| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4418516 = | 57 (0.920) | 3 (0.050) | 3/276 | 9.4 | 5.6% | intergenic (‑63/+45) | ulaR/ulaG | transcriptional repressor for the L‑ascorbate utilization divergent operon/L‑ascorbate 6‑phosphate lactonase |
| ? | NC_000913 | 4418548 = | 46 (0.770) | intergenic (‑95/+13) | ulaR/ulaG | transcriptional repressor for the L‑ascorbate utilization divergent operon/L‑ascorbate 6‑phosphate lactonase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCAACGACTTTCTCAACGGTCACAAAGCCCAATTGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATCATCGAAACCGCGCGGATAGTGGTACTCGAAGTTGTCTTTATCCA > NC_000913/4418374‑4418652 | tCAACGACTTTCTCAACGGTCACAAAGCCCAATTGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATGCCGATAAAATTTGATTTTTTTAGATCATATTTGGAATAGCCAGCAACTATTACGc > 2:1051426/1‑143 (MQ=255) aaCGACTTTCTCAACGGTCACAAAGCCCAATTGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCg > 1:770741/1‑143 (MQ=255) cTTTCTCAACGGTCACAAAGCCCAATTGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAg > 1:775002/1‑143 (MQ=255) tttCTCAACGGTCACAAAGCACAATTTTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTATATTATATTTGTTATAGCCTGGATATACTACTTCGGATCgc > 2:681386/1‑143 (MQ=255) tctcAACGGTCACAAAGCCCAATTGTGCGAGCATTTGCAGGAGGATTTGATGTCTTTGTTCTTCAGTCATGAGCTATTCCTATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAgcgc < 2:414388/143‑1 (MQ=255) cAACGGTCACAAAGCCCAATTGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGaa < 1:245878/143‑1 (MQ=255) aaCGGTCACAAAGCCCAATTGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAAc > 1:989627/1‑143 (MQ=255) aaCGGTCACAAAGCCCAATTGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAAc > 1:66709/1‑143 (MQ=255) gTCACAAAGCCCAATTGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTtct < 1:1062344/143‑1 (MQ=255) tcgcagaGCCCATGTGGGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGAGAAAATTTGATTGTTTTAGATGATATGTGAAATATCCAGGAAATACTACGCCGGATAGCGCGAACTtctc < 2:37460/137‑1 (MQ=255) acaAAGCCCAATTGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCa < 1:1076509/143‑1 (MQ=255) aaaGCCCAATTGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTCTTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGCACTTCTCCACg > 1:491999/1‑143 (MQ=255) aaaGCCCAATTGTGCGAGCAGTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACg < 2:51392/143‑1 (MQ=255) aGCCCAATTGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCt > 1:795592/1‑143 (MQ=255) ccAATTGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATACAATTTGATTTTTTTAGATGATCTTTGAAATACCCACGAAATACTACCCTCGATAGCGCGAACTTCTCCACGCTccc > 2:913179/1‑143 (MQ=255) cagttGTGGGAGCATTTCCAGGAGGATTTGAGGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTAccc < 2:36886/140‑1 (MQ=255) ttGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGt < 1:936631/143‑1 (MQ=255) cgtgCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATTAGCTATTCCGATAAAATTTGATTTTTTTAGATTATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATaaa < 2:67736/140‑1 (MQ=255) gCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCACTCAAGAGCTATTCCGATCAACTTTGATTTTCTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCAGATAGCGCGAACTACTCCACGCTACCCGGTATAAACGa > 1:212982/1‑143 (MQ=255) gtttGCAGGAGGAGTTGATGTCTTTGTGCTTCAGTCATGAGATAGAACGATAAAATTTGATTTTTTTAGATGATATATGAAATAGCAAGGAAATACTACGCAGGATAGCGCGAACTTCTCCACGCTACCCGGTATACACGACa < 2:523174/142‑1 (MQ=255) aTTTACCGGAGGATTTGATGGCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTCGATTTTTTTAGATGATATTTGAAATAGCCAGCAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACa < 2:836848/143‑1 (MQ=255) cAGGAGGATTTGATGTC‑TTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGCACTTCTCCACGCTAACCAGTATAAAAAACAGATTAc > 1:589843/1‑143 (MQ=255) aggaggATTTGATGTCTTTGTGCTCAAGCAAACTGAGATGCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATCAACGACAgctccc > 2:800371/1‑138 (MQ=255) ggaggaTTTGATGTCTTTGTTCTTCAGTCATGAGCTATGCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATATCCAGGAAATACTACGCCGGATAGCGCGAACTTCGCCACGCTACCCGGTATAAACGACAGATTACa < 2:184434/143‑1 (MQ=255) ggaggaTTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGAATAGCGCGAACTTCTCCACGCTACCCGGTATAAAAGAGAGATTACa > 2:106447/1‑143 (MQ=255) gaggaTTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGCACTTCTCCACGCTACCCGGTATAAACGACAGATTACAg > 1:302554/1‑143 (MQ=255) tttGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGTTGATATTTGAAATAGCCAGGAAATACTACTCCTGATAGCGCTAACTTCTCCCCTCTACCCGGTATATATGACAGATTACCGGAATg > 2:336452/1‑143 (MQ=255) tttGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAAGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCGACCCGGCATACACGACAGCTTACACGCATg > 2:468065/1‑143 (MQ=255) ttGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGa < 1:544297/143‑1 (MQ=255) tGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGAc < 1:639478/143‑1 (MQ=255) aTGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACtt > 1:209530/1‑143 (MQ=255) cTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAAc < 2:989627/143‑1 (MQ=255) tttGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGCAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTCCAGCACTGACTTGAACg > 2:854073/1‑143 (MQ=255) ttCAGTCATGAGGTATTCCGATAACATTTGCTTGTGTGAGATGATATTTGAAATAGCCAGTAAATACTACGCCGGATAGCGAGAACTGCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATc < 2:386888/143‑1 (MQ=255) cAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATAACTTGAACGGCAGATCCg > 2:290419/1‑143 (MQ=255) gTCATGAGCTATTCCGAGAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGt < 2:1109171/143‑1 (MQ=255) tGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGCTCac > 1:223870/1‑142 (MQ=255) tGAGCTACTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTCCCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCaa > 1:872711/1‑143 (MQ=255) gcatATTCCGATAAAATTTGACTTTTTTGGATGATAGTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCTCGTTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATa < 2:768371/140‑1 (MQ=255) aGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCaaga > 1:367354/1‑141 (MQ=255) ttCCGATAAAATGTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCCCGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGaa < 1:915014/143‑1 (MQ=255) aaaTTTGATTTTTTTAGATGATATTTGAACTAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGCCTTGAACGGCAGATCCGGTTCAATAGTGAAGCAatcat < 2:978946/143‑1 (MQ=255) aaTTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAatcatc < 2:209530/143‑1 (MQ=255) gATTTTCTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATCATCGAAAc < 2:198410/143‑1 (MQ=255) tttttAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTGCACGCAACACGGTATACACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATCATCGAAACcgcg > 1:763455/1‑143 (MQ=255) tgtAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATCATCGAAACcgcgcg < 2:253109/141‑1 (MQ=255) aGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATCATCGAAACCGCGCGGAt < 2:334157/143‑1 (MQ=255) gatgatATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATCATCGAAACCGCGCGGATa > 2:231853/1‑143 (MQ=255) atgatATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATCATCGAAACCGCGCGGATAg < 1:306693/143‑1 (MQ=255) atatTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATCGTGAAGCAATCATCGAAACCGCGCGGACAGTgg > 2:319608/1‑143 (MQ=255) tttGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATAATCGAAACCGCGCGGATCGTGGTAc > 1:80606/1‑143 (MQ=255) tGAAATAGACAGTAAATACTACGCCGGATAGCGCTAACTCCTCCACGCTACCCTGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATCATCGAAACCGCGCGGATAGTGGTACTc < 2:690331/143‑1 (MQ=255) caTAGCCAGGAAATACTACGCCGCATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATCATCGAAACCGCGCGGATAGTGGTACTCGaa < 2:307222/142‑1 (MQ=255) cAGGAACTGCGACGCCGTCTGGCGCGAACTTCTCCGCCCTACCCGTTATAGACGACAGATCACAGGAATGACTTGTGCGGGAGTTCCGGTTCAATAGTGAAGCGATCATCGAAACCGCGCGGATAGTGGTACTCGAAGTTGTc < 2:559895/143‑1 (MQ=255) aGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATCATCGAAACCGCGCGGATAGTGGTACTCGAAGTTGTCt < 1:1002731/143‑1 (MQ=255) aGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATCATCGAAACCGCGCGGACAGTGGGACTCCaacgggcct > 2:806313/1‑136 (MQ=255) actacGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATCATCGAAACCGCGCGGATAGTGGTACTCGAAGTTGTCTTTATCCa < 1:551650/143‑1 (MQ=255) | TCAACGACTTTCTCAACGGTCACAAAGCCCAATTGTGCGAGCATTTCCAGGAGGATTTGATGTCTTTGTGCTTCAGTCATGAGCTATTCCGATAAAATTTGATTTTTTTAGATGATATTTGAAATAGCCAGGAAATACTACGCCGGATAGCGCGAACTTCTCCACGCTACCCGGTATAAACGACAGATTACAGGAATGACTTGAACGGCAGATCCGGTTCAATAGTGAAGCAATCATCGAAACCGCGCGGATAGTGGTACTCGAAGTTGTCTTTATCCA > NC_000913/4418374‑4418652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |