| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,383,718 | C→A | 22.4% | E82* (GAA→TAA) | ycjW ← | LacI family putative transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,383,718 | 0 | C | A | 22.4% | 117.8 / 6.2 | 65 | E82* (GAA→TAA) | ycjW | LacI family putative transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base C (41/7); new base A (2/13); total (44/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.87e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAA > NC_000913/1383488‑1383948 | ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGTCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCTGGATTGTGCGCCGTTTGTAATATCACGTCACAACTTTCTTCTTCCGCTTTGGCGGTGTTTGCATCCACAACTTccatgaaaa > 2:1071400/1‑231 (MQ=255)ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGCCGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGAAAAAATTCaaaaaaaa > 2:199012/1‑239 (MQ=255)ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTACTATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGTTGGCATGTAAAACTTACGAGaaaa > 1:1007184/1‑239 (MQ=255)ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGaaaa > 1:676171/1‑239 (MQ=255)ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATAACGTCGAAACCTTCTTCTTCACCTTTGGCGGGGATGGCATGCAAAACTTTAGAGaaaa > 2:851970/1‑239 (MQ=255) tatTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGTGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAAATTCTAGGAAAAC‑Cgg > 1:405727/1‑239 (MQ=255) cTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTCCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGAGTCTATGCAAAACTTCAACAACAAA‑CGGATAAcc > 2:902141/1‑238 (MQ=255) gCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGttt > 1:189979/1‑239 (MQ=255) ccaccGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACgg > 1:1219566/1‑239 (MQ=255) ccGGAATATCATATTTATCGGGTTGGGAAAAAAATGA‑TCACTCCGTGGGGCAACTGAGCAAAATAATGCCTTTAATCATTTTCTGCTTATTTTTGTTTTCGCTTTTTTGCAGTTCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTAAGAAAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTa < 1:1057574/239‑1 (MQ=255) tCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCa > 1:1108545/1‑238 (MQ=255) ttATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATAACCATAAt > 1:552028/1‑239 (MQ=255) aTCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGATCATAATAATGCCTTTAATCATTTTCTGCTTAATTGTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTTCGACGTTTGTAATATCCCGTCGTAACCTTCTTCTTCAGCGTTGGAGGGGGTGGCATTCAAAACTTAAGGGCAAAA‑CAGATAACCCGCC‑GTAGTGTTGGCGGAACAAGAAGAAAtacccaaaaggg > 2:1065707/1‑228 (MQ=255) cGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCa > 1:167846/1‑239 (MQ=255) cGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTACTTTTGTCCGAACGGGAAAAAAAAACCAAAAT‑GGCa > 2:93901/1‑239 (MQ=255) gAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGCTTGTGCGACGTTTGTACTATCACGTCGAAACCTTCTTCTTCCGCTTTGGCGGCGATGCTATGGAAAACTTCCGAGACAAA‑CGGATTACCCACCGGTGTTTTTGGTC‑AACGGGGAGAAATCACCaaaaagagct > 2:261425/1‑233 (MQ=255) ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGTTTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGAtt < 1:342781/189‑1 (MQ=255) ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCCAAACTTCAAAGAAAAA‑TGGATTACCCCCC‑GTTGTTTTGGGCCAAACGGTAGAAAACACCACaaaaccaaaca > 2:544640/1‑230 (MQ=255) ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGGGAAAAA‑CGGATTTCCCGCC‑GTAGTTTTGGTCGAAAGGGTAGAAAAAACCAAAAT‑ggaaaaaa > 2:128759/1‑233 (MQ=255) ttGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGAtt > 2:342781/1‑189 (MQ=255) gggCAAAAAAGGCCTCA‑TCGGCGGGCAAACTGAAAATAATAATGCCTTAAATCTTTTTCTTTTTAATTTTGTTTTCGCTTTTTTGCAGTTCTTCTGCCGGATTGTGGGACGTTTGAAATACCACGGCGAAACTTTCTTCTCCAGTTTTGGGGGTGATGGCAGGAAAAACTCAAGAAAAAAA‑CGGATTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCaaa < 1:851970/238‑1 (MQ=255) gACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAAAggc > 1:1035964/1‑238 (MQ=255) aaCTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTTCCCGCC‑TTAGTTTTGGTCGACAGGGTAGAAATCACCAAAAT‑GGCACAAAAAACCGAAAAGGGTAGGGCGC‑GGGCCAga > 2:1003052/1‑238 (MQ=255) aaCTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCa > 1:115869/1‑237 (MQ=255) gAGTATAATAATGCCTTTAATTATTTTCTTTTTAATTTTGTTTTCCCTTTTTTGCAGATCTTCTGCCGGATTGGGCGACGTTTGAAATATCACGTCAAACCTTTCTTCTCCGGTTTTGGGGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGt < 1:635890/239‑1 (MQ=255) taatGCTTTTAATCTTTTTCTGTTTATTTTTGCTTTCCTATTTTTGCAGATCTTCTGCGGGATTGTGCGACGTTTGAAATATCAGTGCGAACCTTTCTTCTTCAGTTTTGGGGGTGAGGGCTGGCAAAACTTCAAAAAAAAA‑CGGTTTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGa < 1:199012/239‑1 (MQ=255) taatCCCTTTAATCATTTTCTTTTTATTTTTGCTTTCGCTTTTTTGCAGTTCTTCTGCCGGATTGTGCGACTTTTTAAATTCCACGTCGAACCCTTCTTCTTCAGTTTTGGCGGTGATGGCATGAAAAACTTCAGAAAAAAC‑CGTATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGa < 1:128759/239‑1 (MQ=255) tGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGAt > 1:1005064/1‑237 (MQ=255) ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTATTATAACTTCGAAACCTTCTTCTTCAGCTTTGGCGGTGTTGGCATGCTAAACTTCAGCAGAAAT‑CGAATTACCCGCC‑GTAGCTTTGTTCGACTTGTTAGTAATCACCCTAAT‑AGCATCACAATCCGAAGAGGTCATCACGC‑GAGCCACCCTGCTTGGCTggatcgt > 1:91143/1‑233 (MQ=255) ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTCGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGAt > 1:150392/1‑235 (MQ=255) ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGCAGAGGGCAGCCCGC‑GGGCCCGCTTGTTTGGCTGAAACTg > 1:149865/1‑239 (MQ=255) ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATAACCATAAT‑TGCATCAAAACCCGAAGAGGTCA‑CCCGCGGGGCCAGCTTGTTTGGGTGGTaaag > 2:1291302/1‑236 (MQ=255) ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GGAGTTTTGGTCGAAGGGGGAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGACC‑GGGCCAGCCTGTTTGGccgcaactg > 1:1286818/1‑231 (MQ=255) ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTaa > 1:1261537/1‑239 (MQ=255) ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTaa > 1:489449/1‑239 (MQ=255) ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCAGAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCCC‑GGGCAAGCTTGTTTGGCTGATACTGTaa > 1:765702/1‑239 (MQ=255) ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGGTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGCCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTaa > 1:1064123/1‑239 (MQ=255) taaattgttttCTGTTTAATTTTTGTTTCGTATTTGTTCAGTTCTTCGGCGGGTTTGTGGGACTTTTGAAATATCCCGTCAAAACCTTCTTCTCCAGTTTTGGGGGTGATGGCATGCAAAACTCAAGAAAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTaa < 1:693657/232‑1 (MQ=255) aaTCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCTTCAAAACCCGAAAAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGGAAtt > 1:1070691/1‑239 (MQ=255) cTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGCAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAAAACttt > 1:1174247/1‑239 (MQ=255) tCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTTATTGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGATCGGGTAGAAATCACCATAAT‑GGCATCAAAAACCGAAGAGGTCAGCGCGC‑GGGCCAGCCTGTTTTGCTGATACTGTAATTCTTCAATGGGCCGGAAACCTTTTTc > 2:811084/1‑239 (MQ=255) cGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGTCTGATACTGTAATTCTTAAATGGCCCGGAAAACTTTTTc > 2:928133/1‑238 (MQ=255) ttgttGCAGATCTTGTGGCGGTGTGTGGCACGTTTGAAAATTCCCGTCAAACCCTTCTTCTGCAGTTTTGGCGTGGAGGGAATGCAAAACTTAAGAAAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTcgcgcg < 1:843781/236‑1 (MQ=255) aGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGt > 1:328534/1‑164 (MQ=255) aTCTTCTGCCGGATTGTGCGCCGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATTCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCCAAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGGAACTGTAATTCTTCAAAGGCCCGCAAACCTTTTTTCGGGGCTTCCcggg > 2:849119/1‑239 (MQ=255) gattggggcggcgTTTGAAAACTCACGCAGAACCCTTTTTCTGCGGTTTGGGGGGTGATGGCATGAAAAATTTAAGAAAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAg < 1:544640/231‑1 (MQ=255) tggggCGACTTTTGGAATACCACGTCGAAACCTTCTTCTTCAGCTTGGGCGGTGAGGGCATGAAAAACTTAAGAAAAAAA‑CGGATTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTg < 1:93901/235‑1 (MQ=255) tgCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGGTACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCtt > 1:651046/1‑239 (MQ=255) ttttTAATATCCCGCCAACACCTTTTTCTCCATTTTGGGCGTTGATGGAATGCAAACTTTAAAAAAAAAA‑CGAATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAg < 1:738582/238‑1 (MQ=255) aaaaTACCACGGAGAAACCTTCTTTGTCAGGTTGGGCGGTGAGGGCATGAAAATCTTAAAAAAAAAG‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑Acg < 1:1095974/237‑1 (MQ=255) cACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATa > 1:491543/1‑239 (MQ=255) cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGAATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATAACCATAAT‑GGCCTCAAAACCCGAAGAGGTCAGCGCGC‑GGGCAAGCTTGTTTGGCTTATCCTGTAATTCTTCAATGGCCCGGAACCCTTTTTCGCGCGCTTTCGGGGGGAAATTAGATTGGTTTTTCAGA‑Acgctgtaacgg > 2:744682/1‑231 (MQ=255) aaaCCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAAAACCTTTTCGCGCGCTTCCGGGGAGCTATTAGTTTGCTTATTCAGC‑ACCCGGGTTACgtcg > 1:139133/1‑234 (MQ=255) tcttcttcAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCCGGATACGGTGGAttttta > 1:196407/1‑237 (MQ=255) tttgttcAGCGTGGGGGGTGATGCAATACAAATCTTAAGAGAAAAC‑CGGATTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGAt < 1:744682/235‑1 (MQ=255) tttcttcCGTTTGGGGGGTGAGGGGATGAAAAACTTCGAAAAAAAC‑CGGTTCCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGAt < 1:647738/238‑1 (MQ=255) aGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACg > 1:901573/1‑236 (MQ=255) gCTTTAGCGGTGATGGCATGCAAAACTTCAGAGAAAAC‑TCGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGAATCAAAAACCGAAGGAGTCAGGGCGC‑GGGCCATCTTGTTTGGCTGATACTGTAATTATTCAATTGCCTGATCCACATTTTCTGGGGCTTCCGGGGGGGTCTTGATTTGCTTTTTAGCCAATGCG‑GTTACGAGGGATTTTGATAGGCCTGc > 2:278121/1‑239 (MQ=255) ggtgtcctgaaaaacCTTAAGAAAAAAA‑CTTATTCCCCGCC‑GTAGTGTTGGGCGAACGGGTAAAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 2:651046/228‑1 (MQ=255) gATCGCATGCAAACCTTCAGAGAAAAC‑AGAATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATGCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 1:261425/238‑1 (MQ=255) tgtgggttgaaaaATTGAGAAAAAAATGGGTTTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 2:552028/229‑1 (MQ=255) gggCATACAAAGCTCAAGAGAAAAC‑CGGTGTTCCCGCC‑GGAGTTTGGGTCGAACGGGTAGAAACCCCCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAata < 1:602586/238‑1 (MQ=255) ggaaTGAAAACCTTAAGAAAAAAC‑GGGATTCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAata < 1:339293/235‑1 (MQ=255) ggaaTGAAAAACTTAAGAAAAAAA‑CGAATCCCCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAata < 1:1291302/235‑1 (MQ=255) tgataacgttCAAAGAAAAA‑CGGTTTCTCCGCC‑GTACTTTTGGTACAACGGTGAGAAATCACGAAAAT‑GGCTTCAAAACCCGAAAAGGTCAGCGCGC‑GGGACTGGTTGTTTGGCTGATGCTGTAATTATTCAATTGCCCGTAACACTTTTTCGTGAACTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGGCTGCAACCCTGGAAATAGCAt < 2:58352/230‑1 (MQ=255) cAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCTCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCCGC‑ACGCGCGATCCGGGGGCTTTTGATACGCCTGCAACCCTGGCAaaatagaaaa > 2:1007842/1‑233 (MQ=255) | GGCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCC‑GTAGTTTTGGTCGAACGGGTAGAAATCACCATAAT‑GGCATCAAAACCCGAAGAGGTCAGCGCGC‑GGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGC‑ACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAA > NC_000913/1383488‑1383948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |