Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC JC	NC_000913	1,293,032	IS1 (–) +8 bp	100%	intergenic (‑110/‑488)	hns ← / → tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	66 (1.160)	45/418	NT	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 1293039	0 (0.000)					intergenic (‑117/‑488)	hns/tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
*	?	NC_000913	1293032 =	0 (0.000)	64 (1.120)	46/418	NT	100%	intergenic (‑110/‑495)	hns/tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
	?	NC_000913	= 1979270	NA (NA)					noncoding (1/768 nt)	IS1	repeat region

ATTGCGACTGTTCTACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1293255‑1293032 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAA  <  NC_000913/1979270‑1979050                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATTGCGACTGTTCTACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTG                                                                                                                                                                                                                             <  1:61027/228‑1    gagcagGTTCGACTTTTCAATATTCGCATAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGC                                                                                                                                                                                                                         <  1:178213/223‑1    GCGACTGTTCTACCTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAAGACAGAAGACTGAAAGTTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGC                                                                                                                                                                                                                         <  1:676167/229‑1      GACTGTTCTACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTG                                                                                                                                                                                                                       <  1:436229/229‑1       ACTGTTCTACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGC                                                                                                                                                                                                                      >  1:322424/1‑229       ACTGTTCTACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGGAATTAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATGTTTT‑‑TTGGCGGCACAAGGgtaggg                                                                                                                                                                                                                         >  2:676166/1‑220        CTGTTCTACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCC                                                                                                                                                                                                                     <  1:17754/229‑1            cagACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATTCAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAA                                                                                                                                                                                                                   <  1:179276/224‑1              TACTTTTTATCATTCGATTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTA                                                                                                                                                                                                               <  2:178166/229‑1                    TCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATT                                                                                                                                                                                                         <  1:256439/229‑1                    TCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAAGCTCCTCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATT                                                                                                                                                                                                         <  1:484537/229‑1                     CATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAACCATCGGTGTAAATAGGGCTATATGCCCGGCCTTTTCTGGCTACTTTTATGAAAAGCTATTTA‑‑TTGGCGGCCCAAGGGGATGCTGCCAACTTACctacca                                                                                                                                                                                                        >  2:178213/1‑223                          TTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTTCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGGGGTGCTGACAACTTACTGATTTttttt                                                                                                                                                                                                   >  2:179276/1‑224                          TTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTCTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGT                                                                                                                                                                                                  <  2:322424/229‑1                                TAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCGCTGCGAAATCATCGGTGTAAATAGGGCTATATACCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGA                                                                                                                                                                                              <  1:385452/229‑1                                 AATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGG                                                                                                                                                                                           <  1:96873/229‑1                                 AATAGGGAATTCCCATAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTACACATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGG                                                                                                                                                                                           <  1:754699/229‑1                                        AATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACCAGGGGATGCTGCCAACTTACTCATTT‑AGTGTATGAGGGTGTTTTT                                                                                                                                                                                    >  2:699404/1‑229                                        AATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCCACTTACTGCTTTCAGTGT‑TGATGGGGTTTTT                                                                                                                                                                                    >  1:336854/1‑229                                           TCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCCACTTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTCATGCTCTCAACTTTCTGTTTT‑AGTTTAATATGGGGTTTTTtgg                                                                                                                                                                                 >  2:344592/1‑226                                            ccCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGG                                                                                                                                                                                <  1:699405/227‑1                                                       AACTAAGACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTATTTTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGT                                                                                                                                                                       <  1:285515/229‑1                                                          TAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTT                                                                                                                                                                  <  1:212222/229‑1                                                              ACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAACGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTATTTATTT‑AGTGTTTGATGGTGTTTTTTAGGGGCTCCAGTGGCTTCT                                                                                                                                                                >  1:566436/1‑227                                                               CAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT                                                                                                                                                             <  1:18502/229‑1                                                                    GACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGGGTTTTTGAGGTGGTCCAGTGGCTTCTGTTTCT                                                                                                                                                          >  1:311299/1‑227                                                                             GTCGTCAGCCTACGATAATCGCCCCATAAAAGGGGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCT                                                                                                                                                   <  1:137089/225‑1                                                                                GTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTGTTCTGCCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGGGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTC                                                                                                                                            >  1:442992/1‑229                                                                                     CCTACGATAATCCCCCCATAAAATGTGACATGAATCAGGAAGGTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTT                                                                                                                                       <  1:597966/229‑1                                                                                        ACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGG                                                                                                                                                                                           <  2:529181/174‑1                                                                                        ACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGG                                                                                                                                                                                           >  1:529181/1‑174                                                                                               TCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGCATGATGGTGTTTTTGAGGTGCTCCAGTGGCCTCTGTTTCTATTAGCTGGCCCTCCTGGTCAGCTATTGA                                                                                                                             >  1:696442/1‑229                                                                                                             GTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTA                                                                                                               >  1:27244/1‑229                                                                                                               GACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTTTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTTTTTTTATCAACTGTCCCTCCTTTTTCGCTATTGACGGGGGGGTGgctaa                                                                                                              >  2:481992/1‑223                                                                                                                           GAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGTGGACGCTGCCAACTTACTGATTT‑ATTGTATGATGGTGTTTTTGAGGTGCTCCAGGTGCTTCTGTTTCTATCAACTGTCCCTCCTGTTTCACTACTGACGGGGTGGTGGGTAACGGCAAAAACAC                                                                                                  >  2:106355/1‑228                                                                                                                               TTTTAACCTCACTG‑‑TCTTGGAAATCCTCGGTGTAAATAGGGTTTTATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCG                                                                                             <  2:411905/229‑1                                                                                                                                 TTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCGGTCCCTCCTGTTCAGCTACTGACGGGGTGGGGCGTGACGGCAAAAGCACGGCCGGc                                                                                           >  1:749212/1‑228                                                                                                                                         ACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACCAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCCGTTTCTATCAGCCGTCCCTCCTGTTCAGCTACTGACGGGGGGGTCCGTAACGGCAAAAGCCACGCCGGcaatccag                                                                                    >  1:75966/1‑220                                                                                                                                         ACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑TGTGTATGATGGTGTTTTTGCGGTGCTCCAGTTGCTTCTGTTTCTTTCAACTGTCCCTCCTGTTCAGCTTCTGACGGGGTGGTGCGGAACGGCATAAGCCCTGCCGGAAATCAG                                                                                     >  1:746476/1‑227                                                                                                                                          CGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATGTGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATAGTTA‑‑TTGGCGGCACAAGTTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGGGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCG                                                                                   <  1:478012/228‑1                                                                                                                                          CGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGGGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATTAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATTAGCc                                                                                   >  1:22871/1‑227                                                                                                                                                           ttgtgGTAAATAGGGTTATTTGCCGCGTTTTTGCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCATAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGTTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCAC                                                                  <  2:149259/224‑1                                                                                                                                                           TCGGTTTAAATAGGTTTATATGCGCCTTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTCCTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCCCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCAC                                                                  <  2:311299/229‑1                                                                                                                                                                         GCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGCTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCCGCTACTGACGGGGTGGGGCGTAACGGCAAAAGCACCGCCGGCCCTCACCCCTATCCCGTCTC‑TCACTGCCGGAAAACcat                                                    >  2:508336/1‑226                                                                                                                                                                           TATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGGTGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGAGTGGCGTAACGGCAAAAGCACGGCCGGCAATCAGGGTTATTTCTGCGC‑TCACTCCCGTAAAACATGc                                                   >  1:370084/1‑227                                                                                                                                                                             TATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCTTAACGGCAAAAGCACCGCCGGACAT                                                                                        <  1:288139/190‑1                                                                                                                                                                             TATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGCA                                                 >  1:11951/1‑228                                                                                                                                                                             TATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAACGCCGGAACTCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACCGGGCA                                                 >  1:469896/1‑228                                                                                                                                                                             TATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGGGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAAAGGCCAAAGCACCGCCGGACAT                                                                                        >  2:288139/1‑190                                                                                                                                                                             TATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGGGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGGGGTGCGTAACGGCCAAAGACCCCCCGGACACACCCGCCATCTCTGCTC‑TCACTCCCGTAAAAAACGGCAA                                                >  2:376000/1‑229                                                                                                                                                                                  CGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGTCGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGGCATCAGCGCGATCTCTGCTC‑TCCCTGCCGTAAAACATGGCAACTGCA                                           >  1:35459/1‑229                                                                                                                                                                                   cgtttTTTTTTGGCTATTTTTTTAAAAGGTTGTTTA‑‑TTGGGGGCACAAGGTGATGGTGCCAACTTACTGTTTT‑AGTGTATGATGGTTTTTTTGAGGTGCGTCAGTGGCTTCTGTTTCTACCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGAACCGCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGCAACTGCAG                                          <  2:27244/224‑1                                                                                                                                                                                   GCGTGTTTTTGGGCTAATTTTATGAAAAAATATTTA‑‑GTGGCGGCACAAGGTGATGCCGCCAACTTACGGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGCAACTGCAG                                          <  2:419386/229‑1                                                                                                                                                                                    ggttTTTTTTGGCTAATTTTTTGAAAAGATATTTA‑‑TGGGCGGCACAAGGTGATCGTGCCAACTTATTGATTT‑AGTGTATGAGGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGCAACTGCAG                                          <  2:674629/224‑1                                                                                                                                                                                    gGTCTTTTTTGGCTAATTTTATGAAAAGATTTTTG‑‑TTGGCGGCAAAAGGGTGTTCCGCCATCTTTCTGATTT‑AGTGTTTGAGGGGTTTTTTGAGGTGCCCCAGTGGCTTCTGTTTCTAACAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCCCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGCAACTGCAG                                          <  2:728007/227‑1                                                                                                                                                                                    ctgtTTTTCTGGCTATTTTTATGAAATGGTATTTG‑‑TTGGCGGGTCAAGGTGAGGCTGCCAACTTACGGAGTT‑AGTGTGTGACGGTGTTTGTGAGGTGCTCCAGTGGCTGCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGGCGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGCAACTGCAG                                          <  1:344592/224‑1                                                                                                                                                                                    CGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGCCGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGCAACTGCAG                                          <  1:623914/228‑1                                                                                                                                                                                    CGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTCCTATCAGCTGTCCCTCCTGTTCAGCTACTGCCGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCACTGCTC‑TCACTGCCGTAAAACATGGCAACTGCAG                                          <  1:60349/228‑1                                                                                                                                                                                     tttTTTTTTGGGTAATTTTATGAAAAGAGATTTC‑‑GTGGCGGCAAAAGGGTATGCTGCCACTTTACTGAGTG‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCGCCTGTTCAGTTACTGACGTGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGCAACTGCAGTT                                        <  2:370084/226‑1                                                                                                                                                                                               GCTAATTTTATGAAACGATATTTA‑‑TTGGCGGCACAAGGGTATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGGGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACC                              <  1:658331/229‑1                                                                                                                                                                                                    TTTTATGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGGAACTGCCGTTCACTTACACCGCTTC                         >  1:55003/1‑229                                                                                                                                                                                                     TTTATGAAAATTTATTTT‑‑TTGGCGGCACAGGGTGATGCTGCCATCTTACTGATTT‑GGTGTATGTTGGTGTTTTTGAGGTGCCCCGGTCGCTTCTTTTTCTACCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCT                        <  2:749211/229‑1                                                                                                                                                                                                         TGAAAAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTTCCTCCTTTTCAGCTACTGACGGGGTGGTGCGTAACGGCCAAAACACCGCCGGACATCAGGCCCACCCCT‑CTCTTCACTGCCGTAAAACATGGCAACTGCAGGTCACTTTACCCGCTTCTCAA                     >  1:76938/1‑228                                                                                                                                                                                                           AAAAGATTTTTA‑‑TTGGCGGCACAAGGTGATGGTGCCAATTTACTGATTT‑ATTGTATGATGGTTTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACC                   <  1:174377/228‑1                                                                                                                                                                                                             AAGATATTTA‑‑TTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGGATGATGGAGGTTTTGAGGTGCTCCATTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGCCATCAGCGCTATCTCTGCTC‑TCACTGCCGTTAAACATGGCAACTGCAGTTCACTTACAACACTTCTCAACCCGc                >  2:526375/1‑228                                                                                                                                                                                                                             CGGCACAAGGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTTTTTCTATCAGCTGTCCCTCCTGTTCAGCTAATGACGGGGTGGTGCGTCACGGCCAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑CCACTGCCGCAAAACATGGCAACTGCAGTTTAATTACACCGCTTTTCAACCCGGGAAGCACCCGAAAA  >  1:472628/1‑229                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATTGCGACTGTTCTACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGT‑‑GCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAATTTTATGAAAAGATATTTA‑‑TTGGCGGCACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1293255‑1293032 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTT‑AGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTC‑TCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAA  <  NC_000913/1979270‑1979050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.