| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,619,080 | Δ35 bp | intergenic (‑172/‑6) | marC ← / → marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1619080 | 1619114 | 35 | 49 [0] | [1] 50 | marC/marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1619079 | 0 (0.000) | 46 (1.250) | 43/272 | 0.0 | 98.9% | intergenic (‑171/‑41) | marC/marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
| ? | NC_000913 | 1619115 = | 1 (0.030) | intergenic (‑207/‑5) | marC/marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance | |||||
GGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1618934‑1619079‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGT > NC_000913/1619115‑1619253 GGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGG > 2:379385/1‑143 CGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGCGCAACTAATG > 2:632523/1‑143 GAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAATCTTGAACCGATTTAGCAAAACATAGCAACAGACAATTCATTAATTTGACTTATACTTGCCTGGGCAACTAATGT > 1:20732/1‑143 GAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGT < 2:716689/143‑1 AAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTCCCTGGGCAACTAATGTG > 2:30011/1‑143 GTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAA < 1:374332/143‑1 ATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCACTTCATTCATTTGACTTTTACTTGCCTGGGCAACTAATGTGAAAAGT > 1:43697/1‑143 TAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTA > 2:140874/1‑143 GGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCCTTTGACTTATACTTGCCTGGCCAACACATGTGCAAAGTACaaa > 1:114271/1‑140 ACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCT < 2:256702/143‑1 GATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCA > 2:419794/1‑143 TAATGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGAGATAGCAAAACGTGGCATCGGGCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAAT < 1:84585/143‑1 AAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGCTTTCGCAAAACGTCGCATCGTTCAATTCATTCATTTGACTTATACATACCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATG > 1:147488/1‑143 tGTGTCTCTCTTTAGTTAGCCTTGCATCGCATTGAATAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATGCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAA < 1:240399/142‑1 GTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTTAACCGATTTAGCAAAACGTGGCATCGGTTAATTCATTCATTTGACTTATACTTTCTTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAA < 2:634659/143‑1 ACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTACTGTGAAATGTACCAGCGATCTGTTCAATGAAATTATT > 1:144589/1‑143 CTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTC < 2:588057/143‑1 CTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACGGATTTAGGAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGACTGGGCAACGAATGTGAAAAATACCAGCGATCTGTTCAATAAGATTATTACA > 2:494653/1‑143 TTGCATCGCATTGAACAAAACTTGAAACGATTTAGCAAAACGTAGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCCATGAAATAATCCCATTGGGTCcccta > 2:121233/1‑138 TCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAGCAGTACCAGCGATCTGTTCAATAAAATTATTCAATTGGATCACTTAATACA > 1:209000/1‑143 GCATTGAAACAACCTTTAACCGTTTGAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATA < 2:144589/143‑1 ATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGACTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATG < 1:392644/143‑1 AACAATACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTA < 2:409200/143‑1 CAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTTAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAAT < 1:278720/143‑1 AAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCA < 1:504042/143‑1 CTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAA < 2:52120/143‑1 TTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATAAGAAG > 1:313618/1‑143 GAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGACAAGTACCAGCGATCTGTTCAATGACATTATTACATTGGATCGAGTAATCCATATGGTTAATCAGAAGAA > 1:563863/1‑143 tATTTGGCAAATCGTGGCTTGGGTCATTTCCTTCTTTTGACTTATAATGGGCTGGGCAACTAATGTGAAAAGTACCAGCGATCTTTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATC < 1:601611/142‑1 ATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATA < 2:257879/121‑1 ATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATA > 1:257879/1‑121 AGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTG < 1:140874/143‑1 CATCGGTCAATTCATTCATTTGTCTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTAT < 1:423011/143‑1 ATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCCGCGATCTGTTCACTGAAATTATTCAATAGGGTCGCTTAATCAAAATGATTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATC > 1:4207/1‑143 TCGGTCAATTCATTAATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCT < 2:259973/143‑1 CGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGATAGATCGCCTGCTAAACGAaaaaaga > 1:218913/1‑136 TCATTCATTTGACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGTAGCAAGATCGCCTGGTTCACGAGTATCTGTCTCgtct > 1:701560/1‑139 cTTCACTTGACTTATACTGCCCTGGTCAACTCATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTATTCCATATGGTTAATCAGAAGAAATATCGCCTGCTTAACGAGTATCTGTCTCCGCTGG < 2:168353/142‑1 TGAGTTATACTTGCCTGGTCAACTAATGTGAAAAGTACGAGCGGTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTAC < 1:501646/143‑1 GACTTATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCAGCTGGATATTACC > 1:464559/1‑143 TTATACTTGCCTGAGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATACCATTGGGTCGCTTAATCCATATAGTTAATCAGAAGAAAGATCGCCTGATTAACGAGTATCTATCTCATCTAGATATTACaccc > 2:145560/1‑139 ATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGTTTAACTAGTATCTGTCTCCGCTGGATATTAaagcgac > 1:257893/1‑136 ATACTTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAACCAGAAGAAAGATCGCCTGCTTAACAAGTATCTATATCAGCTAGATATTACCGCGGC > 1:587893/1‑143 TTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGCACGCTCGCCTGCTTAACGAGTATCTATCTCAAATGAATATTACAGAGGAACAa > 1:503408/1‑142 TTGCCTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAACGATCGCGTGCTTAACGAGAATCAGACACAGATGAATATTACCAAAGCACAG > 1:36215/1‑143 CTGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTA < 1:419794/143‑1 TGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAAGCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAA < 1:347964/143‑1 gaaCAACTAATATTAAAAGTACCAAAGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAG < 1:158448/140‑1 GGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCTTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAG > 1:385184/1‑143 GCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGGCGCTTAATCAATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTATCAACTGGCTATTACCGCTGCACAGCTTAcgtc > 2:654550/1‑139 GGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1618934‑1619079‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGT > NC_000913/1619115‑1619253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |