New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	279163 =	NA (NA)	52 (0.740)	3/438	NT	63.4%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 2760086	30 (0.420)					coding (1102/1410 nt)	yfjI	CP4‑57 prophage; uncharacterized protein

ATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/279387‑279163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCGATCCAATGTCTTTCTGCTTCTGCAGAGAATCGGAGGCAG  <  NC_000913/2760086‑2759896                                                                                                                                                                                                                                                                                                                                                                                                                                  ATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATA                                                                                                                                                                                   >  1:525080/1‑239 ATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAAAAAGATGGAGTCATTACCCGGAAAAAGAaaaa                                                                                                                                                                                   >  2:576476/1‑235  tgcCGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATA                                                                                                                                                                                   <  1:480015/235‑1  TGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATA                                                                                                                                                                                   >  1:153792/1‑238   GACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGCCGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATCATCTGACCATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGAAATAa                                                                                                                                                                                  >  1:383276/1‑237   GACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATAT                                                                                                                                                                                  >  1:727046/1‑238     CGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGGCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGAACAAGGCATCGGGCATTATCTTAACATAAAAAACTATCAATAAGTTGGAGTAATTACCCGGAAACCGAAATATCG                                                                                                                                                                                >  1:528262/1‑238      GGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGC                                                                                                                                                                               >  1:744844/1‑238       gtgGGCTGGCCGTTGTATGAAGCCCGCCTGAAGGGAAAGGTGCCTGTAATCAGCAAGCGATATACCGAGGGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCC                                                                                                                                                                              <  1:788490/235‑1        ATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGGCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCT                                                                                                                                                                             >  1:47095/1‑238           GCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCAT                                                                                                                                                                         <  2:133588/239‑1             TGGGCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGGAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATC                                                                                                                                                                        <  1:86087/238‑1                   gtggATGAATCCCGCATGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGGGAATTGAGCGGCATAACCTGAATCTGAGGCAGCCCCTGGCACGGCTGGGAAGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTG                                                                                                                                                                 <  1:806955/235‑1                   agGTATGAACCCCCCCGGAAGGGAAAGCTGCACGTAAACAGAAAGCTATATACCAGGCCAATTGGGCGGCATAGCCTTAATCTGAGGGAGCCCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTAGCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGC                                                                                                                                                                   <  2:32187/235‑1                     GTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGGGATATACGCAGCGAATTGGGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCGGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAA                                                                                                                                                               <  2:424151/239‑1                      TATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCAT                                                                                                                                                                         <  1:866640/228‑1                         GAATCCCGCCTGCAGGGAAAGCTGCACGTAATCAGCCAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGTAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAAAAAGTTGGAGTCATTACCCGGTAACAGATATATCGCATCCATCACCGCTGAAGTAA                                                                                                                                                           <  1:344695/239‑1                         GAACCCCGCCTGAAGGGAAAGCCGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAA                                                                                                                                                           <  2:886936/239‑1                            TCCCGCCGGAATGGAAAGCTGCACGTAATCAGCAAGCGATATCCGCAGCGAATTGGACGGTATAACCTGAATCGGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGTTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCATCCATCACCGCTGAAGTAATG                                                                                                                                                         <  1:297357/238‑1                              CCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGT                                                                                                                                                                                             >  1:835806/1‑200                              CCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAAGTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGT                                                                                                                                                                                             <  2:835806/200‑1                                GCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCCTCACCGCTGAAGTAATGAAGaa                                                                                                                                                    >  1:460833/1‑237                                GCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGActg                                                                                                                                                     >  1:32187/1‑235                                GCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTA                                                                                                                                                    >  1:605251/1‑239                                GCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTA                                                                                                                                                    >  1:675705/1‑239                                GCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAAAACTATAAATAAGTTGGAGTCATTACCAGGTAACAGATCTATCGCATCCATCACCGCTGAAGTAATGAAGTA                                                                                                                                                    >  1:123689/1‑239                                GCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGCCGCTGTCGTTCTCAAAATCGGTGGAGCCGCATGACAAAGCCATCGGGCATTATCTGAAAATAAAACCCTATCAATAAGATGGAGTCATTACCCGGTAACCGATAAATCGCCTCCATCACCCCTGAAagaataaataa                                                                                                                                                    >  2:206621/1‑228                                 CCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGATTTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAA                                                                                                                                                   <  2:153792/239‑1                                 CCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAAAAAATTGGAGTCATTACCCGGTAACAAATATATCGCCTCCATCCCCCCTGAAGAAAAGAAATAA                                                                                                                                                   >  2:674055/1‑239                                            agcttctaGTAATCTGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATTTGAGGCAGCAACGGGGCAGGCTGGGAAGGAAGGCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCC                                                                                                                                        <  2:209492/231‑1                                                                 GATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGGCATTACCCGGTAACAGATATATCGCCTCCATCACCCCTGAAGTAATGAAGTAAGGCAGACAGCCCCCCCATTTTTTCCCCCATTT                                                                                                                   >  2:35728/1‑239                                                                   taaccggAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCGGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTA                                                                                                                 <  1:469057/232‑1                                                                    ATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAG                                                                                                                <  1:641950/239‑1                                                                    ATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAG                                                                                                                <  1:636277/239‑1                                                                          AGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAAAAGATATATCGCCTCCATCACCGCTGACGTAATGAAGTAAGGCAGCAAACCCCGCCATGTTCTCCCCCATTTTgaaagaat                                                                                                          >  2:506760/1‑231                                                                          AGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAAAAGATATATCGCCCCCATCACCGCTGAAGTAATGAAGTAAGGCAGAAAGCCCCGCCCTGTCCTCCCCCCTTTTAAAAGaaa                                                                                                          >  2:673089/1‑236                                                                             GAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAA                                                                                                        >  1:46976/1‑238                                                                                   AGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAA                                                                                                 <  1:674055/239‑1                                                                                        CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATGGCCTCAATAACCGCGGAAGAAATGAAGTAAGGCAGCAAGCCTCGCCACGTTATCCGCAATTTTAGAAGCATAATCCTTAAAATCA                                                                                            >  1:452518/1‑239                                                                                             CCTGAATCTGGGGCAGCACCTGGGACGGCTTGTACGGAAGTCGCTTTCGTTCTTAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACTCTAACAATAAGTTGGAGTCATTACCCGGTAACAGATAGATCGACTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAG                                                                                       <  1:496632/239‑1                                                                                                  ATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCAT                                                                                                                                                                         >  1:472252/1‑152                                                                                                  ATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCAT                                                                                                                                                                         <  2:472252/152‑1                                                                                                     ttagtccGCACCTGGCACGGCTGGGACGGAAGTCGTTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCCTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAA                                                                               <  2:265789/232‑1                                                                                                             CACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGAAATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCCTGTTCTCAGCCATTTTAGAAGCATAATCCTTAAACACATAACGAAGGCCAATCATTt                                                                         >  1:766614/1‑236                                                                                                              ACCTGGCACGGCTGGGACGGAAGTCGTTGTCGTTCTCAAAACCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCT                                                                        <  1:206621/237‑1                                                                                                                       GGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACT                                                             <  1:142207/239‑1                                                                                                                             GACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGCAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAA                                                                                                              >  1:207676/1‑184                                                                                                                                   AGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCAACGGGCATTATCTGAACATAAAACACTAGCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTG                                                  <  1:35728/238‑1                                                                                                                                          GTCGGTCTCAAAATCGGTTGAGCAGCATGACAAAGTCATCGGTCATTATCGAAACATAAAACACTATCAATAAGTTGGAGTCATGACCCGGTAACAGATATATCGCCTCCAACACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATT                                           <  1:524323/238‑1                                                                                                                                                                    ATGAAAAAGTCATCGGTCATTATCTTAACATAAAACACTATAAATAAGTTAGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCTATCCAATGTCTTTCTGCTTCTGCAG                <  2:123689/239‑1                                                                                                                                                                     TGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAACAAGGCCAATCATTCTCATTTCTCACCTGCCCTGGTTGTACAATTCGAGCCAAATTCTTTTTGCTTttccaaa               >  2:31615/1‑232                                                                                                                                                                                  GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCGATCCAATGTCTTTCTGCTTCTGCAGAGAATCGGAGGCAG  >  1:705077/1‑239                                                                                                                                                                                                                    gTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCGATCCAATGTCTTTCTGCTTCTGCAGAGAAT           <  1:396005/195‑1                                                                                                                                                                                                                    TTGGAGTCATTACCCGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCGATCCAATGTCTTTCTGCTTCTGCAGAGAAT           >  2:396005/1‑196                                                                                                                                                                                                                                                                                                                                                                                                                                  ATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/279387‑279163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGTAACAGATATATCGCCTCCATCACCGCTGAAGTAATGAAGTAAGGCAGCAAGCCTCGCCATGTTCTCCGCCATTTTAGAAGCATAATCCTTAAAATCATAAAGAAGGCCAATCATTCTCATTTCTGACTCGACCTGGTTGTAGAATTCGATCCAATGTCTTTCTGCTTCTGCAGAGAATCGGAGGCAG  <  NC_000913/2760086‑2759896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.