New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3717215 =	35 (0.860)	3 (0.080)	3/260	5.8	8.2%	intergenic (+9/‑95)	yiaD/ghrB	multicopy suppressor of bamB; outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B
	?	NC_000913	3717245 =	35 (0.940)					intergenic (+39/‑65)	yiaD/ghrB	multicopy suppressor of bamB; outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGGGCGTGGACGCCAGCCGCATCCGTACTCAGGGCCTTGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTACAAAGCCTTACCTGATGATTTACTG  >  NC_000913/3717082‑3717357                                                                                                                                      |                                                                                                                                               aGGGCGTGGACGCCAGCCGCATCCGTACTCAGGGCCTTGGCCCGGCTAACCCAATCGCCAGCAACAGCAACGCAGCATGTTGGGTTCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTg                                                                                                                                       <  1:655060/143‑1 (MQ=255)     cGTGGACGCCAGCCGCATCCGTACACAGGGCCGTGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGc                                                                                                                                   <  1:195732/143‑1 (MQ=255)      gTGGACGCCAGCCGCATCCGTACTCAGGGCCTTGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCa                                                                                                                                  <  1:119484/143‑1 (MQ=255)         gagcccAGCCGCAGCCGTACTCAGGGCCTTGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGaa                                                                                                                               <  1:423002/139‑1 (MQ=255)                 ccgtctCCGTACTCAGGGCCCTGGCACGGCTAACCCAATCGCCCGCAACAGCACCGCAGAAGGTAAGGCGCACAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTg                                                                                                                       <  2:668792/138‑1 (MQ=255)                                   ccTGGGTCCGGCTAGCCCAGTCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCACGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCt                                                                                                     <  2:259145/143‑1 (MQ=255)                                    cTTGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTACTCCCTTTCCTGCCCGGTCTCGCACCACTCCCCTTGCATTCTCCAGtcatcatt                                                                                                    >  1:261637/1‑136 (MQ=255)                                     ttGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTtc                                                                                                   <  1:399990/143‑1 (MQ=255)                                      tGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAACTCACCTGGCATTCTGCAGTTTTCCTtca                                                                                                  >  2:494274/1‑143 (MQ=255)                                        gCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTACGGCGCAAAACCACCGTGTACACAATACATTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTACAGTTTTCCCtcagc                                                                                                >  2:290851/1‑141 (MQ=255)                                           cGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCCGTCTGCAGTTTGCCTTCCTAata                                                                                             >  1:80309/1‑143 (MQ=255)                                              cTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCGGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATAttt                                                                                          <  2:374224/143‑1 (MQ=255)                                                aaCCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTGTCATGCCAGGGGATGCAGAAATCACCAGGCATTATACAGTTTTACTTCAACATCtttaa                                                                                        >  1:53887/1‑141 (MQ=255)                                                  cccAATCTCCAGCAACTTTACCGCAGAAGGTAAGGCGCAAAACCGCAGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCCGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAgg                                                                                      <  2:584955/143‑1 (MQ=255)                                                      aTCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTaa                                                                                  <  1:344254/143‑1 (MQ=255)                                                      aTCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTCGCACTCGTCAGTCTTCCGTCCTCATATTTCAGGCTaa                                                                                  >  2:295250/1‑143 (MQ=255)                                                                    cACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATCCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTGAt                                                                    >  1:690930/1‑143 (MQ=255)                                                                        ggagtaGGTGAGGCGCAAGTCCGCCGTGTAGAGCCTACCGTAAGCCCGCTGTAATCCCGTTCATGGCTGGTGATGCAGAACTCACCTGGCATTCTTCAGTTTTCCTTCATCTTATTTCAGGCTAAGGTGATCGCCTTATCAGt                                                                <  2:477442/138‑1 (MQ=255)                                                                           gAATGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGaa                                                             <  1:434954/143‑1 (MQ=255)                                                                            aaGGTAAGCGGCAAAGCCGCCGTGTAGAGATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAAt                                                            <  1:613860/143‑1 (MQ=255)                                                                               gTAAGGCGCAGAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGga                                                         <  1:705952/143‑1 (MQ=255)                                                                               gTAAGGCGCAAAACCGCCGGGGAGAAATGACCGTAAGCCCGCTGTAATCCCTTGCATGCCAGGTGATGCAGGAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGga                                                         <  1:639815/143‑1 (MQ=255)                                                                                 aaGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGgaga                                                       <  2:35219/143‑1 (MQ=255)                                                                                         aaaCCGCCGTGTAGAAATTACCTTGAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCCGAAATCACCTGGCATTCTTCAGTTGTCCTTCATCATATTGCAGGCTAAGGTGATCGCCTTATCAGTGAATGGACAGAAGCATg                                               <  2:359918/143‑1 (MQ=255)                                                                                             cgccgTGTAGAAAGTACCTGAAGCCCGCTGTAATCCTTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGc                                           <  2:190960/143‑1 (MQ=255)                                                                                              gccgTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTCACGTGATCGCCTTCTCAGTGAATGGAGGGCAGCATgccgcc                                          >  1:329949/1‑138 (MQ=255)                                                                                                 gtgtAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGccgtc                                       <  2:647832/143‑1 (MQ=255)                                                                                                    tAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGccgtccgt                                    <  1:11831/143‑1 (MQ=255)                                                                                                          ttACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCGGTTAGCct                              >  1:578573/1‑143 (MQ=255)                                                                                                             ccTTTAGCCCTCTGTAATCCCTTGCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCGTCATCTTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTa                           <  2:10087/143‑1 (MQ=255)                                                                                                              cTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGACTGGAGAGCAGCATGAAGCCGTCCGTTATCCTCTAc                          >  2:627397/1‑143 (MQ=255)                                                                                                                     cccctttAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTCAGGTGATCGCCTTATCAGTGAATGGATAGAAGCATGAAGCCGTCCGTTATCCTCTACAAAGCCt                   <  1:65963/137‑1 (MQ=255)                                                                                                                              tCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGAGCGCCTTATCAGTGACCGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTACAAAGCCTTACCtgatg          >  1:199174/1‑143 (MQ=255)                                                                                                                                  tttCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTACAAAGACTTAACTGAGGGttt      >  1:503186/1‑143 (MQ=255)                                                                                                                                   tgcATGCCCGGTGATGCAGAAAGCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTACGATGATCTCCTTATCAGTGAATGGAGAGACGCATGAAGCCGTCCGTTATCCTCTACAAAGCCTTACCTGATGATTTa     <  2:48596/141‑1 (MQ=255)                                                                                                                                      aTGCCACGTCATGCAGCAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGACAGAAGCATGAAGCCGTCCGTTATCCTCTACAACGCCTTACCTGATGATTTACTg  <  2:549391/143‑1 (MQ=255)                                                                                                                                      |                                                                                                                                               AGGGCGTGGACGCCAGCCGCATCCGTACTCAGGGCCTTGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTACAAAGCCTTACCTGATGATTTACTG  >  NC_000913/3717082‑3717357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.