Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp 100% [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 83 [0] [0] 84 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)82 (1.220) 56/418 NT 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

GCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGC  >  NC_000913/3815706‑3816179
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                              
acgttgcctgctcgcgcccggtattacacagccctgctttgaataaataggggcttttgcgcactgatttcagcgtaaacgcgccaagttttaccccctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggctactcatcagtctccttaaaaatcagtttgccagcgccgccttctgcCGTc                                                                                                                                                                                                                                             <  2:816166‑M2/4‑1 (MQ=255)
     gccgaatcgcgcccggtattaaacagcccggggttgaagaaatgggcgcttttgcgcccggatttcagcgtaaactcgccaaactttaactcctgcttgctaagcgcaaattcaataacctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcccc                                                                                                                                                                                                                                          <  1:370622‑M2/7‑1 (MQ=255)
     gccagatcgagcccggtatgaaacagcccggcgttgaagaaataggggcttttgcgcccggatgtcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                                                                                                                        <  1:317688‑M2/9‑1 (MQ=255)
      ccagatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcctcagtcgccttaaaaatcagtttgcaagcgcccccttctgcCGCCCCCTg                                                                                                                                                                                                                                        >  2:728245‑M2/230‑238 (MQ=255)
      ccagatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                                                                                                                        >  1:166231‑M2/230‑238 (MQ=255)
      ccagatcgcccccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                                                                                                                        <  1:452749‑M2/9‑1 (MQ=255)
          atcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctccagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCgtcccctcacctt                                                                                                                                                                                                                                   >  1:886922‑M2/226‑233 (MQ=255)
          atcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaacaaaaggcgactcatcagtcgccttacacatcagtttgccagcgccgccttctgcCGTGCCCCGAActc                                                                                                                                                                                                                                   >  2:317688‑M2/226‑238 (MQ=255)
              cgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctcaagacaaaaaaaaggcgactcatcagtcaccttaaaaaaccgtttgccaccgccgccttctccCGTCCCCTGCCATTCAat                                                                                                                                                                                                                               >  2:473283‑M2/222‑239 (MQ=255)
              cgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGAACTTCAat                                                                                                                                                                                                                               >  1:632970‑M2/222‑239 (MQ=255)
              cgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttcctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctccccatcttacttttctacagccaacaaaaaagcactccaccagcccccttcaaaaacagtttgcaacccccgcctcctcccgtcccccaaacttccat                                                                                                                                                                                                                               >  2:754178‑M2/222‑228 (MQ=255)
                      agtaaacagcccggtgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcgc                                                                                                                                                                                                                        <  1:791983‑M2/25‑1 (MQ=255)
                           caagcccggctttgaaaaaatagggtcttttgcgcccggattgaagcgtaaacccgccaaactttaacccctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCt                                                                                                                                                                                                                  <  2:90055‑M2/31‑1 (MQ=255)
                               cccggcgttgaagacataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcattttgccagagccgccttctgcCGTCCCCTGCACTTCAATGATTCGCCCGTCTTCgg                                                                                                                                                                                                              >  2:622780‑M2/205‑239 (MQ=255)
                               cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaacaaaggcgactcatcactcgccttaaaattcagtttgccagcgcccccctctgcCGTCCCCTGCCCTTCAATGAtgcccccgcgttggg                                                                                                                                                                                                              >  2:478674‑M2/205‑232 (MQ=255)
                               cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaacaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                                                                                                                               >  1:471513‑M2/205‑238 (MQ=255)
                               cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatccgtttgccagcgccgcctgctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                                                                                                                               >  1:472310‑M2/205‑238 (MQ=255)
                               cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                                                                                                                                                              >  1:800228‑M2/205‑239 (MQ=255)
                               cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagccccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                                                                                                                                                              >  2:633837‑M2/205‑239 (MQ=255)
                               cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcaccgccttctgcCGTCCCCTGCACTTCAATGATTCGACCGTCTTCg                                                                                                                                                                                                               >  1:780542‑M2/205‑238 (MQ=255)
                               cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaaatcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                                                                                                                                                              >  1:652601‑M2/205‑239 (MQ=255)
                                  ggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacccctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                                                                                                                                                                                           <  1:107799‑M2/38‑1 (MQ=255)
                                    cgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttcggcCGTCCCCTGCACTTCAATGAGCCGCCCGTCTTCGGccatc                                                                                                                                                                                                         >  2:110439‑M2/200‑239 (MQ=255)
                                     gttgaagaaataggggcttttgcccccggatttcagcgtaaacgccccaaactttaacccctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                                                                                                                                                                        <  2:891997‑M2/41‑1 (MQ=255)
                                       tgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                                                                                                                                                                       <  1:12842‑M2/42‑1 (MQ=255)
                                       tgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt                                                                                                                                                                                                      <  2:744138‑M2/43‑1 (MQ=255)
                                         aagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTAc                                                                                                                                                                                                    >  1:40187‑M2/195‑239 (MQ=255)
                                             aagtggggcttttgcgccgggttttcagcttaaaccccacaaactttaacccctgcttgctaagcccaaactcaataaactggcgctgaaatggtttcatgccttcgttcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                                                                                                                                                                <  2:543701‑M2/49‑1 (MQ=255)
                                              ataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCa                                                                                                                                                                                               >  1:672408‑M2/190‑239 (MQ=255)
                                              ataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttctctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTTCAATGTTCCGCCCGTCTTCGGTCATCACTCCGTtct                                                                                                                                                                                               >  1:850370‑M2/190‑238 (MQ=255)
                                                   ggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGTCAtcactacgtcaatgacg                                                                                                                                                                                          >  2:692825‑M2/185‑231 (MQ=255)
                                                    gtttttgcccccggatttcagcgtaaacccgccaaactttaacccctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                                                                                                                                                                                          <  2:753328‑M2/55‑1 (MQ=255)
                                                      ttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatccgtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGCCTTCGGTCATCCCCACGTTCCTTTcggg                                                                                                                                                                                        >  2:509399‑M2/182‑237 (MQ=255)
                                                       tttccgtcccgatttcagcttcactctgccaaacgttaactcctgcttgctaagcctacagtcaataaactggcgctgtttttgtttcaggccttcgctcctcatccttcttttctacagacaaaaaaaaggctactcctcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct                                                                                                                                                                                      <  2:823353‑M2/59‑1 (MQ=255)
                                                         tgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCACTACGTTCATGtcggcc                                                                                                                                                                                       >  1:560112‑M2/179‑234 (MQ=255)
                                                                            aaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTCCGCCAGAGTCTTCAAcgg                                                                                                                                                                 >  1:164641‑M2/160‑238 (MQ=255)
                                                                                   ccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAg                                                                                                                                                          >  1:652991‑M2/153‑239 (MQ=255)
                                                                                   ccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGGCTTCAACGTATTCCAg                                                                                                                                                          >  2:452426‑M2/153‑239 (MQ=255)
                                                                                            aacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCCCaaa                                                                                                                                                  >  1:825256‑M2/144‑238 (MQ=255)
                                                                                                   gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATTTCGGTCTCTGCGGCAGAGTCTTCAACGCATTCACAATCGCAAACCGCTTc                                                                                                                                           >  2:38419‑M2/137‑238 (MQ=255)
                                                                                                   gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGGCTTCAACGTTTTCCAGATCGCAAACCGCTTc                                                                                                                                           >  1:885648‑M2/137‑238 (MQ=255)
                                                                                                   gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCAATTCAATGATGCGCCCGCCTTCGGTCATCACTAAGTTCCTGTCGGTCTCTGCGGCAGAGGCTTTAACGGATTCACAACCCCAAACCGCTTc                                                                                                                                           >  2:303060‑M2/137‑238 (MQ=255)
                                                                                                     tttctaaaggcaatttcataaaactggcgcttatattgtttcaggccttcgctcctcatcttaactttctgcagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGcc                                                                                                                                        <  2:698056‑M2/105‑1 (MQ=255)
                                                                                                             cgcaaattcaataaactggcgctgatatggattcatgccttcgctcctcatcttacttttctccagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCTCCCGTCTTCGGTCATCACTACGTTCATGTCTGTCTCTGCGGCCAAGTATTCACCGTATTCCAAATCGCAAACCGCTTCGCCGTTCACaa                                                                                                                                >  2:539276‑M2/127‑239 (MQ=255)
                                                                                                                             tggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAactcc                                                                                                                >  1:803761‑M2/111‑237 (MQ=255)
                                                                                                                               aaaagaggcaggtttcatgccctcccccctcatcttacttttctacagacaaaaaaaaggcgacccatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAGACTGCgg                                                                                                              <  1:471851‑M2/131‑1 (MQ=255)
                                                                                                                                cgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAACCTGCGGc                                                                                                             >  1:179972‑M2/108‑239 (MQ=255)
                                                                                                                                cgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATACCAAAACGCTTCCCCCTCCACAATTCCACCAGAAACAGCgg                                                                                                              >  2:404680‑M2/108‑238 (MQ=255)
                                                                                                                                cgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGGCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGc                                                                                                             >  1:547638‑M2/108‑239 (MQ=255)
                                                                                                                                     atatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGCTCATGTCGGTCTCGGCGGCGGGTCCTTCAACGTATTCCAAATCGCAAACCGTTTCCCCGTACACAATTCCGACAAAAAATccggcacca                                                                                                         >  2:280768‑M2/103‑234 (MQ=255)
                                                                                                                                     atatggtttcatgccttcgctcctcatcttaattttctaaagacaaaaaaaaggccactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCa                                                                                                        <  1:216693‑M2/137‑1 (MQ=255)
                                                                                                                                               atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCCTGTCGGTCTCTACGGCAGAGGCTTAACCGTTTTCCAGATCCCAAACCGCTTTCCCGTTCACAATTCCCACAGAAACCGGGGCCACCTCCCCCTTcac                                                                                              >  2:358663‑M2/93‑238 (MQ=255)
                                                                                                                                               atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGCCAGAAACTGCGGCTACCATCCCTTTCa                                                                                               >  1:623293‑M2/93‑238 (MQ=255)
                                                                                                                                               atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTAACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCAt                                                                                              >  1:685975‑M2/93‑239 (MQ=255)
                                                                                                                                                tgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTCCCATCCCTTTCATc                                                                                             >  1:303747‑M2/92‑239 (MQ=255)
                                                                                                                                                    ttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGCAAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTACCAATTCCGACAGAAACTGCGGCTACAATCGCTTTCTTCGGAt                                                                                         >  1:664741‑M2/88‑239 (MQ=255)
                                                                                                                                                    ttccctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGAt                                                                                         <  1:806856‑M2/152‑1 (MQ=255)
                                                                                                                                                     tcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCCCAAACCGCTTCGCCGTTCACAATTCCGACAAGGACCGCGgctaccatccctccgtccctttc                                                                                        >  2:471851‑M2/87‑228 (MQ=255)
                                                                                                                                                      cgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAACCTGCGGCTACCATCCCTTTCATCGGATTg                                                                                       >  1:288292‑M2/86‑239 (MQ=255)
                                                                                                                                                          cctcatcttacttttctacagacaaaaaaaaggacactcatcagtcgacttaaaaatcagtttgccagcgcctctttcggcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGttt                                                                                   <  1:60290‑M2/158‑1 (MQ=255)
                                                                                                                                                             catcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGATGCTTCAACTGATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAAATGCCGCCACCAACCCTTTCACCCGAATggttttaa                                                                                >  2:515857‑M2/79‑237 (MQ=255)
                                                                                                                                                             catcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTCCCATCCCTTTCATCGGATTGGTTTTc                                                                                 >  1:535780‑M2/79‑238 (MQ=255)
                                                                                                                                                             catcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTc                                                                                 >  1:227454‑M2/79‑238 (MQ=255)
                                                                                                                                                                   acttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTg                                                                           >  1:233998‑M2/73‑238 (MQ=255)
                                                                                                                                                                   acttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCCCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTg                                                                           >  1:736753‑M2/73‑238 (MQ=255)
                                                                                                                                                                   acttttctacagacaaaaaaaaggcgactcatcaggcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGc                                                                          <  1:633837‑M2/167‑1 (MQ=255)
                                                                                                                                                                        tctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGGCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGCTCTCTGCGGCAGAGTCTTCAACGGATTCACGAACACAAACCGCTTCGCCGTTCACAATTACGACAAAAACTGGAGCTCAAATCCCTTTCATGGaataggttgtcaaattgacattt                                                                     >  2:245137‑M2/68‑228 (MQ=255)
                                                                                                                                                                          tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACCGAAACTGCGGCTACCATCCCTTCCCTCGGCTTGGTTTTCAGCTAGCCGgttt                                                                    >  2:269983‑M2/66‑238 (MQ=255)
                                                                                                                                                                            cagacaaaaaaaaggagactcaacagtccgctgaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTcca                                                                 <  1:54092‑M2/176‑1 (MQ=255)
                                                                                                                                                                              gacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACCACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCCCAAACCGATTCGCCGTTCACAATTCCGATAGGAACTCCGGCTACCATCCCTTTCACAGGATTGGTTTTACGCATTCCCttttcaccc                                                               >  2:309874‑M2/62‑235 (MQ=255)
                                                                                                                                                                               acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCACCGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGCCAGAAACTGCGGCTACCATCCCTTTCATCGGCTTGGTTTTTAGCTTGCCGTTTTccacc                                                               >  1:766293‑M2/61‑238 (MQ=255)
                                                                                                                                                                                caaaaaaaaggcgacttcatagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTccacc                                                               <  1:358439‑M2/178‑1 (MQ=255)
                                                                                                                                                                                caaaaaaaaggcgactcatcagtcgccttaaaaatccgtttgcccgcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTcca                                                                 <  1:728245‑M2/176‑1 (MQ=255)
                                                                                                                                                                                 aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCCGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCCAAATTCCCCCAGAAAATGCGCCTCCCATCCCTTTCCCAGCATTGTTTTCTAGCTTGCcgttttcaccccg                                                             >  2:767488‑M2/59‑232 (MQ=255)
                                                                                                                                                                                        aggggcctcatctgtcgctttaaaaatcaggttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTTTTCGGTCATCACTCCGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATCCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTa                                                     <  2:535780‑M2/188‑1 (MQ=255)
                                                                                                                                                                                           cgactcacacgtcgccttaaaaatcagtttgccagccccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAgc                                                   <  1:509399‑M2/190‑1 (MQ=255)
                                                                                                                                                                                             actcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCAACCATCCCTTTCACCGGCTTGGTTTTCCGCTTGCCTTTTTCACCCcgcctctggacccca                                                >  2:806980‑M2/47‑232 (MQ=255)
                                                                                                                                                                                                        gccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTAACAgcg                                      >  1:687368‑M2/36‑238 (MQ=255)
                                                                                                                                                                                                         ccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAgcgc                                     >  1:560545‑M2/35‑238 (MQ=255)
                                                                                                                                                                                                          cttaaaaatcggtttcccgtcgccgccttcttcCGTCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAGGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAGCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGcc                                    <  2:166231‑M2/205‑1 (MQ=255)
                                                                                                                                                                                                                aaatcgtttgccccggccgccctctgcCGTCCCCTACACTTAAATGGTGCGCCCGTCTGCGGTTCTCCCTACGTTCATTGCGGGCTCTGCGGCCGGATCTTCAACCTATTCCAAATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAgg                             <  2:632970‑M2/212‑1 (MQ=255)
                                                                                                                                                                                                                    agtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCTCAtttaccagcgcccgccaggccc                          >  1:544552‑M2/24‑228 (MQ=255)
                                                                                                                                                                                                                    agtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCAc                          >  1:275651‑M2/24‑238 (MQ=255)
                                                                                                                                                                                                                                           cGTCCCCTTCCCTTCAATGGTGCCCCCGTCTTCGGTCATCACTACGTTCATGGCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGAAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGc  <  2:40187/239‑1 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                              
GCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGC  >  NC_000913/3815706‑3816179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.