| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,951,735 | Δ326 bp | pseudogene (194‑519/663 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3951735 | 3952060 | 326 | 45 [0] | [1] 45 | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3951734 | 0 (0.000) | 42 (0.690) | 37/268 | 0.8 | 100% | pseudogene (193/663 nt) | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
| ? | NC_000913 | 3952061 = | 0 (0.000) | pseudogene (520/663 nt) | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted | |||||
CGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGC > NC_000913/3951592‑3951874 | cgcgcgtcccggtGACGCTAGCTGCGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAA < 2:9572‑M1/137‑1 (MQ=255) aTCCCGGTGACGCTATCTACGCGCCGTCGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgacca < 1:670823‑M1/143‑6 (MQ=255) tCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccag < 1:196722‑M1/143‑7 (MQ=255) ggTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGGAAgaccgggttg > 1:651964‑M1/1‑133 (MQ=255) gACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGAGCGTAAACCTGCGGATTGCGGCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaag < 2:1119247‑M1/143‑14 (MQ=255) cGCTATCTACGCGCCGCTGTTGTTAAGCCAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACGACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcg < 2:1113766‑M1/143‑16 (MQ=255) tCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGCAAgaccaggttgaagcggcact > 1:1045329‑M1/1‑123 (MQ=255) cgcgCCGTTGTTGTGAAAACAACTGTCGGATCGTGAAACTTCGTATGGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgac < 2:1126647‑M1/143‑25 (MQ=255) gcCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgccgcggccctcgacccc > 1:916779‑M1/1‑116 (MQ=255) cGTTGGTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccat < 1:462215‑M1/143‑30 (MQ=255) gttgttAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGCGCCGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCAGAAAgaccaggttgaagcggcactgcacaacatgctg > 1:5064‑M1/1‑110 (MQ=255) ttAAGACAGCTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCGCACTCGCCCGGAAAgagcgggttgaagctgcactcgacaccatgctgaaca < 2:143091‑M1/143‑38 (MQ=255) ttAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaaca > 2:515960‑M1/1‑106 (MQ=255) ttAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggtcgaagcggcactcgacaccatgctgacca > 2:364408‑M1/1‑106 (MQ=255) ttAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggatgaagcggcactcgacaccaggctgaaca > 2:678638‑M1/1‑106 (MQ=255) aacTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgg < 1:691240‑M1/143‑45 (MQ=255) aacTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgaacccatgctgaacagcgaggg > 2:855606‑M1/1‑99 (MQ=255) cggtcGGACCCTCAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGGGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggc < 1:35134‑M1/141‑47 (MQ=255) cTGTCGGATCGTACACCTGCGGCGTGCGTCGTGACCACGGATGCGGGGCAGCACTATATGTGCGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggc < 2:668048‑M1/143‑47 (MQ=255) gTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccagggtgaagcggcactcgacaccatgctgaacagtgatgggcca > 1:1084237‑M1/1‑95 (MQ=255) tCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACCTCGCCCACACTCGCCCGGACAgacccggttgaagcggcactcgacgccatgctgaacagtgatgcgccat > 1:729654‑M1/1‑94 (MQ=255) cGTAAACCTGCGGATTGCGTCGAGCCGACAGAGGTGGGACCTGACCATATTCGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgc < 1:843183‑M1/143‑56 (MQ=255) gTAAACCGCCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgct < 1:407068‑M1/143‑57 (MQ=255) tAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgctt > 1:202144‑M1/1‑86 (MQ=255) aaaCCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttc < 1:450469‑M1/143‑59 (MQ=255) aaaCCTGCGGAGTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttc < 1:930878‑M1/143‑59 (MQ=255) cTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctggacagtgatgggccatacctgctgcatgt > 1:208296‑M1/1‑81 (MQ=255) gtggcgtCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaat < 2:794296‑M1/140‑69 (MQ=255) gtcgtGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacg > 1:651850‑M1/1‑70 (MQ=255) aCCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatccctgcttcatgtctcaatcgacgaccttg > 1:355180‑M1/1‑64 (MQ=255) gcacagCTGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgagcaggttgaagcggaaatcgtcagcatgctgaacagtgatgggcaatacctgcttcatgtctcaatcgacgaacttga < 2:247137‑M1/142‑81 (MQ=255) aGATGTGGGGCAGCACGAGGTGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaatcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaac < 2:928809‑M1/143‑85 (MQ=255) gtgGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtct > 1:1004260‑M1/1‑55 (MQ=255) ggggCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctgg < 1:565813‑M1/143‑91 (MQ=255) gggCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggc < 1:1142227‑M1/143‑92 (MQ=255) ggCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgacaaggttgaagcggcacgcgacaccatgctgaacagtgatgggccatacctgcttcatgtctccatcgacgaacttgagtacgtctggcc > 1:22149‑M1/1‑51 (MQ=255) gcaCCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctg < 1:192270‑M1/143‑97 (MQ=255) cAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacacactgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgccggtgc > 2:76987‑M1/1‑43 (MQ=255) gggCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgcagcggcacgcgacaccatgctgcacagtgatgggccatacctgctccatgtctcaatcgacgcactcgagaacgtctggccgctgctgccgcgtcg > 2:237988‑M1/1‑36 (MQ=255) ggCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaaccgcgatgggccatacctgcttcatgtcccaatcgacgaacctgagcacgtctggccgctcgtgccgcccggc > 2:424831‑M1/1‑35 (MQ=255) ggCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagcgatgcgccatacctgcttcatgtctcaatcgacgaactcgagaacgtccggccgctcgtgcccgccggc > 2:35823‑M1/1‑35 (MQ=255) gcagcaCATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaaccgtgatgggccatacctgcttcatgtctcaatcgacgaacttgaggacgtctggccgctggtgccgcctggcgccagt > 1:128305‑M1/1‑29 (MQ=255) acaTCGCCCACCCTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattc < 1:948593‑M1/143‑120 (MQ=255) aaagaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcagaaatgttggagaaattatc < 1:515960‑M1/143‑141 (MQ=255) aaagaccaggttgaaccggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggctgctggtgccgcctggcgccagtaattcagaaatgttggagaaattatc < 1:687640‑M1/143‑141 (MQ=255) | CGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGC > NC_000913/3951592‑3951874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |