| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 825,248 | G→C | 21.3% | G287G (GGC→GGG) | ybhR ← | putative ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 825,248 | 0 | G | C | 21.3% | 96.4 / 3.5 | 54 | G287G (GGC→GGG) | ybhR | putative ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base G (19/21); new base C (10/2); total (31/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.56e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
ACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAGCGGCGAAACC > NC_000913/825014‑825482 | aCGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGGGAAACGTAACCGGAAAGGAGAATGGCGGGCACCTTCAAACCAAA‑AACGccca > 1:442325/1‑237 (MQ=255) aaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACGATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCCTAAAGAAAAA‑CAACGCGATaaaag > 1:1170016/1‑236 (MQ=255) aaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGGATCATAAAGAAAAA‑AACGCCGATAAACg > 1:932817/1‑238 (MQ=255) aaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑AACGcccgaaaaag > 1:616357/1‑230 (MQ=255) aaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGGTAATCCAAGTTCGG‑TTTTGCAGCCCTACCGGCCGGGTTTCCACCGGAGAAACGTAACCGGAAAGGGGAAAGGCGGGCATCCTAAAGAAAAA‑AACGCCCAGaaaaa > 2:919682/1‑236 (MQ=255) aCATCGGGTACCCCTCTGCCCCTGTCGTGGCCGTTACCACCAGTAGCGGCCACAACCTATCCCAAACAATACCCAGACTCGCATCCTTCAAATAAAT‑CTGTTTGGTAATGTCCGTAAAGG‑GGCAAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAAAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGAAAAA‑CACGCCGATAAACGcc < 1:586059/239‑1 (MQ=255) cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCGTCATAAAGAAAAA‑AAACCCGATAAAAGCct > 1:260705/1‑236 (MQ=255) cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCCTAAAGACCAA‑AACACCCGTAAACGCccgct > 1:170512/1‑239 (MQ=255) cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACCCCCATCAACGCct > 1:148078/1‑236 (MQ=255) cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGAATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGGATCATAAAGAGCAA‑AACCCCGATAAAAGccc > 1:937052/1‑235 (MQ=255) gcgTACGCCGCTGACCCTTCCTTGGCCTTAACCCCAAGTAGCGGCCAAAAACTATCCCACAAAATATCCAGCCTCGCTTCCTTCAAATAAAC‑CTGTTGGGTAATGTCCGTAAAGT‑GGCAAATAGGGTTAACCCACTTAAGG‑TTTGGCAGCCATACCGGCATGTTTTCCACCGGAAAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCctgctg < 1:620549/239‑1 (MQ=255) cgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACCCCGGTAAACGCCTGCcgt > 1:1166454/1‑239 (MQ=255) gTACCCCGCTGCCCCTGTGGTGGCCGTTATCACGAGTAGGGGCAAAAAATTTTTCCCCACAATACCAAGACTCCCATCCTTAAAAAAAAT‑CTGTTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAACCCACGTAAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAAAAACGTAACCGGAAGGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCtgtt < 1:389140/239‑1 (MQ=255) cccTTTGGTGCCCGTTTCCCCCAGTAGCGCCCACAAACTTTCCCCAACAATACCAGGCCCCGAATCTTTAAAAAAATT‑CTGCTTGGTAAGGCACGAAAAGG‑GGCAAATGGGGTTAACCCAGGTCAGG‑TTTTGCAGCCATCCCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACaga < 2:1166454/239‑1 (MQ=255) ggCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAAACAAA‑CACGCCGATAAACGCCCGCTGGTGGG‑GTGAACaagagggttgaa > 1:1247951/1‑228 (MQ=255) gCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCTTAAAGACAAA‑CACGCCGCTAAAAGCCCGCCGTTGTG‑TTTAACAGAGGGA‑TGAAAt > 1:762030/1‑239 (MQ=255) ccGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGA‑GGCGAATAGGGTTAATCCACTTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGTGGTCATCATAAAGACAAA‑CACCTCGATTACAGCCTCGCGTTGTGTTTGAAAagagagtaaaaac > 1:694743/1‑230 (MQ=255) tttATCCCCATTGCCGCCCACAATTTGTTCCACACAATACCAAGACT‑GCATCCCTAAAAAAAATCCTGC‑TGGGAATGTTCCTAAAATGGGGGAATAGGGTAAACCCCCGTCAGT‑TTTGGAAGCCATACCGGCATTTTTCCCACGGGAAAAACTTAACGGAAAAGGAGATTGGGGGGAAACAAAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCaa < 2:585749/238‑1 (MQ=255) gCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGGAGCCTAAAAACAAA‑AACCCCGCAAAAACCCCGCTGTTGTG‑TTGAACAACATGA‑TGAAAACAAAAAAACGAAAaccacc > 2:1014227/1‑239 (MQ=255) gCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑AACGCCGATAAACGCCCGCTGTTGTG‑TTTAACAGCGGGG‑TGAAAACCACAGACCGAATCccac > 1:459423/1‑238 (MQ=255) cacaAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATCGGGTTAATCCACGTCAGG‑TTTTGCAGCCAAACCGGCATGGTTTCCACCGGAGACAACTAACCGGAAAGGAGAATAGCGGGGATCGCGAAAACAAA‑CAACCCGAAAAAAACCACCTGTTGTG‑TGGCAAAGAGAGA‑TGAAAACACAAGACCGAAACCCCCCAg > 2:833023/1‑239 (MQ=255) acaATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGGATCCTAAAGACAAA‑CACACCGATAAACGCCTGCTGTTGGT‑TTGAAAAAATGGA‑TGAAATCAAAAAACCGAATCCCCCCAGCGATAAACCATaaa > 1:114765/1‑238 (MQ=255) tatCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACCCCGATAAACGCCGGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAAAAGACCGAATCCCACCACCGGTAAACCATAAATCAcc > 1:749689/1‑239 (MQ=255) tatCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATAACGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGAATCTTAAAGACAAA‑ACAGCCCAGAAACGCCACCTTGTGGG‑TTGTACAGAGGGT‑TGAAAACAAACAACCGAACCCCACCACCCGTAAAcacaaaaaaaca > 2:984217/1‑228 (MQ=255) cAGACTCGCATCCTTCAAATAAAT‑CTGTTTGGTAATGTCCGTAAAGG‑GGCAAATGGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATAATAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCg < 1:856289/239‑1 (MQ=255) cATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGGACAA‑CAACCCGATAAACGCCCGCTGTTTGG‑TTGAACAGAGGGA‑ATAAATAAACAAACCCAAACCACCCCACGATAAAAAAAAAAACACCAACCTaaaaaaa > 2:1188282/1‑235 (MQ=255) cATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAAAACGAATCCCACCACCGATAAACCATAAATCACCATCTTaaaagag > 1:812194/1‑235 (MQ=255) cATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCCGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCCCCACCGAGAAACCAAAAATCACCCCCGTAAAgaaa > 1:367521/1‑236 (MQ=255) cTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGGTAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAAACCGAAACCCACCAGCGCTAAACCCTAAATAACCATCGTAAAGTAGAAAAGAGCCAGCGactcg > 1:520897/1‑234 (MQ=255) cTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTTAACAGAGTGA‑TGAAATCAACAGACCCAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCgg > 1:126388/1‑239 (MQ=255) tGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATTATAAAGACCAA‑CAAGCCGGTAAAACCACGCTGTTGGG‑GTTGACAAAGGGAGTGAAAT‑AACAAAACGAATTCCACCACCAGTAAACCAAAAAACACACCCGTCAACAAGAAAAACGCCGCCCAACCGGGGAAgggg > 2:754882/1‑239 (MQ=255) atggggCGAA‑AGGGTTAAACCCCATTCGGTTTTTGCAGCCATACCGGCATTTTTTCCACCGGAAAAACGTAACGGGAAAGGAGAATGGCGGGCATAAAAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATa < 1:984217/235‑1 (MQ=255) gggTTATCCCACTTCAGA‑TTTGGAGCCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATAc < 1:20950/238‑1 (MQ=255) gTTAACCCGCGTCAGG‑TTTTGCAGCCATCCCGGAATGTTTTCCACCGGAAAAACGTAACCGGAAAGGAGAATGGCGGGAATCAAAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCa < 1:1014227/238‑1 (MQ=255) ctccgccgaaGG‑TTTTGCAGCCATCCCGGCATGTTTCCCACGGGAAAATCGTAACCGGAAAGGAGAATGGCGGTCATCAAAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGc < 1:1230393/230‑1 (MQ=255) acccccGTCAGG‑TTTGCCACCCATCCCGGCTTTTTTCCCCCGGGAAAACCGTAACCGGAAAGGATAATGGCGGGCATAAAAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGc < 1:1074978/234‑1 (MQ=255) ccggTCAGG‑TTTTGCAGCCATCCCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAg < 1:112457/236‑1 (MQ=255) ggttaGG‑TTTGGCGGCCATCCCGGCATGTTTTCCACCGAAAAAACGTAACCGGAAAGGAGAATGGCGGGCATAAAAAAGCAAAC‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTAGATA‑CGCCCAGATACCAATCGCCAGca < 1:405762/235‑1 (MQ=255) cGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGGTAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAGGGGGATTTGAAA‑GCCCCCGAAACCACTccccccca > 1:898513/1‑235 (MQ=255) cGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAAACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAAAAGCGCCAACGAACCGGGGAAGGGGAATTGAAACCGCCCA‑AAACCAATCGCCAGcc > 1:434764/1‑238 (MQ=255) cACGGGAAAAACGAACCCGAAAAGGAGATTGGGGGGAAAAAAAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGGG‑TTGAACAGAGTGA‑TGAAAGCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACg < 2:434764/239‑1 (MQ=255) cACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGGGGCCTGGAAGGGGGCGACAATTaaa > 1:1094314/1‑237 (MQ=255) cccGAAAAGGAGAATGGCGGCAAACATAAAGACAAC‑CTCGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGc < 1:964620/238‑1 (MQ=255) aCCGAAAAGGAGAATGGCGGGCATAATAAAGAAAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGc < 1:527361/239‑1 (MQ=255) cgaagaggggtaTGGGGGGCATAATAAAGAAAAA‑CACGCCGATAAACGCCGTCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCCCCAGCGATAAACCATAAATTCCCATCGTAAAGTAGAACAGCGCCAGCTATCCGGGGAAGGGGATTTGATT‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCg < 2:204276/228‑1 (MQ=255) aagggAGAGTGGCGGTAATAATAAGGCACAA‑CACCCCGTAAAACGACCGCTGTGGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGGGATAAACCATAAATCACCAGCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGAt < 2:613985/235‑1 (MQ=255) aGGAGAATGGGGGGCAT‑AAAAAAACAAACCACCCCGATAAACGCCTGTTGCTGTG‑TTGAACAGGGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGaa < 2:749689/239‑1 (MQ=255) aGGAGAATGGCGGATATAAAAAAGAAAAA‑CACGCCGATAAACGCCTGGTGTTGTG‑TTGAACAGAGTGA‑TGAAAGCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCCCAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGaa < 1:545955/239‑1 (MQ=255) catAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGTGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGGGGCTGCAATTAACGCCGGTACGGCTTTGCCGATGAAGGTCTGCCAGGGGGGGa > 2:1030022/1‑239 (MQ=255) aaagcaaaccacGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAgcg < 1:754882/230‑1 (MQ=255) aa‑CACGCCGATAAACGCCTGCTGTTGGG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CCCCAAGATCCCAACCCCCAGCACCATGGGCGCCTGGAAGGGCGCGCGATTTACACCCGGAACGGGCTTCCCGTGGAATATCGGCAAGGGGGGGAGCGGGGaaaa > 2:1033805/1‑238 (MQ=255) accacGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAGCGGCGAAAc < 1:1279645/237‑1 (MQ=255) accacGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTACCGATGAAGATCTGCCAGGTGGTGAGCGGCGAAAc < 1:749693/237‑1 (MQ=255) a‑cacGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCCCAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAGCGGGGAAAcc > 1:844732/1‑239 (MQ=255) | ACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAAT‑CTGCTTGGTAATGTCCGTAAAGT‑GGCGAATAGGGTTAATCCACGTCAGG‑TTTTGCAGCCATACCGGCATGTTTTCCACCGGAGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAA‑CACGCCGATAAACGCCTGCTGTTGTG‑TTGAACAGAGTGA‑TGAAATCAACAGACCGAATCCCACCAGCGATAAACCATAAATCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGGATTTGATA‑CGCCCAGATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCCGATGAAGATCTGCCAGGTGGTGAGCGGCGAAACC > NC_000913/825014‑825482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |