| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2919069 = | 49 (1.210) | 3 (0.070) | 3/282 | 6.2 | 5.8% | coding (317/1341 nt) | gudD | D‑glucarate dehydratase 1 |
| ? | NC_000913 | 3131005 = | NA (NA) | noncoding (860/1195 nt) | IS5 | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACGGATTTT > NC_000913/2918927‑2919208 | gaagaaCAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCTGTCACGCCACGCATCGTcgtacgta > 1:437075/1‑143 (MQ=255) gagagCAGATAACCGGGCATTCCGGCTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCAGTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAg < 2:178075/142‑1 (MQ=255) agaaCAGATAACCGAGCATTTCGACTTCGCTACGCTATTAACCATCGCCCAGCAGCGATGACACGATTACCCCCAGATGCTGCCCCAGCAGATCCAGCATCGCCGCTTCTATCCGGGTAGCTACAGGAATGGAGGTACGCAgg > 1:288701/1‑143 (MQ=255) gaaCAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATGGTGGTACGGAGGt > 1:419402/1‑143 (MQ=255) gaaCAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGt > 1:299352/1‑143 (MQ=255) gATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAAt < 1:94573/143‑1 (MQ=255) aTAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGGCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGACTAGTCGTACGTAGGACAGATg > 1:114158/1‑143 (MQ=255) aCCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCt < 1:392879/143‑1 (MQ=255) aCCGACCATGTCCACTTCTCTACTCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCTAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAACTGTCt < 2:360582/143‑1 (MQ=255) ccGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTg < 1:405683/143‑1 (MQ=255) cgcgCATTGCGACTTCGCTACGCTGTTGACCACCGCCCAGCAGCGATGCCACGTTTACCCCCAGACGCTGCCGCAGGAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGc < 1:457581/140‑1 (MQ=255) gcctccGCTACGCTGTTGCCCATCGCCCCGCAGCGATGCCACGTTTCCCCCCGGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGcc < 2:453058/138‑1 (MQ=255) gACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGAACCAACATTGCCACATCTCTCCCGGTAACTACATGCATAGAGGTACGCAGCTCCAACGCCTGCAAGCAGCGcc > 2:552174/1‑143 (MQ=255) aCTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAACTGTCTGCAAACCGCGccc > 2:669915/1‑143 (MQ=255) ttCGCTACGCTGTTGACCATCGCCCAGCATCAAGGCCTCGGGTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGGAGGTCAAATGTCTGGAAACCGCGCccac > 1:732284/1‑143 (MQ=255) cgACCATCGCCCAGTAGCGATGCCACGGTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATc < 1:91126/142‑1 (MQ=255) gACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCACACCGCGCCCCCCAGCATAACGATCg > 1:449456/1‑143 (MQ=255) ccATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGCGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGc < 1:556156/143‑1 (MQ=255) cgcggaagcGATGCCGCGTTTCCCCCCGGCTGCTGCACCAGCAGATCCAGCGTTGCCGCTGCGATCCCGCGGACTTCAGGAATAGTGGTACGTAGGTCAACTGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGt < 2:178844/137‑1 (MQ=255) agcagcGATGCTACGGGTACCCCCAGACGCTGGCTCATCAGATGCAGCATTGCCGCTTCTATCCCGGTACCTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTAtt < 1:195508/143‑1 (MQ=255) gcagcGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTa < 1:244812/143‑1 (MQ=255) cACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCCAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCCGAAGTATTACGCACCAGCg > 1:624840/1‑143 (MQ=255) cACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCg > 1:459675/1‑143 (MQ=255) cGTGTACCCCCAGATGCTGCTCCCGCAGGTCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTc < 2:34737/143‑1 (MQ=255) tttACCCCCAGATGCCGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAg < 1:229530/143‑1 (MQ=255) ccccAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTCCATGAATAGTGGTACGTAGGTCACATGTCTGCAAACCGCGCACACCAGCATCACGATCGGCACAAGTCTCACGCACCCGCGTCacaccgc > 2:51507/1‑137 (MQ=255) cccAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGtt > 1:505416/1‑143 (MQ=255) ccAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGttt > 1:682404/1‑143 (MQ=255) ccAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGttt < 1:337258/143‑1 (MQ=255) ccAGATGCAGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGAAGTACGTCGGTCAAAGGGCTGCAAACCGCGCGCACCAGCATCACGAGCGGCAAAGGGAGTACGCGCGAGCGTCAGAACGctt > 2:223933/1‑143 (MQ=255) ccccAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGGCAGAACGATTTTGTATTCAc > 2:57433/1‑143 (MQ=255) cagcagATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATACTGGTACGCAGGTCAACTGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAACAGCATTCCGCACCCGCCCCAGACCGCATCTGTAATCACCCa > 2:43612/1‑143 (MQ=255) agATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCTCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGt < 2:365868/143‑1 (MQ=255) aTCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGttt < 2:332710/143‑1 (MQ=255) ccAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTCGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCGGAACGTTTTTGTATTCACCCCGCGtctca > 2:703035/1‑139 (MQ=255) ccAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTta > 1:473666/1‑143 (MQ=255) tgggcggCTTCTAAGGCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCAGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTtacctac < 2:425172/137‑1 (MQ=255) agtGCCGATTGTATCCCGGTAACTACACGACTCGTGGTACGGAAGTCAAATGTATGCAAACCGCGCCCACCAGCATCACGATTAGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGGATTCACCCATCGTTTtacctac < 2:703183/141‑1 (MQ=255) aacaccGCTTCTATCCCGGTAACTACATAAATAGTGGTACGAAGGTCAAATGTCTGCAAACCGCGCGCACCAGCATGACGATCGGCAAAAGAATTACGCACCAGCGTCAGAACGTTGTGGTCTTCACCCAGCGTTTcacctac > 2:681757/5‑143 (MQ=255) aTTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGATTTTGTATTCACCCAGCGTTTtacctac > 2:253302/1‑143 (MQ=255) ttcctgCTTCTACCCAGCTCACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTtacctacc < 2:114158/138‑1 (MQ=255) tGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTacca < 1:513638/143‑1 (MQ=255) cGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACGACCGGCGGAATCGCa > 2:542086/1‑143 (MQ=255) aCTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTc < 1:473937/143‑1 (MQ=255) tACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGGTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGACTCGCATCTTCCa > 1:221158/1‑143 (MQ=255) caGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTa < 2:419402/142‑1 (MQ=255) tGGTACGGATGTCCAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACTTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACgg < 1:693852/143‑1 (MQ=255) gTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACGGAt > 1:191189/1‑143 (MQ=255) cGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACGGAtttt < 1:662997/143‑1 (MQ=255) | GAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTACCACCAGCGGAATCGCATCTTCCAGCGTTTTACGGATTTT > NC_000913/2918927‑2919208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |