Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)39 (1.450) 27/284 0.1 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)36 (1.340) 25/284 0.1 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

AAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATT  >  NC_000913/1979347‑1979631
                                                                                                                                              |                                                                                                                                              
ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                <  1:384470‑M1/4‑1 (MQ=255)
aaaaGGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTaa                                                                                                                                                <  1:324428/143‑1 (MQ=255)
  ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgaggcagccgagaagaatttccctgcttgttcgcaccttccCTCAtt                                                                                                                                              <  1:16966‑M1/6‑1 (MQ=255)
    aacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaa                                                                                                                                            >  1:433261‑M1/136‑143 (MQ=255)
     gAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaag                                                                                                                                           <  1:485054‑M1/143‑6 (MQ=255)
     acgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                           >  2:437662‑M1/135‑143 (MQ=255)
       aaCAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggt                                                                                                                                         <  2:149106‑M1/143‑8 (MQ=255)
         cttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttctCTAATTAAATACa                                                                                                                                       <  1:301644‑M1/13‑1 (MQ=255)
         catgaatAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgc                                                                                                                                       <  1:128379‑M1/140‑10 (MQ=255)
          ttaaatggcgaagagaaggactagagaggtggattcaaggcatttacgggacaaaaaatcggctcaaacatgaagaactgaaattactgagtcagccgagaagaatttccccgcttattagcacctttcCTAATTAAATACaa                                                                                                                                      >  2:296003‑M1/130‑143 (MQ=255)
          ttaaaaggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaa                                                                                                                                      >  1:228282‑M1/130‑143 (MQ=255)
            aaatgtcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaag                                                                                                                                    >  1:370883‑M1/128‑143 (MQ=255)
            aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaatatcggctcaaacatgaagaactgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaag                                                                                                                                    >  2:280225‑M1/128‑143 (MQ=255)
            aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaag                                                                                                                                    <  1:109276‑M1/16‑1 (MQ=255)
                  tCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAACCAGACACTGACCGCACAACAAACTAAggaaggtgcgaacaagtc                                                                                                                              >  1:227199‑M1/1‑125 (MQ=255)
                  cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAATGAAAGGc                                                                                                                              <  2:274972‑M1/22‑1 (MQ=255)
                   gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGca                                                                                                                             <  2:436862‑M1/23‑1 (MQ=255)
                    gAAATGGGCGGCTGCGCACAGTCAAAATAACCCACCGTACACAACCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccc                                                                                                                            <  1:469116‑M1/143‑21 (MQ=255)
                         gggATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaaggccctgata                                                                                                                       >  1:132131‑M1/1‑118 (MQ=255)
                            gtctaaataggctgattcaaggcatttacgggagaaaagatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAAc                                                                                                                    <  1:397212‑M1/32‑1 (MQ=255)
                               ttGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagat                                                                                                                 <  2:457006‑M1/143‑32 (MQ=255)
                                tGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATACATAATCACTTTCATTCAATACCAGATAAGCTATTTTTAAACAGCCACTTACCGCACAACCAACTCAggaaggtacgcacacgtccctgatatgagctc                                                                                                                >  1:179095‑M1/1‑111 (MQ=255)
                                 aataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaat                                                                                                               <  1:38965‑M1/37‑1 (MQ=255)
                                      caGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                          <  2:357155‑M1/143‑39 (MQ=255)
                                       cgtatctaacgcgttaacggcggaaaaattcggctcaaaaaagaacaaatgaaatgactgagtcagccgagaagaagttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                         >  2:144481‑M1/101‑143 (MQ=255)
                                        gTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgt                                                                                                        >  2:331496‑M1/1‑103 (MQ=255)
                                           aaaaTAACTCACCGTAAATAATCATGTGTTAGAAACAAACACTATCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat                                                                                                     >  2:149677‑M1/1‑100 (MQ=255)
                                                 gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtttt                                                                                               <  2:373410‑M1/53‑1 (MQ=255)
                                                 gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtttt                                                                                               <  1:1074‑M1/53‑1 (MQ=255)
                                                   tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGCCACTTACCGCACAACAAACTAAggaaggtgcgaacaggtccctgatatgagatcatgtttgtgatctggagcc                                                                                             >  1:146443‑M1/1‑92 (MQ=255)
                                                   tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc                                                                                             <  2:94382‑M1/143‑52 (MQ=255)
                                                   tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc                                                                                             >  1:347805‑M1/1‑92 (MQ=255)
                                                     ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACat                                                                                           <  1:162904‑M1/57‑1 (MQ=255)
                                                        gTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataga                                                                                        <  1:93816‑M1/143‑57 (MQ=255)
                                                         gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATAAAATGTTTTACatatat                                                                                       <  2:25313‑M1/61‑1 (MQ=255)
                                                         gggagaaaaaatcggctcaaacatgaaaaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACACTCAACTTAATCTTAATGAACTGATTTCCatatat                                                                                       <  2:305116‑M1/61‑1 (MQ=255)
                                                           gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTa                                                                                     <  1:187556‑M1/63‑1 (MQ=255)
                                                             gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                                   <  1:30122‑M1/65‑1 (MQ=255)
                                                             gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATAAAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAAATGTATTAAc                                                                                   <  2:233228‑M1/65‑1 (MQ=255)
                                                              aatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                  <  2:328904‑M1/143‑63 (MQ=255)
                                                                aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                                <  1:295780‑M1/68‑1 (MQ=255)
                                                                           aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGc                                                                     <  1:389911‑M1/79‑1 (MQ=255)
                                                                              catgaataaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAGCAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGga                                                                  >  2:240956‑M1/62‑143 (MQ=255)
                                                                                atCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa                                                                <  1:331496‑M1/143‑81 (MQ=255)
                                                                                     aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAg                                                           >  2:109276‑M1/55‑143 (MQ=255)
                                                                                      aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGt                                                          >  1:372422‑M1/54‑143 (MQ=255)
                                                                                         aTGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc                                                       >  2:125253‑M1/1‑54 (MQ=255)
                                                                                                 tgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGACAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTACTGCGGAGGATCTGTacactaggttc                                               <  2:74694‑M1/101‑6 (MQ=255)
                                                                                                            aTTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                    <  1:255456‑M1/143‑109 (MQ=255)
                                                                                                             gaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACAt                                   <  2:447438‑M1/113‑1 (MQ=255)
                                                                                                              aagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACAtt                                  <  1:27610‑M1/114‑1 (MQ=255)
                                                                                                                   tttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGaaa                             <  1:346285‑M1/119‑1 (MQ=255)
                                                                                                                   tatccacgattatgcgcacctaccCTAACTAAAGACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGaaa                             >  1:9532‑M1/25‑143 (MQ=255)
                                                                                                                       gACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                         <  1:125253‑M1/143‑120 (MQ=255)
                                                                                                                       gACACTTACCGAACAACAACCTAAggaagttgcgaacaagtccctgctatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                         <  2:8381‑M1/143‑120 (MQ=255)
                                                                                                                           cttattcgcaccttccCTAAGTAACTACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGa                     >  1:370198‑M1/17‑143 (MQ=255)
                                                                                                                            ttACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac                    >  1:342566‑M1/1‑19 (MQ=255)
                                                                                                                                cGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacatggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccaga                >  1:253526‑M1/1‑15 (MQ=255)
                                                                                                                                 gcgcagcaaacgaaggaaggcgcgaacaagtccctgatatgagatcatggttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaa               <  1:83360‑M1/137‑130 (MQ=255)
                                                                                                                                   acaacaAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa             <  1:372761‑M1/143‑132 (MQ=255)
                                                                                                                                    accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGa            >  2:187556‑M1/8‑143 (MQ=255)
                                                                                                                                     aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccggcagaccagaaaaga           <  2:347805‑M1/143‑134 (MQ=255)
                                                                                                                                     aacaaACGAAggaagctgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtccatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga           <  1:261833‑M1/143‑134 (MQ=255)
                                                                                                                                        aaaCGAAggaaggtgcgaacaagtgcctgatatgagatcatgtatggcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagat        <  1:294187‑M1/143‑137 (MQ=255)
                                                                                                                                           cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt     >  1:345132‑M1/1‑4 (MQ=255)
                                                                                                                                            tAAggaaggtgcgaacaagtccctgatatgatatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    <  2:63358‑M1/143‑141 (MQ=255)
                                                                                                                                            tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacccgaaaagagattttc    >  2:41933‑M1/1‑3 (MQ=255)
                                                                                                                                            tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    <  1:361296‑M1/143‑141 (MQ=255)
                                                                                                                                            tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgacgtcagaccagaaaagagatctac    >  2:32779‑M1/1‑3 (MQ=255)
                                                                                                                                            gaaggcaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    <  1:356618‑M1/142‑141 (MQ=255)
                                                                                                                                             aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttct   <  1:260913‑M1/143‑142 (MQ=255)
                                                                                                                                              aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt  >  2:47443‑M1/1‑1 (MQ=255)
                                                                                                                                              aTTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTgattgatt  <  1:150328/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
AAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATT  >  NC_000913/1979347‑1979631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.