New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 292690158 (0.890)3 (0.050) 3/270 9.8 5.2% coding (594/1365 nt) ygdH UPF0717 family protein
?NC_000913 = 2926911 55 (0.890)coding (604/1365 nt) ygdH UPF0717 family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTCTGCTGGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGAAGCG  >  NC_000913/2926761‑2927039
                                                                                                                                            |                                                                                                                                          
gtCTGCTGGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGAGATGCAAGCGCCGATGAAAGGTGCTGCGGt                                                                                                                                          >  1:726367/1‑143 (MQ=255)
  ctgcggGGGCGGTCGCTCAATTAGCGGAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCg                                                                                                                                        <  1:66240/143‑1 (MQ=255)
  ctgcggGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCg                                                                                                                                        <  1:1017564/143‑1 (MQ=255)
    gctgGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGGAGCGCCGCTGAAAGGTGCTGGGGTCGGa                                                                                                                                      >  2:589253/1‑143 (MQ=255)
       ggggCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGacac                                                                                                                                   >  2:622552/1‑143 (MQ=255)
         ggCGGGCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACAcgc                                                                                                                                 <  1:692259/143‑1 (MQ=255)
               cacgcgcttAACGAAAACGAGGATTGGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCgcagca                                                                                                                           <  2:891706/136‑1 (MQ=255)
                aCTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGcagcag                                                                                                                          >  1:147517/1‑143 (MQ=255)
                aCTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGGCGTTCTGCGCTGCAGGCGCCGATGAAACGTGCTGCGCTCGGAAACGCGgagcag                                                                                                                          >  1:973991/1‑143 (MQ=255)
                aCTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTAGGCCTGCGTGAGCTGAATATCTGCACCCGCTGTGGTCCGGGAGCGATGGCAGCGCCGATGACAGATGCTGCGGGCGGACACGCgcagcgc                                                                                                                          >  2:480711/1‑141 (MQ=255)
                    aaTTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGtt                                                                                                                      >  1:918419/1‑143 (MQ=255)
                      ttAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGACAGGTGCTGCGGTCGGCCACGCGCCGCGGCGTTAc                                                                                                                    >  2:321423/1‑143 (MQ=255)
                         aCGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAGCCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACaaa                                                                                                                 <  1:852271/143‑1 (MQ=255)
                             aaccatgTATTTGTATGCCCGTCGCGTCGGAAACCGCCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACa                                                                                                             <  1:268594/137‑1 (MQ=255)
                                cGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTc                                                                                                          <  2:973216/143‑1 (MQ=255)
                                cGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTc                                                                                                          <  2:970436/143‑1 (MQ=255)
                                    tATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTCCCCCGGCTGTGGGCCGGGAGCGATGGCAGCGCCGATGAAAGGGGGTGCGGTCGGACACGCGCGGCAGTGTTACAAAGACGGTCgctc                                                                                                      >  1:714319/1‑140 (MQ=255)
                                    tATTTGTATGCCCGTCGCGTCGGAAACCAGCTCGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCCGCGTTACAAAGACAGTCgctg                                                                                                      >  2:608620/1‑140 (MQ=255)
                                      tttGTATGCCCGTCGCGGCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTa                                                                                                    <  1:284746/143‑1 (MQ=255)
                                        tggcgcgccGTCGCGTCGGGAACCCGCTGGGCCTGGGTGAGCTGAATATCGGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCTGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTAtt                                                                                                  <  2:690323/136‑1 (MQ=255)
                                           aTGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCGGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGt                                                                                               <  1:1046611/143‑1 (MQ=255)
                                            tGCCCGTCGCGTCGGAACCCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTa                                                                                              <  1:305976/143‑1 (MQ=255)
                                             gCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTAt                                                                                             <  2:1116763/143‑1 (MQ=255)
                                               ccGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGCTTTATTGGTATGa                                                                                           >  2:787476/1‑143 (MQ=255)
                                                     cgtcgGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGc                                                                                     >  2:248432/1‑143 (MQ=255)
                                                      gtcgGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGcc                                                                                    <  1:546923/143‑1 (MQ=255)
                                                      gtcgGAAACCAGCTGGGCCTGCGTGAGCTCAATTGCTGCACCGGCTGTGGTCCGGGAGCGATTGAAGCGCCGATGAATGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGcc                                                                                    <  2:635365/143‑1 (MQ=255)
                                                              ccAGCCGGGCCTGCGTGAGGGGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGACAGTCACGCGGAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTa                                                                            <  1:491038/143‑1 (MQ=255)
                                                               cAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTAt                                                                           <  1:580361/143‑1 (MQ=255)
                                                                   tGGGCCGGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATcgcc                                                                       <  1:622552/143‑1 (MQ=255)
                                                                     ggCCGGCGTGAGCTGAATATGTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATAAAAGGTGCTGCGGTTGGACACGCGCAGCAGCGTTACAAAGACAGTCGTGTTATTGGTATGACAGAGCCGTCGATTATcgccgc                                                                     <  1:818457/143‑1 (MQ=255)
                                                                       ccTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTg                                                                   >  2:331877/1‑143 (MQ=255)
                                                                       ccTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGAACTGCGATCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTg                                                                   >  1:909951/1‑143 (MQ=255)
                                                                          gCGTGAGCTGAATACCTGCCCCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAAc                                                                <  1:273247/143‑1 (MQ=255)
                                                                               aGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGCTCTGACACGCGCAGCAGCGTTACCAAGACAGCCGTTCTCTCGGTACGACAGATCCGTCGCTGACCGCCGCTTACCCGCCt                                                           >  1:996102/1‑143 (MQ=255)
                                                                                        tCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTg                                                  <  1:248432/143‑1 (MQ=255)
                                                                                         cggCACCGGCTTTTGTCCGGGAGCGATGGAAGCGCTGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTgg                                                 <  1:21628/141‑1 (MQ=255)
                                                                                          tgcgctggCTGTGGTCCGGGTGCGAGAGAAGCGCCGATGAAAGGTTCTGCGGTCGGACACGCGCAGGAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGt                                                <  2:998341/137‑1 (MQ=255)
                                                                                          tGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGt                                                <  2:19612/143‑1 (MQ=255)
                                                                                          tGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGt                                                >  1:567189/1‑143 (MQ=255)
                                                                                               cGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTTGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACg                                           <  1:608620/143‑1 (MQ=255)
                                                                                                        tCCGGGAGCGATGGCAGCGCCGATGAAAGGCGCTGCGGTCGGACACGCGCGGGAGCGTTACAAAGACAGTCGTCTTATTGGTACGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGatca                                  <  2:944098/143‑1 (MQ=255)
                                                                                                        tCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGGCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGatca                                  <  2:527463/143‑1 (MQ=255)
                                                                                                          cGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGatcatc                                >  1:905714/1‑143 (MQ=255)
                                                                                                              aggggtGGAAGCGCCGATGCAAGGTGCTGCGGTCGGACACGCGCAGCGGCGTTACAAAGACAGTCGGTTTATTGGTAGGACAGAGCCGTCGATGATCGCCGCTGCACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGc                            <  2:1049783/138‑1 (MQ=255)
                                                                                                               gCGATGGAAGCGCCGATGGAGGGTGCTGCTGTCGGACACTCTCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGcc                           <  2:808212/143‑1 (MQ=255)
                                                                                                                 gATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGATTAAATGGTATGACAGAGCCGTCGATTATCGCCGCTGAACAGCCTAACCCGCTGGTCAACGAATTCATCAGCATGCCAg                         >  2:453456/1‑143 (MQ=255)
                                                                                                                  aTGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTCTCTCCGCTGCACCGCCTAACCCGCTGGTCAATGACTTGCTCCACCTGCCata                        >  1:763761/1‑141 (MQ=255)
                                                                                                                  aTGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCCGCGTGCCAGa                        >  1:127752/1‑143 (MQ=255)
                                                                                                                        gcgcCTATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGa                  <  2:474892/143‑1 (MQ=255)
                                                                                                                          gcCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGaaa                <  2:147517/143‑1 (MQ=255)
                                                                                                                            cGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATCTCGaaaca              >  1:713246/1‑141 (MQ=255)
                                                                                                                            cGAGGAAGGGTGCTGCGGTCGGCCACGCGCAGCAGCGTCACAAAGACCGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGaaaaa              <  1:699713/143‑1 (MQ=255)
                                                                                                                             gATGAAAGGTGCTGCGGTCGGACACGCGCAGCTCAAATACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAAc             <  2:1126089/143‑1 (MQ=255)
                                                                                                                                ggacggggctgcGGCTGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATGATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTc          <  2:912248/136‑1 (MQ=255)
                                                                                                                                gAAAGGTGCTGCGGTCGGACACGGGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTc          <  1:969457/143‑1 (MQ=255)
                                                                                                                                     gTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGaa     <  1:818252/143‑1 (MQ=255)
                                                                                                                                        ctgcGGTCGGACACGCGCAGCAGGGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAACACCTCTGGAAGCg  >  2:1152382/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                          
GTCTGCTGGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGAAGCG  >  NC_000913/2926761‑2927039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.