New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	279163 =	NA (NA)	57 (0.650)	4/432	NT	50.0%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 2760086	57 (0.650)					coding (1102/1410 nt)	yfjI	CP4‑57 prophage; uncharacterized protein

GGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/279397‑279163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCGATCCAATGTCTTTCTGCTTCTGCAGAGAATCGGAGGCAGATGCGATTATTTTCATTAATTTTA  <  NC_000913/2760086‑2759872                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gtgttacggcgTGACGGAGGGTTGGCCGCCTTATGAATTCCGCCTTAAGGGAAAGCTTCACGTAATCAGCAAGCGATATCAGCCGCGAATGGAGCGGCATAACCGTAATCTGAGGCAGCTCCTGGCACGGCTGGGACGGACGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGCCAAAGT‑CATCGGGCATTATCTGAACATAAAACGCTATCAATAA‑GTTGGAGTCATTCCCCGGT                                                                                                                                                                                                                     <  2:1139915/228‑1 gtgtATATGGATGACGTATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCGTAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGT                                                                                                                                                                                                                     <  2:574172/235‑1 gggtATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGT                                                                                                                                                                                                                     <  1:1135343/235‑1   TGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTTAGGCAGAACCTGGCACGGCTGGGACGGAAGGCGCTTTCGTACTCAAAACCGGGGGATCAACATGGCCAAGT‑CAAGGGGCATTTACTGAACATAAAAAACTATAAAAAATGTTGAAG‑CATTACCCGGcca                                                                                                                                                                                                                   >  2:1006445/1‑236                                         CGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGT                                                                                                                                                                             <  1:1231098/239‑1                                          GCCTGAAGGGAAAGCTGCCAGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAA                                                                                                                                                                                                                   <  2:871343/200‑1                                          GCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTA                                                                                                                                                                            >  1:192738/1‑239                                          GCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTA                                                                                                                                                                            >  1:1275377/1‑239                                          GCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAA                                                                                                                                                                                                                   >  1:871343/1‑200                                           ccgGAAGGGAAAGCTGCACGTAAGCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAA                                                                                                                                                                           <  1:42115/236‑1                                           CCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAA                                                                                                                                                                           <  1:1128316/239‑1                                                     AAGCTGCAAGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAG                                                                                                                                                                  <  1:202292/238‑1                                                           CACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAATTCGCTGTCGTTCTCAACATCGGTGGAGCGGCATGCCAAAGT‑CATCGGGCATTATCTGAACATAAAAACCTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCCCCTCCATCACCCCTGAAAGATTTAAGAAAGGACGCAAGACCCGCC                                                                                                                                                           >  2:1019019/1‑239                                                           CACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGAGGAGCAGCCTGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTAACCGGTAACAGATATATCACCTCCATCACCGCTAAAGTAATGAAGAAAGGCAGCAAACCCCGCC                                                                                                                                                           >  2:454726/1‑239                                                                  TCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTC                                                                                                                                                     >  1:475374/1‑238                                                                  TCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCAAGTTC                                                                                                                                                     >  1:34601/1‑238                                                                              tTACGCAGCGAATTGGACGGCATAACCTGAATCTGAGGCAGCCCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAG                                                                                                                                        <  1:405994/238‑1                                                                                    AGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAAAATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGGAACAGATATATCGCCCCCATACCCGCTGAAGGAATTAAGTAAGGCAGAAAGCCCCCCCATATTCTTCGCCATTTTAAAAGaaa                                                                                                                                  >  2:1031912/1‑236                                                                                      CGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAATATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGAAAGGCAGAAAGACCCGCCAAGTTCTCCCCCATTTTAAAAGaaaaa                                                                                                                                >  2:627488/1‑234                                                                                      CGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATA                                                                                                                                 <  1:353405/238‑1                                                                                      CGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGAAATGAAGTAAGGCAGCAAGCCTGGCCATGTTATCCGCCATTTTAGAAGCATAA                                                                                                                                >  1:349073/1‑239                                                                                       GAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATA                                                                                                                                 <  1:753092/237‑1                                                                                       GAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCCCCTTCACACCTGCAGAAATGAAGTAAGGCAGCAAGCCCCCCCCTGTTTTCCGACATTTAAGAAGgaaaa                                                                                                                                >  2:753092/1‑233                                                                                            ggtgGGCATACCCTGAATTTTAGGCAGTCCTTGGCCAGGCTGGGACGGAAGTCTCTGTTGTTCTCAAAATCTGTGGAGCAGAATGACAAAGG‑CATCGGGCATTATCTGAACATAAAACACTATCAGTAA‑GTTGGAGTCATTACCCGGGAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTA                                                                                                                          <  2:257371/235‑1                                                                                            GAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTA                                                                                                                          <  1:1248136/239‑1                                                                                                  CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCA                                                                                                                    >  1:1183875/1‑239                                                                                                  CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCA                                                                                                                    >  1:76109/1‑239                                                                                                       CCTGAATCTGAGGCAGCCCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATA                                                                                                                                 <  1:411688/221‑1                                                                                                       CCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTAGCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATA                                                                                                                                                                                                           <  1:1062720/147‑1                                                                                                        ccGAATCTGGGGCAGCACATGGCACGGCTGGGACGGAAGTCGATGTGCTTCTCAAAATCGGTGGAGCAGCATTAAAAAGT‑CATCGGCCATTATCTGAACATAAAACCCTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGA                                                                                                              <  2:691540/237‑1                                                                                                           AATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCAACGCTGAAGGAATGCAGTAAGGCAGCAAACCTCCCCATGTCCTCCGCCCTTTTAAAAGCATAAACCTTAAAATCATAAAGAAG                                                                                                            >  2:884271/1‑238                                                                                                                 AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATTAAGTAAGGCAGCAAGCCTCGCC                                                                                                                                                           >  2:290207/1‑185                                                                                                                 AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCC                                                                                                                                                           <  1:290207/185‑1                                                                                                                 AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGACAGCCTCGCCCTGTTCTCCGCCATTTTAGAAGCACAATCCTTAAAATAATAAAAAAGGCCAAac                                                                                                     >  2:1072772/1‑237                                                                                                                 AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAAGCAGCAAGCCTCGCCATGTTCTCCGCCCTTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAAcc                                                                                                     >  1:604400/1‑237                                                                                                                 AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGCCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATC                                                                                                     >  1:98060/1‑239                                                                                                                 AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GCTGGAGGCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGCAGTAATGAAGTAAGGCAGCAAGCCTCGCCCTTTTCTCCGCCATTTTAGAAGCAAAATCCTTAAAATCACAAAGAAaccaaata                                                                                                     >  2:1079674/1‑231                                                                                                                       CACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCTTTACCCGGTAACAGATATATCGCCTCCATCAC                                                                                                                                                                                              <  1:162008/144‑1                                                                                                                           TGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTT                                                                                           <  1:148704/239‑1                                                                                                                                CGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGA                                                                                       <  1:1072772/238‑1                                                                                                                                  GCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTC                                                                                    >  1:656680/1‑239                                                                                                                                   CTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCG                                                                                   >  1:108061/1‑239                                                                                                                                      GGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCac                                                                                  >  1:396179/1‑235                                                                                                                                       GACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCAAAATCCTTAAAATCCAAAAGAAGGCCAATCATTCCCATTTTTGACccaacac                                                                               >  2:590819/1‑232                                                                                                                                            AAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATAACGTAAGGCAGCAAGCCTCGCCCTGTTCTCCGCCATTTTCGAAGCATAATCCTTAAAATCATAAAGAAGGCACATCATTCTCATTTCTGACAAGACCAGGTTG                                                                          >  2:1249262/1‑239                                                                                                                                             AGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGT                                                                         >  1:1140129/1‑239                                                                                                                                                    gtctttccaAAATTCGGTGGACAAGCATGA‑AAAGTGTACCGTGCATTATCTGAACATAAAACCCTTTCAATAA‑GTGGGAGTCATTACCCAGTAACAGATATAGCGCCTCCATCACCTCGGAAGTAATGAAGTAAAGCAGCAAGCCTAGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTC                                                                  <  2:604400/230‑1                                                                                                                                                      ggttttaAAAATCGGTGGACAAGCATAAAAGAGT‑CTGCGGGCATTATCTGAACATAAAACACTAGCAATAA‑GTTGGAGGCATTACCGGGTAACAGTTATATCGCCTCAATCACCGCGGAAGTAATGAAGTAAGGCAGCAAGCATCGCCATGTTCTCTGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCG                                                                 <  2:275366/231‑1                                                                                                                                                                 TCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCGATCCAATGTCTT                                                     <  1:1019019/239‑1                                                                                                                                                                   GGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCGATCCAATGTCTTTC                                                   <  1:590819/239‑1                                                                                                                                                                               tgtaAAAGT‑CACCGGGCATTATCTGAACAAAAAACACTATCAATAA‑GGTGGAGTCATTACCCGGTAACAGATATATCGCCTCAATCACCGCTGAAGTAATGAATTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCGATCCAATGTCTTTCTGCTTCTGCAGA                                       <  2:1183875/235‑1                                                                                                                                                                               aaaaaagGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCGATCCAATGTCTTTCTGCTTCTGCAGA                                       <  1:775020/232‑1                                                                                                                                                                                  CAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCGATCAAATGTCTTTCTGCTCCTGCAGAGAA                                    >  1:384812/1‑239                                                                                                                                                                                   AAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCAGGTAACAGATATATCGCCTCCATCACCGCTGAAGAAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAACAACGGCCAGTCATTCTCGATTCTCACCACACCTGGTTGTAGAATTAGATCCAATACCCTTCTGCTTCTGCACAGAcg                                   >  2:564936/1‑237                                                                                                                                                                                               gtattttataAACAAAAAACCCTATAAAGAA‑GTGGGAGTCATTACCCGGTAACAGAAATACCGCCCCAATCGCCGCTAAATTAATGAAGTAAGGAAGCAAGCCTAGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCGATCCAATGTCTTTCTGCTTCTGCAGAGAATCGGAG                              <  2:1191956/223‑1                                                                                                                                                                                                  TTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCCATCATTCTCATTTCTGACTCGACCTGGTTTTAGAATTCGATCCAATTTCTTTTTGCTTCTTCAGAGAATCGGAGGCctggt                       >  2:775020/1‑232                                                                                                                                                                                                  TTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGC                                                                                                                                                                                           <  1:1070515/73‑1                                                                                                                                                                                                  TTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGC                                                                                                                                                                                           >  2:1070515/1‑73                                                                                                                                                                                                         AACATAAAACCCTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAA                                                                                                       <  2:697181/150‑1                                                                                                                                                                                                         AACATAAAACACTATCAATAA‑GTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAA                                                                                                       >  1:697181/1‑150                                                                                                                                                                                                                     TATCAATAA‑GTTGGAGTCATTAACCGGTAACAGATATATCGCCTCCATCACCGATGAAGTAATGGAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAGGCATAATCCTTAAACTCATAAACAAGGCCAATCATTCTCATTTCTATCTCAACCTGGTTGAAGAATTCGATCAAATTTCTTTCTGCTTCTGCAGAGAATCGGAGGCAGATGTGATAATTTTCAcacaaggcc  >  2:224543/1‑230                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGT‑CATCGGGCATTATCTGAACATAAAACACTATCAATAA‑GTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/279397‑279163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCGATCCAATGTCTTTCTGCTTCTGCAGAGAATCGGAGGCAGATGCGATTATTTTCATTAATTTTA  <  NC_000913/2760086‑2759872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.