| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 96.8% | 184.0 / ‑3.6 | 60 | intergenic (‑2/+1) | glpR/glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (37/20); total (39/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
ATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑C‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCC > NC_000913/3560218‑3560673 | aTCAAGGTGTTAGCACGGTTGATATTGTTGGTGACAATGCGCAATTTGCTGTGATGGAGCATTGCGTGCGCTACCGCTTCGGGCGTGGTGCCGATATCGATAACCGGCGTCGAGCCATTGGGGATTTGCCCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGcg < 1:716550/239‑2 (MQ=255) cAACGTGTTCGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGCTATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGGCTGGTTGGCCTTGCGATCGTGCCACAGCGCGTTAACGGAAATTGAAGGAGGCGCACCACCGCCATGATGGcgca > 2:10067/1‑236 (MQ=255) aGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCAACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGAGTTAACCGACCTGCAAGGCAGCTCCGCCCCGCCTTGTTGGc‑ccaggacaaggt > 1:617561/1‑228 (MQ=255) ttGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GAATCAGGTTTTGCt > 1:1179583/1‑238 (MQ=255) ttgGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTc > 1:17469/1‑239 (MQ=255) ttgGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGGTTTGCTCCGCCAGCTc > 1:1218866/1‑239 (MQ=255) tGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTcg > 1:288508/1‑239 (MQ=255) cTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGGTAAACAGCGTCGAGCCATTGGTGATTTGCTCCGCCCCTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAATGCAGCGCGGCACCCCCTTAATGGC‑CAA‑GGATCAGGGTTTTCTCCCCCAGCCACATGAGGCCGGGGCGacaatt > 2:475927/1‑234 (MQ=255) tgATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGACCAGGGTTTGCTCCGCCAGCTCATTGAGGGCGCCGAGAAAAGtggg > 2:823013/1‑236 (MQ=255) gAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGCCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGCTTTGCTCCGCCAGGCCATTGAGGTCCCGGCGAATAGCCTGCggcc > 1:698382/1‑237 (MQ=255) aGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGcg > 1:382664/1‑238 (MQ=255) gcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCCTCATGGCGC‑C‑GGAACCGGTTTTTCTCCCCCAGCCCCTTGAGGGCCCGGCGAAAAGTCTGCGGGGCGACggg > 2:9611/1‑238 (MQ=255) cgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCCTTACGGTCGCGGCGAATAGTCTGCGGGCTGACGgag > 1:692735/1‑239 (MQ=255) tACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTAGAGCCGTTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTATTTTTCTTCGGTCTGGGCGGCCTTGCGATCGTGCCACGCCGGGTTGACCGCACTGGCAGGCCGCGTCACACCGCCATCATGGCGT‑A‑GCATCCAGTTTTGATCGCCTCGCCCATTGAGGTCCGCGCAAACAGTCTGCCGGGCGACgggggaacat > 2:1204010/1‑230 (MQ=255) aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGCTGGCGC‑A‑GGATCAGGTGTTGCTCCACCAGCACATCGAGGTCGAACAGAACAGCATGCGGCCTCACGGAaaaagggcc > 2:289514/1‑234 (MQ=255) aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCTCCAGCTCATTGAGGTCGCGGCGAAAAGGCTGCGGGCGGAGGGAGAAATGct > 2:178175/1‑238 (MQ=255) aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCAGCGAACAGGCTGCGGGATGCCGGGGAAATGcg > 2:929405/1‑237 (MQ=255) tCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCa > 1:601369/1‑238 (MQ=255) ccGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGCCGGAGAAATGCTCTACCAg > 1:154260/1‑238 (MQ=255) cccattatCGATAAACAGCGTCGAGCCTTGGGGGATTGGCCCCGCCACTTGGCGGGCGATGCGCTCTTTTTCTCCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTa < 1:178175/233‑1 (MQ=255) atatCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACGGAc > 1:402131/1‑239 (MQ=255) gATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCCCTACCAGCCCTTCGGTACTGCCATaa > 1:538673/1‑238 (MQ=255) actgCGTCGTGCCATTCGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGAAAGCGCCTCACCGCCATGAGGGC‑G‑ACGGATCAGGTTTTGCTCCGCCGGCTCATTGGGGTCGCGGCGAAGAGTCCGCGGGCTGCACGCGAAAGTGTCTACACGGGCTTCGGTACGAACATaaaacagc > 2:212398/4‑233 (MQ=255) cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGtt > 1:512369/1‑239 (MQ=255) cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCGGtt > 1:372480/1‑239 (MQ=255) tCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCTAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAACAGTCTGCGGGCGTACGGGGAAATGCTCTCCCCGCCCTTGGGCACTGACATAACCCGCCCGTTTa > 2:929590/1‑239 (MQ=255) tCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAAAGGGCTCGGGGCTTGCGGGGGAATCCTACACCAGCCTTTCGGGGCTGCCACACCCCTGCTGTTTa > 2:886258/1‑239 (MQ=255) cGAGCCTTTGGGGTTTGCCCCCGCCACTTTGCGGGCGATGCGCTTTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCAGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTa < 1:823013/238‑1 (MQ=255) atttGGGGTTTTGCCCCGCCACTTGGCGGGCGATGCGCTCTTTTTCTGCGGTCTGGGTGGCTTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGt < 1:262897/237‑1 (MQ=255) ttgggtttttttCTCCTCCCCTTTGGGGGCTGTGGCCTTTTTTTCTTGTGGCGGGGTGGCCTGGCACTCGTGCCAGGGGGTTTTAACCAAAGTGGAGGGCAGCCCCGCACCGCCATGATGGCGT‑A‑GGATGAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt < 2:538140/231‑1 (MQ=255) gttGGGGTTTTCCCCCGCCATTTGGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCAGGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt < 1:759847/238‑1 (MQ=255) ttGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGACGGCCGCGCCGCACCGCCATGTTGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGTTCGCGGCGAATAGCGTGCGGGCTGACGGAGAAATGCTTTAACAGCCCTTCGGTACTGCCTTAACCCCGCGGtttcgccatcac > 2:262897/1‑230 (MQ=255) ttGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTACCAGCTCTTCGGAACTGACATAACCCTGCTGTTTAACAAGTTc > 1:538140/1‑239 (MQ=255) ttGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGCCATAACCCTGCTGTTTAACCAGTTc > 1:1293575/1‑239 (MQ=255) aTTTGCCCCGCCACTTTGCGGGCGATGCGCTTTTTTCCTTCGGTCTGGGTGGCTTTGCGATCGTGCCACGGCGGGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGataa < 1:1139600/238‑1 (MQ=255) tttGCCCCGCCCTTTTGCGGGCGATGCGCTTTTTTTCTGCGGTCTGGGTGGCTTTGCGATCGTGCCACGGCGTGTTAACCGAACGGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGataata < 1:164521/239‑1 (MQ=255) gccccGCCCTTTTGGGGGCGATGCGCTCTTTTTCCTCGGTCTGGGTGGCCTTGCGATCGGGCCCCGGGGTGTTACCCGAACGGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCg < 1:252667/236‑1 (MQ=255) gCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGCAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGACGCGGCGACTAGTCTGCGGGCTGACGGCGAAATGCTCTACCAACTATTCGGTACTGACATAAACCTTCTGTTTAACCAGTTAGATAATAACg > 2:244871/1‑239 (MQ=255) cTCCGCCACTTTGCGGGCCAGGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTGTCTCAGCCAGCTCATTGAGGGCGCAGAGAAAAGTCTCCGGGGGGACGGAGAAATGCTCAACCTGTCCGTAGGTATTAACTAAACCCTGCTGTTTAAAAAGTTTAATAAAACCGt > 2:263506/1‑239 (MQ=255) cccccTTTGGGGGGGATGCGCTTTTTTTTTTGGGTTGGGGTGGCCTTGGGATCGGGCCAGGGGGTTTTAACCGAACTGGAAGGCAGGGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTtgtg < 1:9611/235‑1 (MQ=255) ttGCGCTTTTTTGCTCGGGTTGGGGGGGCCTTGCGATCGTGCCACGGGGTGTTAACCGAACGGGAAGGCGGCGCGGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGtgtttgtt < 1:475927/237‑1 (MQ=255) tGCGGTCTTTTTCTCGGGTCGGGTTGCCCTGGCGATCGTGCCACGGGGTGTCAACCGACTGGGAAGGCAGCGCCGGACCGGCATGATGGCTC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTc < 1:273168/239‑1 (MQ=255) gcgcTTTTTTTCTGCGGTCTGGGTGGCATGGCGATCGGGCAACGGCGTTTTAACCAACCTGGAATGAAGCGCGCCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCAGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCa < 1:1137506/239‑1 (MQ=255) ttttCTTGGGCTGGGGTGGCCTTGGGTGCGGGCCCGGGTGTGTTAACCGAACTGGAGGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATaa < 1:886258/239‑1 (MQ=255) tgcggtggtggTGGCCTGGCGCTCGGCGCTGGGCGTGTTGACCGCACCGGAAGGCGCCGCGGCACCGCCATGATGGCGC‑A‑GGAGCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATccc < 2:17469/230‑1 (MQ=255) gTCTGGGTGGCTTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAc < 1:328899/185‑1 (MQ=255) gTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGa > 1:299153/1‑239 (MQ=255) ccTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGTTGACGGAGAAATGCTCTACCAGCCCTTCGGTCCGGACATAACCCTGCTGGTTAACCAGTTCAata > 2:328899/1‑185 (MQ=255) ccTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTACCCGCTCTTCGGGCCTGACTAAACCCTGCGGTTTCACCAGTTCGATAATCCCTTTTTGC‑CTCTGtgtttgt > 2:140054/1‑209 (MQ=255) tGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAATAGTCTGCGGGCTGACGGCGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATACAACCGTTTGGG‑CGTTGTGTTTGTTTCATTTTTAAATCACCGGAATTTtttttgttt > 2:1262506/1‑239 (MQ=255) cGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGGGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgttttc > 1:903620/1‑239 (MQ=255) gTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCCTTTTTAAATCCCTGGAATTATTTTCGTTTTCGCGCa > 1:888663/1‑239 (MQ=255) aCGGCGTTTTACCCGAACGGGAAGGGCGCGCTGGACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAg < 1:1111124/239‑1 (MQ=255) gtggtaaaCCGAACGGGAAGGCAGGCCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGa < 1:929590/232‑1 (MQ=255) tgtaacccGAACGGGAAGGCAGCCCGGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt < 1:805159/232‑1 (MQ=255) tgtTAACCGAACTGGAAGGCAGCGACGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGAGGCGAACAGTATGCGGGCGGCCGGAGAAATCAACTACCAGCTATTCGGGACTGACTGAACCATGCTGTTTAACCACTTCGATAAAACC‑TTTTGACCATTGCGTTGGTGTCATTTTTAAAACCATGGACTAATTTTAGTTTTCCCGCAtgaagtgatta > 2:131492/1‑229 (MQ=255) gtttAACCGAACTGGAAGGCAGCGCCCGCCCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt < 1:156276/236‑1 (MQ=255) acgggAAGGCACGCCCCCTCCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGcc < 1:405315/236‑1 (MQ=255) aCTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGc > 1:302410/1‑224 (MQ=255) aCTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGcc > 1:1186387/1‑239 (MQ=255) cgccgcACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGCCATAACCCTGCTGTTTAACCAGTTCGATAATACCGATGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGTGCGAATCAACAAAATCCATCGCTAAAcac > 1:299936/1‑237 (MQ=255) cgccgcACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAAt > 1:149337/1‑179 (MQ=255) cgccgcACCGCCATGATGGCGC‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAAt < 2:149337/179‑1 (MQ=255) | ATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑C‑A‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCC > NC_000913/3560218‑3560673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |