| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,967,845 | A→C | 19.2% | V197G (GTG→GGG) | ptsP ← | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,967,845 | 0 | A | C | 19.2% | 120.5 / 3.6 | 62 | V197G (GTG→GGG) | ptsP | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| Reads supporting (aligned to +/- strand): ref base A (28/17); new base C (3/12); total (31/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.75e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACCGTTTTTACCGCCCACTCTGCCACCGAGCCTTTATCAACCTCGGCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTGCTGTACCACCAGTACACCAAGCAACTGGCG > NC_000913/2967611‑2968080 | cctgTTTTTCCCCCCCACCCTGCCCCCG‑GGCTTTAAACACCTCCGAAAAAAATTCCCCGACGGAGCGGGGTTTCCGAAGGCGGGTGGGAGAAAAGACCAAAAAGAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATacac < 2:98722/233‑1 (MQ=255)aCCGTTTTTACCGCCCACTCTGCCACCGAGCCTTTATCAACCTCGGCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTGGCGTTCCAGG‑GCCGGATCCAGCCT‑TGATGCCTGTTAcccccg > 1:1293154/1‑237 (MQ=255) gCCCACTCTGCCACCGAGCCTTTATCAACCTCGGCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTTGTTTGCCGCTTCTTCCACGGCCCCGGTCAA‑TCGTTCGCGGTCCTAG‑GCCGGCTCCACGCT‑TGTGCCCTGATAAAACC‑GTCCCATTaaaag > 2:1281508/1‑237 (MQ=255) gCCCACTCTGCCACCGAGCCTTTATCAACCTCGGCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCCTTTTCCGCTTCTTCCACCGCCCCGGGCAG‑TCGTTCGCGTTCCAGC‑GCCGGATCCCACGT‑GGATGCCCGATACAACT‑GGTCCATTAAAgg > 2:1062448/1‑239 (MQ=255) tctttttATCAACCCGCGAAAAAAATT‑CCGGGCGGCGCCGGGTGTCCGAAAGGAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGTTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGc < 2:1293154/235‑1 (MQ=255) aGCCTTTATCAACCTCGGCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGCAACTCGTTTTCCGCTTCTTCCAGCGCCCCGGGCGG‑TCTCTCCCGTTCCCGA‑CCCGGCGCCA‑CGTGTGAAGCCTGGCACCTCT‑GCTCCCTTAAAAGGAAAGGGGcctcctt > 2:549934/1‑237 (MQ=255) aGCCTTTATCAACCTCGGCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCCTTAAAGGGAACGTGGCATCCTGc > 1:294342/1‑239 (MQ=255) aGCCTTTATCAACCTCGGCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTg > 1:436198/1‑238 (MQ=255) aGCCTTTATCAACCTCGGCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAACGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATAAACCT‑GTTCCATTAAAGGTAACGTGGCACCCTg > 1:56631/1‑238 (MQ=255) aTCAACCTGGGCAAACAATC‑CCGGACCAAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCtt < 1:683396/239‑1 (MQ=255) cTCGGCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGGAACGTGGCATCCTGCCAGCCTTCGGCa > 1:464027/1‑238 (MQ=255) cGGCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGCAACTCGTTTGCCGCTTCTTCCATCGCCCCGGTCAA‑GCGGTCACGTTCCAGA‑GCCGGGTCCAGCCT‑TTATGCCTGATAAACCT‑GGTCCATTAAAGACACCGAGGCAACCGGCCACCCTTCGACCATc > 2:406947/1‑239 (MQ=255) ggCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAACCTCTTTTTCCGCTTCTTCCCGCGCCCCGGTCAG‑GCGTTCGCGTTCCAGA‑TCCGGATCCACCGT‑TGATGCCTGATACCCCC‑TTTCCATTCAAGGTACCGCGCCACCCTCCCAccccctggccacg > 2:85209/1‑228 (MQ=255) ggCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCCGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATc > 1:53215/1‑238 (MQ=255) ggCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATc > 1:217390/1‑238 (MQ=255) gtCCGAAAGCGGGGGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCCCCGGCGGCAAAGCGTTTGCTGTAGCTGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATgcg < 1:510801/238‑1 (MQ=255) gggggCGAGTAAGAATCGAAAATGGCCGCCGTTTCTTTTTGGGCCCCGGCGGCAAAGCCTTTGCTGGAGCGGCGAAACTGGTTTGCCGGTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTcgcg < 2:536349/234‑1 (MQ=255) ggTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCC‑GTTCCCTTAAAGGTAACGTGGCATCCTGCCAGCCTTCGCCAATCCCCACACCCGGTGCTCCCGGTAATTGCCGGATTctcg > 1:407001/1‑237 (MQ=255) gTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTcgcg > 1:177079/1‑236 (MQ=255) tAAAGTCCGAAAATCGCCCCCGTTTTTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGat < 2:294342/238‑1 (MQ=255) ccGAAAATAGCCGCCGTTTCTTGTTGGGCACCGGCGGCAAAGCGTTGGCTGTAGCGGCGAAACTCGGTTGCCGCTGCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGGAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGc < 1:85209/236‑1 (MQ=255) aGCCCCCGTTTCTTTTTGGGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAgg < 1:1062448/239‑1 (MQ=255) gcgcgggggggaaaGCGTTTGCTGTAGCGGCGAACCCCGTTTCCCTCTTCTCCCAGCGCCCCGTCCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCGGCGT‑TGAGGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCGGCCAGCCTTCGGCAATCGCCACGCCAGGTGCGGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTgaga < 2:56631/228‑1 (MQ=255) gccccGGGGGCAAAGCGTTTGTTGTGGGGGCCAAATCCTTTTTCCGTTTCTTCCAGCGCCCCGGTGAG‑TCGGTCGGGTGCAAGA‑GCCGGATCCAGGGT‑TGATGCCTGATACACCA‑GTTCCATTAAAGGTACCGTGGCATCCTGCCAGCCTTCGGCAATTGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTgaga < 2:1139700/236‑1 (MQ=255) aaaGCGTTTGCTGGAGCGGCCAATCTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTGCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATCCCCCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCGTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCt < 1:654057/238‑1 (MQ=255) gtttgtgttcgcgacgAACATCTTTTGCCGCTTTTTCCGGCCCCCCGGTCAG‑CCCTTCGTGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACGCCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTGCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATc < 2:562472/229‑1 (MQ=255) tttGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCCGCGCCCCGGTCAG‑TCGTTCGAGGTCCCGA‑GCCGCATCCAGCGT‑TGCTGCCTGATACCCCT‑GTTCCATTAAAGGCAACGTGGCATCCTGCCAGCCTTCCGCCATCGCCACACCAAGAGCTGACGGTCATGCCGGGAATCTCGGCTGCCGATATTGCCCCACCAACGCAGACAACTGCT‑ACGGagaaagaaaaacagcat > 2:5396/1‑227 (MQ=255) tttGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCCG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGTGATTGCCCAAACAAGCGAGTCAACTGCG‑ACTGAGAAAGAATAACTGCCa > 1:382798/1‑236 (MQ=255) tttGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGGAAAGGGGCATCCTCCCAGCCTTCCGCAATCACCACACCCGGTGTTGCAGGCAATGAGGGGATTCGGGGCTGGCGATATTGCCCAACCCAGGCAGTC‑ACCGCGCACTGagaaagaaaaacggccc > 2:939845/1‑227 (MQ=255) aGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGGGGCa > 1:1219787/1‑239 (MQ=255) cgAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCGGCAACCTGGGTGGCAAGGGt > 1:134949/1‑239 (MQ=255) cGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GGCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCagg < 1:380559/239‑1 (MQ=255) ttttCCGTTTCTCCCGGCGCCCCGGTCCG‑TCTGTCGCGTTCCGGA‑GCCGGATCCGGCGT‑TGAGGCCTGATCCCCCT‑GTTCAATTAAAGGTAACGTGGCAGCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCaggaa < 2:924538/239‑1 (MQ=255) tttGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCaggaa < 1:1209132/239‑1 (MQ=255) ttGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGCGAAAGACAAGCTGCCACCTGGGGGGCAGGCGCAACCaggaag > 1:1104803/1‑239 (MQ=255) ttGCCGCTTCTTCCAGCGCCCCGGTCAA‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCaggaag > 1:728491/1‑239 (MQ=255) gCCCCTTCTTCCCCCACCCCGGTGAC‑CCCTTCGCGGTCCAGG‑CGCGGACCCCGAGT‑TTGTGCCTGA‑ACCCCTGGTTCGTTTAAAGGTAACGGGGCACTCTCCAAGCTTGCGGAAATCGGCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCCACGGGCGATATTGCCCAAACAAGGCATTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGTTGGCAAGCGTCACCaggaagga < 2:1161628/239‑1 (MQ=255) tcttcCAGCGCCCCGGTCAG‑TCGTTTGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGACGTCAACTCCG‑ACTGAGAAAGAGTAGCTTCCATCTGGGTGGCAACGGTGACCaggaaggtgtctc > 1:533069/1‑232 (MQ=255) tcccAGCCCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACCCCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCAc < 1:1112422/237‑1 (MQ=255) ccAGCGCCCCGGGCAG‑TCGTTCGCGTTCAAGG‑GCGGGATCCCAGGT‑TGAGGCCTGATACACCT‑GTCCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACtt < 2:464027/239‑1 (MQ=255) cAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACttt < 1:159466/239‑1 (MQ=255) gcgcCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACGCCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCg < 1:130456/239‑1 (MQ=255) ggcCCCCGGCAGTTCGGTCGGGTCCAAGA‑GCCGGGTCCGGTGT‑TGATGCCTGAAACACCC‑TGTCCATTAAAGGGACCGTGGCATCCTGCCGGCCTGCGGCAAGCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCg < 2:53215/238‑1 (MQ=255) cccGGTACG‑TCGTTGGCTTTCCAGG‑GCGGGATCCAGCGT‑TGAGTCCTGTGACCCCG‑GGTGCATTAAGGGTAACGTGGCATCCTGCCGGCCTCCGGCATACGCCACCCCAGGTGCTGGCGGTAATGCGCGGATTCGCGACTGGCGATATTGCCCAATCGAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTGCACTTTCGt < 2:382798/236‑1 (MQ=255) acggttgccgTTTCAGAGGCAGGAACCCGCGT‑TAATGCCTGATCCCCCT‑GTTCCATTAAAGGGAACGGGGCACCCTGCCAGCCTTCTGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCGCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCTCCAGGAAGGATTCTTCACTTTCGTCATACTGgcg < 2:709286/231‑1 (MQ=255) cGTTCGGGTTCCAGA‑GCCGGATCCAGCGT‑GGATGCCTGATCCCCCT‑GTTCCATTAAGGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCa < 2:882410/238‑1 (MQ=255) cgcgTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGTCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCACCTGCG‑ACTGAGAAAGAATAGCTGCCATCTTGGTGGCAAGCGTCACCAGGAAGGCTTCTTCCCTTTCGTCATACTGGCCCACctc > 1:1129020/1‑238 (MQ=255) cgcgTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGATTAGCTGCCATCTGGGTGGCAAGCGCCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAActct > 1:43456/1‑239 (MQ=255) gTTCCAGA‑CCCGGCTCCGGCTT‑TGATGCTTGATACCCCT‑GTTCCATTAAAGGTAACGGGGCATCCGGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGt < 2:436198/239‑1 (MQ=255) ccAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTAACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTg > 1:882410/1‑238 (MQ=255) cgga‑gCCGGCTCCCGGTT‑TGATGCCTGATACCCCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTGCt < 1:509362/237‑1 (MQ=255) ccGGATCCAGCGT‑TGATGCCTGATACCCCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTGCTGTac < 1:455317/238‑1 (MQ=255) cGGATCCAGCGG‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTGCTGTac < 1:5263/237‑1 (MQ=255) tCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGGATAACTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGACATACTGGCGCAACCCCCGTTGCGGTacaaacac > 2:646037/1‑233 (MQ=255) tCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTGCTGTAccacca < 1:742631/238‑1 (MQ=255) ccAGCGT‑TGATTCCTGATACCCCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTGCTGTACCACCAg < 1:406947/238‑1 (MQ=255) cAGCGT‑TGATGCCTTATACGCCG‑GTTCCATTAAAGTTAACGTGGCATCCTGCCAGCCTTCGGAAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTGCTGTACCACCAGTa < 1:1308562/239‑1 (MQ=255) gCGT‑TGGTGCCTGATACCCCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTGCTGTACCACCAGTaca < 1:435556/239‑1 (MQ=255) cGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTGCTGTACCACCAGTaccc > 1:85319/1‑237 (MQ=255) cGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGAGTTTTCCCTTTCGTCATACTGGCGCCACTCCCGTTGCGGGACCCCCACAacac > 2:998392/1‑239 (MQ=255) aTGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATCTTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAAAAGCTGCCATCTGGGAGGCAGGCGTCACCAGGAAGGATTCTTCACTTTCGTCATAAAGGGGCAACTCTCGTTGCCGTACCACCAGTA‑ACCaaacc > 2:1172694/1‑236 (MQ=255) aTGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAAct > 1:946905/1‑210 (MQ=255) aTGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTCCTGTACCACCAGACCACCAAGc > 1:546545/1‑239 (MQ=255) tGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGGCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTGCTGACCCACCAGAAAACCaacaaacgg > 2:348963/1‑232 (MQ=255) ccacCT‑GTTCCATTAAGGGTAACGTGGCCTCTGGCCAGGCTTCGGGAAGCGCCACAACAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCATACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTGCTGTACCACCAGTACACCAAGCAACTGGCg < 1:796196/237‑1 (MQ=255) | ACCGTTTTTACCGCCCACTCTGCCACCGAGCCTTTATCAACCTCGGCAAACAATT‑CGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAG‑TCGTTCGCGTTCCAGA‑GCCGGATCCAGCGT‑TGATGCCTGATACACCT‑GTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCG‑ACTGAGAAAGAATAGCTGCCATCTGGGTGGCAAGCGTCACCAGGAAGGATTCTTCACTTTCGTCATACTGGCGCAACTCTCGTTGCTGTACCACCAGTACACCAAGCAACTGGCG > NC_000913/2967611‑2968080 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |