mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.1% | 113.1 / 58.3 | 94 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,473,884 | 0 | T | G | 21.2% | 127.2 / 10.8 | 66 | L94R (CTG→CGG) | yfdP | CPS‑53 (KpLE1) prophage; uncharacterized protein |
| Marginal new junction evidence (lowest skew 10 of 75 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 62 (0.900) | 9 (0.140) | 8/266 | 7.4 | 11.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 81 (1.250) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3087880 = | NA (NA) | 7 (0.110) | 7/264 | 7.8 | NA | intergenic (+20/‑404) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| ? | NC_000913 | 3087905 = | NA (NA) | intergenic (+45/‑379) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter | |||||
| * | ? | NC_000913 | 4213168 = | 76 (1.100) | 5 (0.080) | 5/262 | 8.9 | 6.4% | intergenic (+9/‑66) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| ? | NC_000913 | 4213199 = | 77 (1.210) | intergenic (+40/‑35) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 624184 | 72 (1.040) | 5 (0.080) | 5/266 | 9.0 | 6.7% | coding (327/957 nt) | fepB | ferrienterobactin ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 624208 | 71 (1.100) | coding (303/957 nt) | fepB | ferrienterobactin ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1220759 | 84 (1.220) | 5 (0.080) | 5/272 | 9.2 | 5.9% | pseudogene (1159/2574 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| ? | NC_000913 | = 1220768 | 80 (1.210) | pseudogene (1168/2574 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | 273987 = | NA (NA) | 6 (0.090) | 5/272 | 9.2 | NA | noncoding (1163/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274057 = | NA (NA) | noncoding (1093/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 3982692 | 65 (0.940) | 5 (0.090) +28 bp |
3/228 | 9.3 | 8.0% | noncoding (87/87 nt) | leuT | tRNA‑Leu |
| ? | NC_000913 | = 4606401 | 78 (1.130) | noncoding (1/87 nt) | leuQ | tRNA‑Leu | |||||
| * | ? | NC_000913 | 4606078 = | 73 (1.060) | 5 (0.090) +27 bp |
3/230 | 9.4 | 7.6% | intergenic (+38/+1) | yjjZ/leuV | uncharacterized protein/tRNA‑Leu |
| ? | NC_000913 | = 4606401 | 78 (1.130) | noncoding (1/87 nt) | leuQ | tRNA‑Leu | |||||
| * | ? | NC_000913 | = 4040683 | 59 (0.850) | 16 (0.230) | 5/280 | 9.4 | 19.3% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213162 | 76 (1.120) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 3946824 | 8 (0.120) | 6 (0.090) | 5/280 | 9.4 | 15.2% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4040681 | 59 (0.870) | intergenic (+45/+225) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||