Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)48 (1.200) 33/284 0.2 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)57 (1.420) 35/284 0.2 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATT  >  NC_000913/1979344‑1979627
                                                                                                                                              |                                                                                                                                             
tggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                               <  1:221528‑M1/1‑1 (MQ=255)
tggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttaagggagaaaaaaacggcgcaaacaggaagaaatgaaatgactgagtccgccgcaaagaatgtcccctctacatcggaccttccc                                                                                                                                               <  2:62979‑M1/1‑1 (MQ=255)
  gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaacaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcccca                                                                                                                                             <  2:40024‑M1/3‑3 (MQ=255)
  gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                             <  1:244949‑M1/3‑1 (MQ=255)
  gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                             <  1:241184‑M1/3‑1 (MQ=255)
   ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagcaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatctccccgcttattcgcaccttccCTaa                                                                                                                                            <  2:386342‑M1/4‑1 (MQ=255)
   ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                            >  2:125209‑M1/140‑143 (MQ=255)
   aaaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTaa                                                                                                                                            <  1:441149/143‑1 (MQ=255)
    gataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagcaaaaattggctaaaacaagaagaaatgaactgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                           <  1:168124‑M1/5‑1 (MQ=255)
    aaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATCAGCTATTATTAAACAGACACTTACCGCACAACAAACTAAg                                                                                                                                           >  2:25894‑M1/1‑142 (MQ=255)
        tcgcgttaaatggcgaagaaacggtctacataggcggattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                       >  2:654041‑M1/135‑143 (MQ=255)
          gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATa                                                                                                                                     >  1:5340‑M1/133‑143 (MQ=255)
               gAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACAGCACAACAAACTAAggaaggtgcgaa                                                                                                                                >  2:550305‑M1/1‑131 (MQ=255)
                       gAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccc                                                                                                                        <  1:158646‑M1/143‑21 (MQ=255)
                       gAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccc                                                                                                                        >  2:156342‑M1/1‑123 (MQ=255)
                       aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattctcaccttccCTACTTAAATACAAAGAAAGGcaa                                                                                                                        >  2:378756‑M1/120‑143 (MQ=255)
                        aaaTGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccct                                                                                                                       >  1:112762‑M1/1‑122 (MQ=255)
                          aaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccgcgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaacaa                                                                                                                     <  1:486175‑M1/27‑1 (MQ=255)
                             ggATGTTGCGTACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCATATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatat                                                                                                                  <  2:723928‑M1/143‑27 (MQ=255)
                              ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACCATCaa                                                                                                                 <  1:439294‑M1/31‑1 (MQ=255)
                              gATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatg                                                                                                                 <  1:523096‑M1/143‑28 (MQ=255)
                                 gTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgaga                                                                                                              <  2:232005‑M1/143‑31 (MQ=255)
                                 gTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgaga                                                                                                              <  2:686077‑M1/143‑31 (MQ=255)
                                  taaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACtta                                                                                                             <  1:115460‑M1/35‑1 (MQ=255)
                                      taggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAGGGCAACAATCAACttaatgt                                                                                                         <  1:323360‑M1/39‑1 (MQ=255)
                                          aGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTGAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttg                                                                                                     <  1:42148‑M1/143‑40 (MQ=255)
                                            gattcaaggcatttacgggagaaaaaatcggctcaaacacgaagaaatgaaatgactgagtcagccgacaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGa                                                                                                   >  1:155699‑M1/99‑143 (MQ=255)
                                                 aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt                                                                                              <  2:449211‑M1/50‑1 (MQ=255)
                                                  aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGttaatgacctgcg                                                                                             <  1:560088‑M1/51‑7 (MQ=255)
                                                  aggcatgtacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtt                                                                                             >  1:697740‑M1/93‑143 (MQ=255)
                                                     gatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                          >  1:220079‑M1/90‑143 (MQ=255)
                                                      tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc                                                                                         >  1:399696‑M1/1‑92 (MQ=255)
                                                      tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGAACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgcagcc                                                                                         >  2:209704‑M1/1‑92 (MQ=255)
                                                        ttacgagagaaaaaatcggctcaaacatgaagaaattaaatgactgagtcagccgagaaaaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACat                                                                                       >  2:60045‑M1/87‑143 (MQ=255)
                                                          acgggagaaaagatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatat                                                                                     >  2:194722‑M1/85‑143 (MQ=255)
                                                           cgggagaaaaaatcggctcaaacatgaagaagtgaaatgactgagtcaggcgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatata                                                                                    >  1:729542‑M1/84‑143 (MQ=255)
                                                            gggagaaagagtcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatatat                                                                                   >  2:404856‑M1/83‑143 (MQ=255)
                                                            gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcggccgagaagaatttccccgcttattcgcaccttccCTAATTACATACAACGAAAGGCAACAATCAACTTAATGTTAATGAAATGTATTACatatat                                                                                   <  1:181908‑M1/61‑1 (MQ=255)
                                                                taatCATCTGCTATAAATAATCCCTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                               <  2:558955‑M1/143‑62 (MQ=255)
                                                                taatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTAGTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                               <  1:518709‑M1/143‑62 (MQ=255)
                                                                gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                               <  2:464479‑M1/65‑1 (MQ=255)
                                                                 aatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                              <  2:369823‑M1/143‑63 (MQ=255)
                                                                   tcatcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt                                                                            >  2:362170‑M1/1‑79 (MQ=255)
                                                                   aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTACTTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAAATATATtaactac                                                                            <  2:247740‑M1/68‑4 (MQ=255)
                                                                       tcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATCTATTAACCACTTGt                                                                        <  1:440046‑M1/72‑1 (MQ=255)
                                                                       tcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGt                                                                        <  1:14007‑M1/72‑1 (MQ=255)
                                                                       cTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaataagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                                                                        <  2:611637‑M1/143‑69 (MQ=255)
                                                                       cTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTAGTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                                                                        <  1:564463‑M1/143‑69 (MQ=255)
                                                                           tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                    <  1:622694‑M1/143‑73 (MQ=255)
                                                                           tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACGTACCGCACAACAAACTAAggaaggtgcgaacaagtcactgatatgagataatgtttgtcatctggagacatagaacagggatcatcatga                                                                    >  2:518490‑M1/1‑71 (MQ=255)
                                                                           gataaataatCACTTTCATGCAATAACAGAAACGTAGCTGTTAAACAGACACTTACCGCACATCAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                    <  1:367372‑M1/142‑73 (MQ=255)
                                                                            tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTCAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTCGTTTAAt                                                                   <  1:486964‑M1/77‑1 (MQ=255)
                                                                            tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcacaccacaaCGATTTAAATACAAAGAAACGCAACAATCAACTTAATGTCAATGAAATGTTTTACATATATTAAACACATGTTTAAt                                                                   <  2:478556‑M1/77‑1 (MQ=255)
                                                                            tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttaaacgcttattcgcaacttacATAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTATAAATATCTTAAACACTTATTTAAt                                                                   <  2:221307‑M1/77‑1 (MQ=255)
                                                                            tcaaacatgaagaaatgaaatgactgagtcaaccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGACAACAATCAACTTAATATTAATAAAATGTTTTACATAAATAAAACACTTGTTtaaa                                                                   <  2:408393‑M1/77‑2 (MQ=255)
                                                                             taaagatgaagaaaggacatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAACTCAAATAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATg                                                                  >  1:653284‑M1/66‑143 (MQ=255)
                                                                                acatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACCTAATGTTAATGAAATGTTTTAACTATATTAACCCCTTGTTCAATGCgg                                                               <  2:161943‑M1/81‑1 (MQ=255)
                                                                                    tCACTATCACGCAATCCCAGATAAGCTATTTTTAAAAAGACACTTAGCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgatatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac                                                           <  2:480439‑M1/143‑82 (MQ=255)
                                                                                     cACTTTCATGCAATACCAGATAAGCTATGTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact                                                          <  2:341625‑M1/143‑83 (MQ=255)
                                                                                       gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCa                                                        >  1:244419‑M1/56‑143 (MQ=255)
                                                                                       gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCa                                                        >  2:253288‑M1/56‑143 (MQ=255)
                                                                                        tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac                                                       <  1:727404‑M1/143‑86 (MQ=255)
                                                                                             acatgactgcgtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTacac                                                  >  1:249709‑M1/50‑143 (MQ=255)
                                                                                               cAACACCGGATAAGCTATTCTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcc                                                <  1:372590‑M1/143‑93 (MQ=255)
                                                                                                  tACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagacataaacttacctccgccggc                                             >  2:550828‑M1/1‑48 (MQ=255)
                                                                                                  tACCAGATAAGCTATTTTTAAACAGACACTGACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac                                             <  2:144424‑M1/143‑96 (MQ=255)
                                                                                                   ctgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACGTGTTTAATGCGGAGAATCAGTAGACTAtttt                                            <  1:607516‑M1/100‑1 (MQ=255)
                                                                                                      agtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCtt                                         >  2:531673‑M1/41‑143 (MQ=255)
                                                                                                      agtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCtt                                         >  1:591621‑M1/41‑143 (MQ=255)
                                                                                                      aGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtg                                         <  1:180584‑M1/143‑100 (MQ=255)
                                                                                                       gtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCCACATAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTta                                        <  1:272342‑M1/104‑1 (MQ=255)
                                                                                                              tATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagacatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc                                 >  1:245581‑M1/1‑36 (MQ=255)
                                                                                                               aTTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                >  1:181283‑M1/1‑35 (MQ=255)
                                                                                                               aTTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                <  1:402260‑M1/143‑109 (MQ=255)
                                                                                                                 aagcatttccccccttattcgcacctgccCTAAGTGAATACAAAGAACGGCAACAATCAACTTAATGTGACTGAACTGTGTTACATATAGTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACAtt                              >  1:145068‑M1/30‑143 (MQ=255)
                                                                                                                  tttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagta                             <  2:716567‑M1/143‑112 (MQ=255)
                                                                                                                        gccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAtt                       >  1:482696‑M1/23‑143 (MQ=255)
                                                                                                                          gACACTTCCCGCACGACAAACTAAggacggtgcgaacaagtccctggtatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                     <  2:575835‑M1/143‑120 (MQ=255)
                                                                                                                            cgcttattcgcaccttccCTCATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTatat                   <  1:286637‑M1/125‑1 (MQ=255)
                                                                                                                            cgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTatat                   <  1:223784‑M1/125‑1 (MQ=255)
                                                                                                                               ttACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgagctcaccagtaagcgccgtcagac                >  1:266473‑M1/1‑19 (MQ=255)
                                                                                                                                tattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATc               <  1:358175‑M1/129‑1 (MQ=255)
                                                                                                                                 aCCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacca              <  1:361959‑M1/143‑127 (MQ=255)
                                                                                                                                   cGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccaga            >  1:176087‑M1/1‑15 (MQ=255)
                                                                                                                                        aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtacgcgccgtcagacgagaaaata       >  1:93232‑M1/1‑10 (MQ=255)
                                                                                                                                        aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga       >  1:359981‑M1/1‑10 (MQ=255)
                                                                                                                                        aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccacaaaaga       >  2:54362‑M1/1‑10 (MQ=255)
                                                                                                                                          ttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTg     <  2:599046‑M1/139‑1 (MQ=255)
                                                                                                                                          caaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga     <  1:85706‑M1/143‑136 (MQ=255)
                                                                                                                                           aaaCGAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagat    <  1:7042‑M1/143‑137 (MQ=255)
                                                                                                                                            ttctaAggaaaatccgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatt   <  1:60756‑M1/141‑138 (MQ=255)
                                                                                                                                            aaCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatt   >  2:109975‑M1/1‑6 (MQ=255)
                                                                                                                                             aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattt  >  1:50076‑M1/1‑5 (MQ=255)
                                                                                                                                              |                                                                                                                                             
GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATT  >  NC_000913/1979344‑1979627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.