Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2469139	2469785	647	34 [20]	[21] 25	gtrS	serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

AGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATTTTTTTCGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAGACACAAACTAATTATTAAATCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGAAACGTTTTCGAAT  >  NC_000913/2469573‑2470024                                                                                                                                                                                                                      |                                                                                                                                                                                                                                               agCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATTTTTTTCGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAGACACAAACTAATTATTAAATCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCa                                                                                                                                                                                                                       >  1:724358/1‑239 (MQ=255)      aTAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATTTTTTTCGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAGACACAAACTAATTATTAAATCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAgg                                                                                                                                                                                                                  >  1:581996/1‑239 (MQ=255)                                     ttttcttAACATTCAAAAACAATAAATCTATGCTTTTTCTTTTTTTTTCGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAGACACAAACTAATTATTAAATCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACa                                                                                                                                                                                   <  2:724358/234‑1 (MQ=255)                                                                                                    cTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAGACACAAACTAATTATTAAATCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAAAAACGGGAATAAAATACCATCGTAtttttgttga                                                                                                                    >  2:469158/1‑233 (MQ=255)                                                                                                                    aTTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAGACACAAACTAATTATTAAATCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAGTGTGTTGGGTTAg                                                                                                    <  1:469158/239‑1 (MQ=255)                                                                                                                                           tgtATTCATATTATATTTTTTTTGATAGACACAAACTAATTATTAAATCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTACATAAGTACCATGCAACATACTTCGGAAGTTATCTTTATATGAAAACAAACGGGTATAAAATGCCATCGTAAGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCgcc                                                                             >  1:1269663/1‑237 (MQ=255)                                                                                                                                                     ttatattTTTTTTGATAGACACAAACTAATTATTAAATCTGTAATATGCGTGGTGTTCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGt                                                                                                                                                                       <  2:730538/139‑1 (MQ=255)                                                                                                                                                     ttatattTTTTTTGATAGACACAAACTAATTATTAAATCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGt                                                                                                                                                                       >  1:730538/1‑139 (MQ=255)                                                                                                                                                                ttGATAGACACAAACTAATTATTAAATCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGcc                                                                                                                                    <  1:317832/163‑1 (MQ=255)                                                                                                                                                                ttGATAGACACAAACTAATTATTAAATCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGcc                                                                                                                                    >  2:317832/1‑163 (MQ=255)                                                                                                                                                                                       aaaTCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTGATCTTTATATGAAAAGCAACGGGTATAAAATGCCATCGTAGGTTGATGATAAGAGAGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTGGGAACGaaagtttt                                 >  2:323793/1‑234 (MQ=255)                                                                                                                                                                                         aTCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTa                                                                                                                                                                                             <  2:746483/81‑1 (MQ=255)                                                                                                                                                                                         aTCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTa                                                                                                                                                                                             >  1:746483/1‑81 (MQ=255)                                                                                                                                                                                             gTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAAt                                                                                                                                                                                                       >  1:363239/1‑67 (MQ=255)                                                                                                                                                                                             gTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAAt                                                                                                                                                                                                       <  2:363239/67‑1 (MQ=255)                                                                                                                                                                                                     cGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAGGGTGTTGGGTTAAATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGGTTCAAATCTCATaaaa                   >  2:1210621/1‑238 (MQ=255)                                                                                                                                                                                                      gtggtgTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGGGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCATGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAAAAGTTGGAACGGAATGTTTCAAATCTCATaaaaa                  >  2:416734/1‑237 (MQ=255)                                                                                                                                                                                                        ggtgTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGCTAAGTGGGTTGGGATAGATGCATGGGGAAATAAATCAGACATAACATTTGGCGCAACCCCAGCAACAGTTAGAACGAAGAATTTCAAATCTAAAAAAAAta                >  2:447292/1‑238 (MQ=255)                                                                                                                                                                                                        ggtgTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCAAATCTCATaaaaagg                >  2:1205878/1‑235 (MQ=255)                                                                                                                                                                                                              cttgcttgCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAgtgtgt                                                                                                            <  1:118282/141‑1 (MQ=255)                                                                                                                                                                                                              cttgcttgCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAgtgtgt                                                                                                            >  2:118282/1‑141 (MQ=255)                                                                                                                                                                                                                      cGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGAAACGTTTTCGaa   >  1:786579/1‑238 (MQ=255)                                                                                                                                                                                                                      cGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGAAACGTTTTCGAAt  >  1:979681/1‑239 (MQ=255)                                                                                                                                                                                                                      cGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGAAATAAATTCGACATATCATTTGGGGCAACCCCAACCGAAGTTGGAACGAAATGTTTCGAATCTCATAAAAATAAAACATTTTCaaaa  >  2:760532/1‑238 (MQ=255)                                                                                                                                                                                                                      cGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAAAATACTTCGGTAGTTATCTTTATATGAAAAACAACAGGTATAAAATGCCATCGTATGTTGATGATAAGTGAGTTGGGTTAGATGCCTGTGTTAATAAATTCGACATATCATTTGGAGCTACCCCAACAGAGGTTGGTACGGAATGTTTAGCATCTCATAAAAATGAAACGATTTCAAAt  >  2:294587/1‑239 (MQ=255)                                                                                                                                                                                                                      |                                                                                                                                                                                                                                               AGCAAATAGTTATAATTTTCCTTCCATTTTTGGTGTATTCATTAACATGCAAAAACAATAAATCTATGCTTTTGCTATTTTTTTCGTTGCTAATAATATCTACTGCTAAAAATCAATTTATATTAACCCCACTAATAGTGTATTCATATTATATTTTTTTTGATAGACACAAACTAATTATTAAATCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGAAACGTTTTCGAAT  >  NC_000913/2469573‑2470024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑