New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 1207790 = | 60 (0.970) | 13 (0.240) | 12/252 | 4.4 | 20.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | NC_000913 | 1209619 = | 50 (0.910) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
Rejected: Coverage evenness skew score above cutoff. |
TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCA > NC_000913/1207649‑1207926 | tggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCCAGAATCCGTTTGGCGATATCACATCGGATGGCACGGTGCACACGGCTCTCGAAAACCtt > 2:34576/1‑143 (MQ=255) ggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTg < 1:532703/143‑1 (MQ=255) tggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCACACGGCTCTCGAAAACCCTgga > 2:920498/1‑142 (MQ=255) gAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCCCTGTGCAAACGGCTCTCGAAAACCTTGGttt > 2:987545/1‑143 (MQ=255) ggCACCCGGCGCCAGCCTGGAGAAGGCGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg < 1:384320/143‑1 (MQ=255) gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTggg < 1:57655/143‑1 (MQ=255) cctCCGGTGCCAGGCGGTAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGGGGCTGTTAAGCCGCAAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGga < 2:470989/141‑1 (MQ=17) cATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTGGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGGTGGGga > 1:1109296/1‑143 (MQ=255) agctcttGCCAGCCTGGAGAAGGGCTGGTACGACCAGTTACTTACTGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGgag < 2:87803/137‑1 (MQ=17) aTCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCACGAATCCGTTTGGCGATATCCAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGgag > 2:1037617/1‑143 (MQ=255) tCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTGAGCCGCAAGACTCCGTTTGGCGATATCGAATCGGATGGCACGGTGCGAACGGCTGTGGACAACCTGGGGAGGGgaga > 2:893241/1‑143 (MQ=17) gccGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGgaga < 1:434543/142‑1 (MQ=255) ccGGTGCCAGCCTGGCGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGgagag < 1:760585/143‑2 (MQ=255) gTGCCAGCCTGGAGACGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTTCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa < 1:54706/143‑1 (MQ=255) gCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGATACCCCTGGTTTGGGAGAAggctc > 1:113354/1‑140 (MQ=255) ccAGCCTGGAGAAGGGGTGGCACGACCAGTCACTTACCTCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAGCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctct < 2:167334/143‑5 (MQ=17) gCCTGGAGAGGGGGCGGCACGACCAGTTACTTACCGCACGGCGCGCGCTGCTGTGAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaaa < 2:261897/143‑1 (MQ=255) ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGACGGAGCAAAAc > 1:154214/1‑143 (MQ=255) tGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc > 1:220492/1‑143 (MQ=255) ggagggggggCGGCACGACCAGTTACGTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCa < 2:305289/137‑1 (MQ=255) ggcggcACGACCAGTTACGTGCCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAGCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca < 2:742048/143‑1 (MQ=255) gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGACTCCGTTTGGCGATATCAGATCGGATGGCGCTGTGGAAACGGCTCTGGGAGACCTAGGTTTGGGAGAAGGAGCAGAAGTCAGTCCGGCaa > 2:345087/1‑143 (MQ=18) gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTCGCGATATCAAATCGGATGGCACTATGCAAACGGCTCTCGAAAACATTGGATTCGGAGAAGGAGCAACACGCAATGCAGCaa > 2:33426/1‑143 (MQ=21) aCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTATCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCACTGCAGCAACGGCt > 1:585395/1‑143 (MQ=255) aCCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:844306/143‑1 (MQ=255) ccAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt > 1:175715/1‑143 (MQ=255) acttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGAc < 1:391243/143‑1 (MQ=255) ttacCGTACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAGGGCACTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAGGCGCAAAACTCAATGCAGCAACGGCTACAAGCGGACGc > 1:929176/1‑143 (MQ=18) ttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCCTGGGTTGGGAGAAGGAGCAAAACTCAGTGCAGCAACAGCTACCTCAGGACga > 2:827790/1‑142 (MQ=21) cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCGCAAACCTCAATGCAGCAACGGCTACATTAGGACGCACCg > 1:485076/1‑143 (MQ=255) gcTTCGCGCGCTGCGGTTAAGCCGCAAGAAGCCGTTTGGCGATATCAAATCGGATGGCACGGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt < 2:863835/142‑1 (MQ=255) gcgcgcTGCTGTAAAGCCGCAAGATGCGGTTTGGCGAGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 2:906847/143‑1 (MQ=25) cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCTTATCTGATGGCACTGTGCAAACGGCTCTCGAAAACCGGGGTGGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg < 1:621511/143‑1 (MQ=25) ttAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCCCTCGAAAACCTTGGTTCGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt < 1:661021/143‑1 (MQ=255) cgCCGCAAGCATCCGTTTGGCGATATCCAATCGGATGGCACTGTGCAAATGGCTCTCGAAAACCATGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt < 2:904759/142‑1 (MQ=255) ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa > 1:745219/1‑143 (MQ=255) cgggagagTCCGTTTGGCGATATCAAATGGGATGGCACTGTGCAAACAGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGGACCGGTTTCATAGCTATACCGGTTATGA‑t < 2:286642/139‑1 (MQ=37) aaGACTCCGTTTGGCGACAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑Ttgg < 1:780330/143‑1 (MQ=255) gAATCCGTTTCGCGATATCGAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑Ttggtg < 2:1050728/143‑1 (MQ=255) cGTGTGGCGATATCAAATCGGATGGCACGGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGACGTTCCTGTTTCAGAGCTATACCGGTTATGA‑TTGGTGGTAtt < 1:1065983/143‑1 (MQ=37) gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGG‑TTGGTGGTGTTg > 1:218827/1‑143 (MQ=255) ttGGCGATATCAAAACGGAGGGCACGGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAg < 1:199741/143‑1 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCaa > 1:556468/1‑143 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGGATTGGGCag > 1:162665/1‑142 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAAt < 1:741904/143‑1 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAAt < 1:958444/143‑1 (MQ=255) gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACATTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGAAAta > 1:569093/1‑142 (MQ=255) gATATCAAATCGGATGGCACTGTGCAAACGACTCTCGAAACCCTTGCTTTGGGAGAAGGAGCAAAACACAATGCAGCAACGGCTACATTAGGACGCACCGGCTGCATAGCTATACCGGTTATGA‑TTGTTGGTATTGAGCAATc > 2:449011/1‑143 (MQ=255) cAAATCTGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTaa < 1:835068/143‑1 (MQ=255) aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACATTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAGTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TGGGTGGGATTGGGCAATCAGTAATc > 2:283522/1‑143 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGGGGACATGAGCAATCAGTAATCAt > 2:832873/1‑143 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGGTTAATAGCTATACCGTTTATGG‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGt > 1:697535/1‑143 (MQ=255) aCTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg < 2:221925/143‑1 (MQ=255) gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAGGA‑TTGGTGGTATTGAGCACGCAGCAATCATCCGGTggggggg > 1:147446/1‑141 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa < 1:303097/143‑1 (MQ=255) tccataaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTAATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaa < 1:340582/138‑1 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCCGTGGGGGTGGAATGCCGCcaa > 2:769198/1‑143 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa > 1:822299/1‑143 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCCTAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc < 1:770054/143‑1 (MQ=255) ataaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑ATGGTGGTATGGAGCCATCAGTAATCAGTCAGTGGGGGTGGAATGCTGCCAAAGc > 2:152445/3‑143 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa > 1:975619/1‑143 (MQ=255) aaaaCCGTGGTTTGGGACAAGGAGCAAAACTCAATCCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATCCCCGTTATGATTTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc < 1:158066/143‑1 (MQ=255) | TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA‑TTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCA > NC_000913/1207649‑1207926 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |