Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 56 [0] [0] 57 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)53 (0.880) 45/264 0.3 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTT  >  NC_000913/3815801‑3816083
                                                                                                                                            |                                                                                                                                              
acctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaatttgccagcgccaccttatgcCGt                                                                                                                                              >  2:607984‑M2/141‑143 (MQ=255)
 cctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgttcctcatcttaattttatagtgtgaaaaaaaaggcgactcatcagtcgccttaaaaatccgtttgccagcgccgccttccgcCGTc                                                                                                                                             >  1:542012‑M2/140‑143 (MQ=255)
  ctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcc                                                                                                                                            >  1:1041627‑M2/139‑143 (MQ=255)
   tgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaacggcgactcatcagtcgccttaagaatcagtttgccagcgccgccctctgcCGTtcc                                                                                                                                           >  2:809029‑M2/138‑143 (MQ=255)
   tgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaactcagtttgccagcgccgccttctgcCGTccc                                                                                                                                           <  2:143476‑M2/6‑1 (MQ=255)
   tgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgacagcgccgccttctgcCGTccc                                                                                                                                           >  2:613748‑M2/138‑143 (MQ=255)
        gctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgacgcatcngtcgccttaaaaatcagtttgcccgccccgcctgctccAGTCGCCTGCa                                                                                                                                      >  1:825035‑M2/133‑143 (MQ=255)
              cgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                                <  2:660592‑M2/17‑1 (MQ=255)
               gcaaagtcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAat                                                                                                                               <  1:383290‑M2/18‑1 (MQ=255)
                  aattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttactgttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat                                                                                                                            <  1:497217‑M2/21‑1 (MQ=255)
                   attcaatcaaccggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgctgccttctgcCGTCCCCTGCACTTCAatgatg                                                                                                                           <  2:505202‑M2/22‑1 (MQ=255)
                    ttcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                                                                          >  1:860901‑M2/121‑143 (MQ=255)
                        gtgagctggcgttgatgtggtttcatgccttcgctcctcatcttacttttgtgcagaaaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc                                                                                                                      <  1:1111748‑M2/27‑1 (MQ=255)
                         taaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCg                                                                                                                     <  2:392144‑M2/28‑1 (MQ=255)
                             ctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATCATGCGCCCGGCtt                                                                                                                 >  2:388045‑M2/112‑143 (MQ=255)
                              tggcgctcatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTc                                                                                                                <  2:277462‑M2/33‑1 (MQ=255)
                                gcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                                                              <  2:1041627‑M2/35‑1 (MQ=255)
                                 cgcttatgtggtttcatgccgtcgctcctcatcttacctttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                                                             <  2:1163600‑M2/36‑1 (MQ=255)
                                    tgattgggttccatgccttcgctccgcatcttactgtcctacggacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgcctcctgcCGTCCCCTGCACGTCAATGATGCGCCCGTCTTCGGtcat                                                                                                          <  2:490954‑M2/39‑1 (MQ=255)
                                       tatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                                                                       <  1:94073‑M2/42‑1 (MQ=255)
                                         tggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATAATTCGCCCGTCTTCCATAATCActc                                                                                                     >  2:144635‑M2/100‑142 (MQ=255)
                                                 tgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATg                                                                                             >  2:162503‑M2/92‑143 (MQ=255)
                                                   ccttcgctcctctttttactttgcttgatacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTc                                                                                           <  1:321095‑M2/54‑1 (MQ=255)
                                                                 cttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCag                                                                             >  1:54928‑M2/76‑143 (MQ=255)
                                                                  ttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagttcgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                            <  1:401161‑M2/69‑1 (MQ=255)
                                                                  ttacttgtcgacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGGCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                            <  1:504358‑M2/69‑1 (MQ=255)
                                                                  ttactgttctacagacacaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgcagccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                            <  2:562071‑M2/69‑1 (MQ=255)
                                                                   tacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACCACGCTCATGTCCGTCTCCGCGGCcgag                                                                           >  2:648705‑M2/74‑143 (MQ=255)
                                                                          ctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCaa                                                                    <  1:709929‑M2/77‑1 (MQ=255)
                                                                           tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCATTGTTGTGCCCGTCTTCGGTTATCACTACGTTCATGTCGGTCTCTGCTGCAGAGTCTGCAAc                                                                   >  1:160210‑M2/66‑143 (MQ=255)
                                                                           tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTACGACAGAGACTTcaaa                                                                   >  1:740087‑M2/66‑142 (MQ=255)
                                                                              agacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCGTGCCGGTCTCTGCGGCAGAGTCTTCAccgga                                                                >  1:357080‑M2/63‑141 (MQ=255)
                                                                               gacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCACCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAt                                                               <  1:681317‑M2/82‑1 (MQ=255)
                                                                                     gtgcgggcgacccaccagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCATTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGa                                                         <  2:860901‑M2/88‑1 (MQ=255)
                                                                                      aaaaggcgactcatcagtccccttaaaaatcagtttgcgagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt                                                        <  1:964444‑M2/89‑1 (MQ=255)
                                                                                      aaaaggccactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGGTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt                                                        <  2:464433‑M2/89‑1 (MQ=255)
                                                                                          ggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCa                                                    <  1:226039‑M2/93‑1 (MQ=255)
                                                                                             gactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCCACGTATTCCAGgtcgctcac                                                 >  1:402535‑M2/48‑139 (MQ=255)
                                                                                             gactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAc                                                 <  1:964043‑M2/96‑1 (MQ=255)
                                                                                             gactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAGCGCAAAc                                                 >  1:1158451‑M2/48‑143 (MQ=255)
                                                                                               ctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCg                                               >  2:535190‑M2/46‑143 (MQ=255)
                                                                                                  atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAACCCGCtt                                            >  1:546537‑M2/43‑143 (MQ=255)
                                                                                                  atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCtt                                            >  1:1074012‑M2/43‑143 (MQ=255)
                                                                                                   tcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCGATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTc                                           <  1:580275‑M2/102‑1 (MQ=255)
                                                                                                       tcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCACTACGTTCATGTCGGGCTCGGCGGCAGAGTCTTCAACGTATTCCAGCTCGCGaaccgctcacacg                                       >  2:132557‑M2/38‑137 (MQ=255)
                                                                                                            ttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGGGGAAAAGTCGCCAACGTCTTCGATATCGCAGACCGCTTCGCCGTTcac                                  >  1:1150172‑M2/33‑143 (MQ=255)
                                                                                                                     agtttgccagcgccgccttctgcAGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAc                         <  2:1065848‑M2/120‑1 (MQ=255)
                                                                                                                       tttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCGACGTATTCAAGATCGCAAAACGCTGCGCCGTTCACGATTCCGagag                       >  1:294037‑M2/22‑143 (MQ=255)
                                                                                                                         tgccagcgccgcctgcggcCGTCCCCTGCGCTTCAATCATTCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGaa                     <  1:1095792‑M2/124‑1 (MQ=255)
                                                                                                                          gccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGaaa                    <  1:398375‑M2/125‑1 (MQ=255)
                                                                                                                             agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAc                         >  1:52740‑M2/16‑135 (MQ=255)
                                                                                                                             agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAc                         <  2:52740‑M2/120‑1 (MQ=255)
                                                                                                                               cgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTCCACAATTCCGCCGGAAACTCCg               >  1:718597‑M2/14‑143 (MQ=255)
                                                                                                                                     cttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAGCCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAcc         <  2:157891‑M2/136‑1 (MQ=255)
                                                                                                                                       tctgcCGTCCCCTGCACTTCACTGACGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGCCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCAt       <  1:994624‑M2/138‑1 (MQ=255)
                                                                                                                                          gcCGTCCCCTGCACTTCAATGATGGGCCCTTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATccc    <  2:196148‑M2/141‑1 (MQ=255)
                                                                                                                                            cGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCtt  <  1:613748/143‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                              
AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTT  >  NC_000913/3815801‑3816083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.