New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1446765	53 (1.040)	4 (0.080)	3/264	7.6	6.9%	coding (519/906 nt)	feaR	transcriptional activator for tynA and feaB
	?	NC_000913	= 1446820	58 (1.220)					coding (464/906 nt)	feaR	transcriptional activator for tynA and feaB
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCC  >  NC_000913/1446625‑1446906                                                                                                                                             |                                                                                                                                              gCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAg                                                                                                                                             >  2:95691/1‑143 (MQ=255)  cTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGttac                                                                                                                                            >  2:905375/1‑140 (MQ=255)   tATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTCTCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATCAAGTACCGGGCGCAGCAGACACACCATCGCCTGCAgcg                                                                                                                                           >  2:824001/1‑143 (MQ=255)    aTCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAgcgc                                                                                                                                          >  1:464837/1‑143 (MQ=255)      ccACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAg                                                                                                                                        >  1:249607/1‑143 (MQ=255)       cACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGc                                                                                                                                       >  2:629052/1‑143 (MQ=255)       cACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGc                                                                                                                                       >  1:658203/1‑143 (MQ=255)        aCTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATACGGACTGATGTTGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCt                                                                                                                                      >  1:207656/1‑143 (MQ=255)          tCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTc                                                                                                                                    <  1:165337/143‑1 (MQ=255)          tCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGCGGAACAGATACCCGCTGCTGAAGTACCGGGCGCAGCAGACACACCATCGCCTGGAGCGCAGCTTc                                                                                                                                    >  2:226553/1‑143 (MQ=255)                  tAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTg                                                                                                                            >  2:857527/1‑143 (MQ=255)                  tAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCCCAGCAGGCGCACCATTGCCTGGCGGGCAGCTTCACttccgg                                                                                                                            >  2:337349/1‑139 (MQ=255)                           ttggcgAATATTATTATCTATCAACGTAACCACTGTTTGAAACTGACGGTCACGACGAGGTGGAACAGATTCCCGCTGATGAAGTACAGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGaaa                                                                                                                   <  1:94388/140‑1 (MQ=255)                                gAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGAAGCTTCACTTTCTGTTTGAGAAACTGcc                                                                                                              >  2:217388/1‑143 (MQ=255)                                      tatCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTATGTATCAGAAAGTGCCGGatta                                                                                                        >  2:426434/1‑143 (MQ=255)                                        tCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGattatt                                                                                                      >  1:793590/1‑143 (MQ=255)                                         cGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTGATGTTTCATAAAGTGCCGGATTATTc                                                                                                     <  1:11601/143‑1 (MQ=255)                                              aTCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTCTCAGCAAGTGCCGGATTATACAAGct                                                                                                >  1:68679/1‑143 (MQ=255)                                                     tAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGt                                                                                         >  2:712447/1‑143 (MQ=255)                                                     tAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGt                                                                                         >  2:712459/1‑143 (MQ=255)                                                      aaCCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGACAGTGCCGCATTATGCATGCcctcagtta                                                                                        >  2:336313/1‑138 (MQ=255)                                                            tttttGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCGGCTTCACCTTCTGTTTCAGAAAGTGCCGGATTCTTCATGCTCTCGTGGAACAGGc                                                                                  >  2:25830/1‑143 (MQ=255)                                                            tttttGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGCTTGTTCCTGGCCTCCTGTAACAGGc                                                                                  >  2:631379/1‑143 (MQ=255)                                                               ttGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGAt                                                                               <  2:571571/143‑1 (MQ=255)                                                                 gAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGa                                                                             <  1:141649/143‑1 (MQ=255)                                                                 gAAACTGACGTGCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGa                                                                             <  1:261098/143‑1 (MQ=255)                                                                   aaCTGACGTTCACGACGACGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACt                                                                           <  1:713906/143‑1 (MQ=255)                                                                    aCTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTg                                                                          >  2:716738/1‑143 (MQ=255)                                                                      tGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTAGTCGTGCTCTCCTGTAACAGGCGATGACTGAg                                                                        >  2:882589/1‑143 (MQ=255)                                                                        aggctCACGACGAGGTTGAGCAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGtt                                                                      <  2:568838/139‑1 (MQ=255)                                                                        aCGGTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGtt                                                                      <  1:692678/143‑1 (MQ=255)                                                                           ttCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCa                                                                   >  2:682191/1‑143 (MQ=255)                                                                               cgacgaGTTTGAACAGATTTCCGCTGATGACGGACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCAt                                                               <  2:343779/143‑1 (MQ=255)                                                                                   gaGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGt                                                           <  1:629052/143‑1 (MQ=255)                                                                                        tGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGTCGATGCCTGAGCTACACCATGGGTAAGTc                                                      >  1:672810/1‑143 (MQ=255)                                                                                         gAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCa                                                     <  2:822408/143‑1 (MQ=255)                                                                                             aGATTCCCGCTGATGAGGGACCTGGCGCATCTGACACACCATCGCATGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGt                                                 <  2:302087/143‑1 (MQ=255)                                                                                               aTTCCCGCTGATGAAGTACCGGACGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACCTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATTGGTAAGTCAGCGTcc                                               <  2:769108/143‑1 (MQ=255)                                                                                                   ccGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTCTTCATGCTCTCCTGTAAACGGCGATGACTGAGTTGCACCCTGGGGAAGTCAGCGGCCAGTc                                           >  2:258933/1‑143 (MQ=255)                                                                                                             aGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCa                                 >  1:815249/1‑143 (MQ=255)                                                                                                             aGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATACATGCTCTCCTGTAACAGGCGATGACGGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCa                                 >  2:804794/1‑143 (MQ=255)                                                                                                              gTACCGGGCGCAGCAGACACACCATCGGCTGTAGCGCAGCTTCACTTTCGGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAg                                <  2:890699/143‑1 (MQ=255)                                                                                                               tACCGGGGGCAGCAGACACGCCAGCGCCTGTAGCGCAGCTTCACTTCCTGTGTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTACCAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTACAGTCTTTCTTCGCAGa                               <  2:505030/143‑1 (MQ=255)                                                                                                                   gggCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAgg                           >  1:805686/1‑143 (MQ=255)                                                                                                                   gggCGCAGCAGACACACCATCGCCTGTACCGCAGCGTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTCACAGCCGATGACTGCGCTGCACCACGGGTCAGCCAGCGGCCAGCCTTTCCGCGCAGATAgg                           >  2:848216/1‑143 (MQ=255)                                                                                                                    ggCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGt                          <  2:464837/143‑1 (MQ=255)                                                                                                                    ggCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGGTGCACCATGGGTAAGTCAGCGTCCAGTGTGTGTGCGCAGATAGGt                          >  1:430692/1‑143 (MQ=255)                                                                                                                      cgcAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGttt                        >  1:651758/1‑143 (MQ=255)                                                                                                                           aagACACACCATCGCCTGGAGCGCAGCTTCACGTTCTGTTGCAGAAAGTGCCGGATTATGCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGAt                   <  1:263892/142‑1 (MQ=255)                                                                                                                             gACACCGCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATgg                 <  1:95691/143‑1 (MQ=255)                                                                                                                             gACACACCTCCGCCTGTAGTGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGGCTTTCTGCGCAGATAGGTTTTTGATgg                 <  2:564083/143‑1 (MQ=255)                                                                                                                                         ccTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTCGTGCGCAGATAGGTTTGTGGTGGGGaaagaagggt     >  2:498170/1‑136 (MQ=255)                                                                                                                                           tGTAGCGTAGCTTTACTTTCTGTTTCAGAAAGTGGCGGATTATTCATGGTCTCCTGTAGCAGGCGATGACTGAGTTGGACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTc   <  1:803595/143‑1 (MQ=255)                                                                                                                                            gTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTcc  <  1:716738/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                              GCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCC  >  NC_000913/1446625‑1446906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.