| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,600,870 | Δ2 bp | coding (393‑394/471 nt) | bcp → | peroxiredoxin; thiol peroxidase, thioredoxin‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,600,868 | 0 | A | . | 97.6% | 175.1 / ‑2.2 | 42 | coding (391/471 nt) | bcp | peroxiredoxin; thiol peroxidase, thioredoxin‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (19/22); total (20/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.70e-01 | |||||||||||
| * | NC_000913 | 2,600,869 | 0 | A | . | 97.6% | 178.1 / ‑2.0 | 42 | coding (392/471 nt) | bcp | peroxiredoxin; thiol peroxidase, thioredoxin‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (19/22); minor base C (1/0); total (20/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.70e-01 | |||||||||||
AGAGCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTC > NC_000913/2600729‑2601003 || agagCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGCGACAAGTCCTTCGTGGGCAAAACCTCCGATGGCATTCCTCTCATCAGCTTCCTGATTGACGCTGATGCCactc > 1:632923/1‑140 (MQ=255) gctgcgTAACTCTACGCTCCTGTCTGGTGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCaatcgaa < 2:287035/143‑6 (MQ=255) cTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCttt > 2:47032/1‑143 (MQ=255) tgaCGCCCCTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAGCCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGa < 2:541755/141‑1 (MQ=255) tCCTGTCTGATGAGGACCACCAGGTAGGGGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGAttt > 2:639547/1‑143 (MQ=255) cTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCa < 1:83562/143‑1 (MQ=255) cTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCa < 2:652801/143‑1 (MQ=255) tGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATAGCATCAGCTGCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCaa > 2:653083/1‑143 (MQ=255) gatgaGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGACAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCa < 1:460079/143‑1 (MQ=255) gatgaGGACCACCAGGTCTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCa < 2:555682/143‑1 (MQ=255) atgaGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AACCGAACATGTCTTTGACGATTTCAAACCCAg > 1:551799/1‑143 (MQ=255) gaGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCa > 1:190304/1‑143 (MQ=255) gACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATc > 1:211085/1‑143 (MQ=255) aGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCacga > 1:41533/1‑143 (MQ=255) gAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGAT‑‑AACAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACAACGTTGTGc > 1:613055/1‑143 (MQ=255) aaCAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCt < 1:204517/143‑1 (MQ=255) accactCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTg < 2:537119/138‑1 (MQ=255) aCAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGTGCAAAACCTGCGATGGCATTCATCGCATCAGATTCCTGAGTGTCGCGACTGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGGCATTGGGCTg > 2:539119/1‑143 (MQ=255) actgcggcggCTGGGGTGACGAGTCCTTCATGGGCAAACCCTACGATGGCATACCTCGCAACAGCTTGCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCTGCAATCACCTCGACGTTGTGCTGaa < 2:314700/139‑1 (MQ=255) cGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTCCGGTGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGCACATGTCTTTGACGATTTCAAACCCAGCAATCACCACGACGTTGTGCTGAACTgg < 1:223345/143‑1 (MQ=255) ggCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCAGTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGc < 2:347046/143‑1 (MQ=255) gCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACGACGACGTTGTGCTGAACTGGCt > 1:171439/1‑143 (MQ=255) gTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTgt > 1:629042/1‑142 (MQ=255) gTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCGGAAAGAgca > 1:512408/1‑143 (MQ=255) tGAAAAGTCGTTCATGGGCAAAACCTACGATGGCAGTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAacac < 1:295698/143‑1 (MQ=255) tGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGCACTGGCTGAAAGAacac < 1:671180/143‑1 (MQ=255) gtgcccccATGGCCAAACCCTCAGATGGCATTCATCGCAGTAGCTTCCTTAGTGACGCTGATGGC‑‑AATCGCACATGTCTTTGACGATTTCAACACCAGCTATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTg < 2:537679/136‑1 (MQ=255) aGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTg < 1:94384/143‑1 (MQ=255) tCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑GATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGAt > 2:11327/1‑143 (MQ=255) cTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGGCTGCTTa > 1:205561/1‑143 (MQ=255) ttCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGCTGTGCTGAACTGGCTGAAAGAAGACGCCTGACTAc > 2:471588/1‑143 (MQ=255) cAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGACCTGAATTGAAGAACGCGCCTGATTACTTTGCTcc > 1:195542/1‑143 (MQ=255) tGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTgctgg < 1:298445/143‑1 (MQ=255) cATTCATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTgctggctg > 1:101254/1‑143 (MQ=255) cATCGCATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCCGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGGGCTGGCTGCGCt > 1:230185/1‑143 (MQ=255) cATCAGCTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCgg < 1:109548/143‑1 (MQ=255) gCTTCCTGATTGACGCTGATGGC‑‑CATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGc < 2:278895/143‑1 (MQ=255) cTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCa < 2:101254/143‑1 (MQ=255) cTTCCTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCa < 1:47032/143‑1 (MQ=255) ccTGATTGACGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCCGATTCCTCTGCTCCATGCCGTGCTGGCTGCGCTTGCGGCCACCacac > 2:721751/1‑143 (MQ=255) tGATTGACGCTGATGGC‑‑GATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCt < 1:11327/143‑1 (MQ=255) aCGCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGCACCCGCCTGATTACTTTGCTCCGTTCCGTGCTGGCAGCGCATGCGGACAGCATACCTCACtta > 1:32924/1‑142 (MQ=255) gCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTtctc < 1:347777/143‑1 (MQ=255) gCTGATGGC‑‑AATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTtctc < 1:347208/143‑1 (MQ=255) || AGAGCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTC > NC_000913/2600729‑2601003 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |