New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3955675	168 (1.230)	4 (0.030)	4/500	NT	2.2%	coding (345/1545 nt)	ilvA	l‑threonine dehydratase, biosynthetic; also known as threonine deaminase
	?	NC_000913	= 3955888	188 (1.420)					coding (558/1545 nt)	ilvA	l‑threonine dehydratase, biosynthetic; also known as threonine deaminase
Rejected: Frequency below/above cutoff threshold.

AGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3955384‑3955675 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccgacTGGCACAAATACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGTTGGCATAACGATCAGGGCCTTCACGCCTAACCGCGCAGAAGAAAACGCGACGCCCTGCG  <  NC_000913/3955888‑3955602                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGC                                                                                                                                                                                                                                                                                                     >  1:614333/1‑288      TGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCCACc                                                                                                                                                                                                                                                                                                >  2:1076175/1‑287      TGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCC                                                                                                                                                                                                                                                                                                    <  1:1177650/284‑1      TGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCC                                                                                                                                                                                                                                                                                                    >  2:1177650/1‑284      TGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGAGCACTGCTTCTGCGGGTAACCACGCGCAGGGAGTCGCGTTTTCGTCTGCGCGGTTAGGCGTGAAGGCCCTGACCGTTATGCCAACCGCCACCGCCGACc                                                                                                                                                                                                                                                                                                >  2:1209655/1‑287             CGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATCACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGAACAGCTTTAAGCTGCGCGGCGCATACGCCATGCTGGCGGGCCTGACGGCAGAACAGCACGCGCACGGCGTCATCACTGCTTCTGCGGGTAATCCCGCCCAGGGCTTCGCGTTTTCTTCTTCGCGGCTAGGCGTGACGGGCCTGGTCGTTCTGCCCACCCCCAACGCCCACaccaacgtt                                                                                                                                                                                                                                                                                        >  2:896393/1‑280                             GCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGTGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACTGGCACAAATACGCGGTCGAGATGG                                                                                                                                                                                                                                                                        >  2:707400/1‑289                                                TACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACTGGCACAAATACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGT                                                                                                                                                                                                                                                      >  1:238345/1‑288                                                                                                          AGATCGCCAGCCAGGGCACAGCTGTAAGTTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACTGGCACAAATACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCC                                                                                                                                                                                            <  2:238345/288‑1                                                                                                                                                                                                          TTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACTGGCACAAATACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCAC                                                                                           <  1:707400/289‑1                                                                                                                                                                                                                                                                                              CGCCGACTGGCACGAATACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGTTGGCATAACGATCAGGGCCTTCACGCCTAACCGCGCAGAAGAAAACGCGACGCC       <  1:414580/289‑1                                                                                                                                                                                                                                                                                              CGCCGACTGGCACAAATACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCACGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGTTGGCATAACGATCAGGGCCTTCACGCCTAACCGCGCAGAAGAAAACGCGACGCC       <  1:126266/289‑1                                                                                                                                                                                                                                                                                                    CTGGTACAAAGGCGCGGTCGGTATGGGCGTCCTGCTGGAGCAGGTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGTGGAACCCCTGCTGCTGTGACAGTTCGCTCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGTTGGCATAACGATCAGGGCCTTCACGCCTAACCGCGCAGAAGAAAACGCGACGCCCTGCG  <  1:584145/288‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCACGGCGTGATCACTGCTTCTGCGGGTAACCACGCGCAGGGCGTCGCGTTTTCTTCTGCGCGGTTAGGCGTGAAGGCCCTGATCGTTATGCCAACCGCCACCGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3955384‑3955675 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccgacTGGCACAAATACGCGGTCGAGATGGGCGTCCTGCTGGAGCAGTTCCAGCGCCAGCGTGCCTTGCCCGGCAATCACCATCGGATGGTCGAACGGCGGCACCCAGGTGAACCCCTGCTGCTGTGACAGTTCGATCGCTTTGGCTTTCGCTTCATCAAAGTTCGCGCCGTGGAGCAGCACTTCGCCGCCGAAGCCGCGCACCGCGTCGACTTTGATGTCGGCGGTGGCGGTTGGCATAACGATCAGGGCCTTCACGCCTAACCGCGCAGAAGAAAACGCGACGCCCTGCG  <  NC_000913/3955888‑3955602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.