New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	228183 =	NA (NA)	3 (0.050)	3/280	9.5	5.4%	noncoding (2425/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913	= 916812	53 (0.860)					coding (340/1659 nt)	ybjD	putative OLD family ATP‑dependent endonuclease; DUF2813 family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCAACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCGGTGCTGCGCTTGCGTGA  >  NC_000913/916671‑916954                                                                                                                                              |                                                                                                                                               atCCACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGCCACCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCt                                                                                                                                               <  1:816882/143‑1 (MQ=255) atCAACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTGTTTTTTATCGTCt                                                                                                                                               >  1:803823/1‑143 (MQ=255) atCAACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGGCt                                                                                                                                               >  1:874900/1‑143 (MQ=255) atCAACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATACACCGATGGCTCTCACCGTATTTTTTATCGTcc                                                                                                                                               >  2:569862/1‑142 (MQ=255)   cAACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCGTGCACCGGTGGCTATCACCGTGTTTTTTATCGTcctc                                                                                                                                             >  2:995373/1‑140 (MQ=255)   cAACGGGCGAGAACAGCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCTGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTCTCCCCGTATGTCATATCGTcccg                                                                                                                                             >  2:55246/1‑140 (MQ=255)    aaCGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCGCCGTCTTTTTTATCGTCTggg                                                                                                                                            >  1:271610/1‑142 (MQ=255)       gggCGAGGACATCATCTGCCTATTATTTTGTCCTTCCGGGAATCGCTGCCAGGCCGACGTCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCAGGGATGGCTATCGCCGTATTTTTTATCGTCTGGAAgg                                                                                                                                         <  2:81857/143‑1 (MQ=255)       gggCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACGGATGGCTATCACCGTATTTTTTATCGTCTGGAAgg                                                                                                                                         >  1:370380/1‑143 (MQ=255)                    atgtGCATATTATTTTGACCTTCCGCGATGCGCTTCCAGGCCCACACCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTGATCGTCTGGAAGGGGAGAGTGCGGaa                                                                                                                            <  1:481148/140‑1 (MQ=255)                    atcTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGCCGCCATGCACCGATGGCTATCACCGTATTTTTTATCGGCTGGAAGGGGagagcacggca                                                                                                                            >  2:899986/1‑136 (MQ=255)                      cTGCATATTATTTCGACCGTCCGCGAGTCGGTGCGAGGCCGAGCTCGGCCTCACCGTGATCGGCCGCTGGAAGCGTGCTGGACGCCATGCAGCGATGGCTATCACCGTATTTGTTATCGTCTGGAAGGGGAGAGTGCGGAAGa                                                                                                                          <  2:729010/143‑1 (MQ=255)                         cATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGTTATCACCGTATTTTTTATCGTCTGGAAGGGga                                                                                                                                      >  1:11997/1‑128 (MQ=255)                         cATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGTTATCACCGTATTTTTTATCGTCTGGAAGGGga                                                                                                                                      <  2:11997/128‑1 (MQ=255)                          atatTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGAGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAggcggc                                                                                                                      >  1:210950/1‑143 (MQ=255)                           tattatTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCCCCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCa                                                                                                                     >  2:299569/1‑143 (MQ=255)                           tattatTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCCATCACCGTATTTTTTATCGTCTGGCCGGGGAGAGTGCGGGAGACGGCa                                                                                                                     >  2:865430/1‑143 (MQ=255)                               attTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGt                                                                                                                 <  1:67498/143‑1 (MQ=255)                               agtttGGCCTGCCGCGGAGCGCTGCCTGGCCGACATCGGGTTCGCCGTTAGCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGt                                                                                                                 <  2:1072189/141‑1 (MQ=255)                                 tttGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGACATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGGGGGTGCGGAAGACGGCAGCGtga                                                                                                               >  2:804925/1‑143 (MQ=255)                                  tgggccTGCCGGGAAGCGCTGCGAGGCCGACATCGGGTTCGCGGTTATCGGCCGCGGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGtgat                                                                                                              <  2:821784/139‑1 (MQ=255)                                       cTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAGGGGGAGAGTGCGGAAGACGGCAGCGTGGTGacac                                                                                                         >  1:832356/1‑143 (MQ=255)                                        ttCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACt                                                                                                        >  1:133518/1‑143 (MQ=255)                                           cgcgAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCCCCGATGGCTATCACCGTATTTTTTATCGTCTGGTAGGGGCGAGGGCGGGAGACGGCAGCGTGATGACCCcgcg                                                                                                     >  1:884353/1‑143 (MQ=255)                                            gcgAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCCTGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGGGAGTGCGGCAGACGGCAGCGTGATGCCACGgcgc                                                                                                    >  1:125316/1‑143 (MQ=255)                                                    cTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGCGCGGAAGACGGCCGCGTGATGACACTGCGCAGTTTtct                                                                                            >  1:496992/1‑143 (MQ=255)                                                          ggCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGCAGGGGAGAGTGCGGCAGACGGCAGCGTGATGCCCCTGCGCAGTTTCCTCGAtca                                                                                      >  1:835403/1‑141 (MQ=255)                                                            ccGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGACGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAg                                                                                    >  2:330363/1‑143 (MQ=255)                                                             cGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGCCGGCAGCGGGATGACACTGCGCAGGTTTCTCGATAAAGa                                                                                   >  1:311617/1‑143 (MQ=255)                                                                        tCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGa                                                                        <  1:978983/143‑1 (MQ=255)                                                                          gCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGGTTTCTCGATAAAGACGGACATCCGAtt                                                                      >  2:65848/1‑143 (MQ=255)                                                                                 tCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGCTAAAGACGGACATCCGATTGATGTCg                                                               >  1:616254/1‑143 (MQ=255)                                                                                    gCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGCGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAgg                                                            >  2:369048/1‑143 (MQ=255)                                                                                     cgccTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGa                                                           <  2:144189/140‑1 (MQ=255)                                                                                     ccGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATACAGAAGGACATGCGGTTGAGGTCGCggc                                                           >  2:1022101/1‑142 (MQ=255)                                                                                       gCTGGAAGCGGGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGata                                                         <  1:801628/143‑1 (MQ=255)                                                                                           gAAGCGTGCTGGGCGCCATGGACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTaa                                                     <  1:1009268/143‑1 (MQ=255)                                                                                           gAAGCGTGCTGGCCGCCATGCACCGCTGGCTAGCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTaa                                                     <  1:672926/143‑1 (MQ=255)                                                                                            atgCGTGCTGGCCGCCCTGGACCGATGGCTATCGCCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGTCGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGCAAATCCGATGGATGTCGAGGATATTAAc                                                    <  2:981695/141‑1 (MQ=255)                                                                                            atgCGGGCTGTGCGCCATGCACCGATGGCTATCACCGCATTTTTTATCGGCGGGAAGGGGAGGGTGCGGAAGACGGCGGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAAc                                                    <  2:294269/141‑1 (MQ=255)                                                                                            aggCGTGCTGTTCGCTGTTCGCCGCTTGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATTCGATTGATGTCGAGGATATTAAc                                                    <  2:876027/141‑1 (MQ=255)                                                                                              gCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAACGa                                                  >  1:810982/1‑143 (MQ=255)                                                                                                 tGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGGTAAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCa                                               <  1:874754/143‑1 (MQ=255)                                                                                                    tGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATGAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCAGGc                                            >  1:718840/1‑143 (MQ=255)                                                                                                        cGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATGCATGTCGGGGATATTAACGCTCAGGCACGc                                        >  1:663677/1‑143 (MQ=255)                                                                                                         gCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGCCACTGCGCAGTTTTCTCGATAAAGACGGACATCCGGTTGATGCCGAGGATATTACCGCTCAGGCCCGcc                                       >  2:347397/1‑143 (MQ=255)                                                                                                            aTGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACAGCCGATTGATGACGAGGATATTAACGATCAGGCACGCAATc                                    >  1:645708/1‑143 (MQ=255)                                                                                                             tGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTGACGATCAGGCACGCCATCt                                   >  2:563507/1‑143 (MQ=255)                                                                                                                 ccGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGGTGTCGAGGAGATTAAGGATCAGGCACGGCATCTGGTg                               >  1:139352/1‑143 (MQ=255)                                                                                                                         tATCACCGTATTTTTTATCGTCTGGAAGGGGAGTGTGCGGTAGACGGACGCGTGATGCCCCTGCGCAGTTGTCTCGGTAAAGACGGACATCCGGTTGATGTCGAGGATATTAACGATCAGGGACGTTATCTCATGCGATTAAt                       >  2:324133/1‑143 (MQ=255)                                                                                                                              ccGTATTTCGTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGCACATCCGATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCgg                  <  2:1042892/143‑1 (MQ=255)                                                                                                                                gTATTTTTTAGCGTCGGGGAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCGGtg                <  2:995950/143‑1 (MQ=255)                                                                                                                                 tATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGGTGTCGAGGATATTAACGCTCAGGCACGCCAACTGGTGAGTTTCATGCCGGtgg               >  2:904820/1‑142 (MQ=255)                                                                                                                                           cggcTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCGGTGCTGCGCTTGCg     <  2:84502/140‑1 (MQ=255)                                                                                                                                            gTCTGGAAGGGGAGAGTGCGGAAGACTGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCGGTGCTGCGCTTGCGt    <  1:693572/143‑1 (MQ=255)                                                                                                                                              cTGGTAGGGGTGAGTGCGGGAGGCGGCCGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCTATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCGGTGCTGCGCTTGCGTGa  <  2:1065473/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                               ATCAACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCGGTGCTGCGCTTGCGTGA  >  NC_000913/916671‑916954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.