1/1‑59 (MQ=255)
                                                                                          tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcga                                                <  1:222289‑M1/143‑91 (MQ=255)
                                                                                            aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttctaaagtttttcgctacgctagcaagcaaaaatgaagcaggtataatcgaga                                              >  1:256216‑M1/1‑51 (MQ=255)
                                                                                            aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggactaatcgaaa                                              >  2:180584‑M1/1‑51 (MQ=255)
                                                                                                  gCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttataaagtttttcgctacgctagcaagcaaaaatgaaacaggattaatcgaactgggct                                        >  2:42148‑M1/1‑45 (MQ=255)
                                                                                                  gCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat                                        <  1:39488‑M1/143‑99 (MQ=255)
                                                                                                         gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgc                                 >  1:34124‑M1/1‑38 (MQ=255)
                                                                                                            gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtaatacattctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgcgatgttgcgcaca                              >  2:672958‑M1/1‑35 (MQ=255)
                                                                                                               cacacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtc                           <  2:84632‑M1/143‑112 (MQ=255)
                                                                                                                  acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggctgttgcgcacagtcaaa                        >  1:677052‑M1/1‑29 (MQ=255)
                                                                                                                  acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgatttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacaatcaaa                        >  1:709467‑M1/1‑29 (MQ=255)
                                                                                                                      aaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaatca                    >  1:646818‑M1/1‑25 (MQ=255)
                                                                                                                           tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac               >  2:397215‑M1/1‑20 (MQ=255)
                                                                                                                           tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac               >  1:558955‑M1/1‑20 (MQ=255)
                                                                                                                            cgattACTTAACGTAAATGtataagtcctacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacc              <  1:4873‑M1/141‑125 (MQ=255)
                                                                                                                            cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggcatgttgcgcacagtcaaaataactcacc              <  2:91071‑M1/143‑125 (MQ=255)
                                                                                                                             aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactaacag             >  2:654478‑M1/1‑18 (MQ=255)
                                                                                                                                tACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaatacctcacggtaa          >  2:146337‑M1/1‑15 (MQ=255)
                                                                                                                                   ttAACATAAATGtataagtcatacttttgttttgtgtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata       >  2:441149‑M1/1‑12 (MQ=255)
                                                                                                                                      aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc    <  2:82166‑M1/143‑135 (MQ=255)
                                                                                                                                        aTAAATGtatatgtcatacttttgttttgcgtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat  <  2:336741‑M1/143‑137 (MQ=255)
                                                                                                                                              |                                                                                                                                        
TGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTA  >  NC_000913/1978360‑1978638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.