| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,273,648 | Δ1 bp | 5.3% | intergenic (‑49/‑136) | ychN ← / → ychO | putative sulfur relay protein/putative invasin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,273,648 | 0 | G | . | 5.3% | 277.9 / 7.7 | 76 | intergenic (‑49/‑136) | ychN/ychO | putative sulfur relay protein/putative invasin |
| Reads supporting (aligned to +/- strand): ref base G (36/36); new base . (2/2); total (38/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.20e-01 | |||||||||||
TTTTGCACAATTTCACCGGTACATTCTGAGCGGTAAGGATCTCCAGCATTTGCTGAATGTTGTAGCCTTCCCCTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGCACAATCTACCTTCGAGCAAAAAGCGGCAAATCCCTTTGATAATAACAATGATGGTCTGCCGGATTTAGGCATGGCTCCCG > NC_000913/1273362‑1273934 | ttttGCCCAATTTTACCGGTACATTCTGGGCGGTAAGGGTCTCCAGCATTTGCTGAATGTTGTAGCCTTCCCCTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGc < 2:567211/288‑1 (MQ=255) gCACAATTTCACCGGTACATTCTGATCGGTAAGGATCTCCAGCATTTGCTGAATGTTGTAGCCTTCCCCTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAACTAAGGATTCGCTCCCGTAAGGTGCGCCTTTGGCAACGATCACGATTTTTTCACTTATTTACTCCTGTATTCAGGGCCTTAGTAACTCATATTCTATCTTACTGCTTcc > 2:494225/1‑287 (MQ=255) aTTTCACCGGTACATTCTGAGCGGTAAGGATCTCCAGCATTTGCTGAATGTTGTAGCCTTCCCCTGGTTTTTGACCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCg > 2:534376/1‑289 (MQ=255) gTACATTCTGAGCGGTAAGGATCTCCAGCATTTGCTGAATGTTGTAGCCTTCCCCTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCaa > 2:267579/1‑289 (MQ=255) aCATTCTGAGCGGTAAGGATCTCCAGCATTTGCTGAATGTTGTAGCCTTCCCCTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATc > 1:481842/1‑289 (MQ=255) aCATTCTGAGCGGTAAGGATCTCCAGCATTTGCTGAATGTTGTAGCCTTCCCCTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATc > 1:112841/1‑289 (MQ=255) cATTCTGAGCGGTAAGGATCTCCAGCATTTGCTGAATGTTGTAGCCTTCCCCTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCg > 1:729085/1‑289 (MQ=255) aTTTGCTGAATGTTGTAGCCTTCCCCTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGaa > 1:73835/1‑289 (MQ=255) aTTTGCTGAATGTTGTAGCCTTCCCCTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTA‑TTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATAGGTCACATTTTTAAGGATTTTCCTGa < 1:286774/287‑1 (MQ=255) ttCCCCTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACaa < 1:110750/289‑1 (MQ=255) ttCCCCTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATAAGACaa > 2:99743/1‑289 (MQ=255) ttCCCCTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAACGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCATATTTTTAAGGAGTTTCCTGAAAGCGCGAGAAAATACGACaa > 1:690340/1‑289 (MQ=255) ccccTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACaaac > 2:563543/1‑288 (MQ=255) cTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGtt < 2:32720/289‑1 (MQ=255) cTGGTTTTTGCCCCCGCAACCCGCCTGTGACCGCATCAGACATGGGGAACAGACGCAGATCCAGTTGCCTCTCCTGCTCCCGTAACGCAAGGGCCAGCCCCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGtt < 1:529860/289‑1 (MQ=255) ggTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTg > 2:245485/1‑288 (MQ=255) ggTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGc < 2:73835/289‑1 (MQ=255) cgcAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTa < 2:729085/289‑1 (MQ=255) ccGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCttt < 1:753370/289‑1 (MQ=255) aTCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt > 1:102833/1‑289 (MQ=255) aCATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCatt < 2:600449/289‑1 (MQ=255) cATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCat < 2:112841/287‑1 (MQ=255) aGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCtt < 1:448670/264‑1 (MQ=255) aGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCtt > 2:448670/1‑264 (MQ=255) aGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCAttatta > 2:110495/1‑288 (MQ=255) aGGAACAGACGCAGATCCAAATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCatt < 1:563543/284‑1 (MQ=255) cAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGaa > 2:317462/1‑289 (MQ=255) tCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCg < 1:267579/286‑1 (MQ=255) ctctCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACT‑CTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAACAGTTGCCAGTAATCGtt > 1:777895/1‑225 (MQ=255) ctctCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACT‑CTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGtt < 2:730749/225‑1 (MQ=255) ctctCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACT‑CTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGtt < 2:777895/225‑1 (MQ=255) ctctCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACT‑CTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGtt > 1:730749/1‑225 (MQ=255) ctcGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCttt < 2:388666/231‑1 (MQ=255) ctcGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCttt > 1:388666/1‑231 (MQ=255) cGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTtttatt < 1:110495/289‑1 (MQ=255) ttAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTcttgc < 1:317462/289‑1 (MQ=255) ggATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCTAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAg > 2:324660/1‑240 (MQ=255) ggATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAg < 1:324660/240‑1 (MQ=255) aTTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCa < 1:736233/287‑1 (MQ=255) cGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCgg < 1:534376/289‑1 (MQ=255) aaGGTGCGCCATTAGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACAATCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTa < 1:631528/288‑1 (MQ=255) aGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAAc < 2:481842/289‑1 (MQ=255) tGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAATTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGc > 2:228311/1‑288 (MQ=255) gcgcCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGca < 1:245485/288‑1 (MQ=255) cgcCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGcaca > 1:293958/1‑289 (MQ=255) cgcCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGca > 1:110865/1‑287 (MQ=255) cgcCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGca < 2:171627/287‑1 (MQ=255) cgcCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGca > 1:171627/1‑287 (MQ=255) cgcCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGca < 2:110865/287‑1 (MQ=255) tGCATTAGTTACTCCTGGATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCGGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGCACAATCTACCTTCGAGCAAAAAGCGGCaa < 2:110654/289‑1 (MQ=255) attattTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGCACAATCTACCTTCGAGCAAAAAGCGGCAAAt < 2:102833/288‑1 (MQ=255) tCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATc < 1:452538/204‑1 (MQ=255) tCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATc > 2:452538/1‑204 (MQ=255) tCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAg < 1:280122/232‑1 (MQ=255) tCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAg > 2:280122/1‑232 (MQ=255) tGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGca > 2:111317/1‑246 (MQ=255) tGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGca < 1:111317/246‑1 (MQ=255) tATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGCCAACAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGATGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGACTCATCCCGTTTTATTTACTCTTGCTTGTAGCCGGCGGTACAGCTACCGCAAAATCTCCCTTCGAGCAAGCATCGGACACTCCCTTTGATGATCAc > 2:411212/1‑289 (MQ=255) tATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGca > 1:568305/1‑244 (MQ=255) tATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGca < 2:568305/244‑1 (MQ=255) ggAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTa > 1:672029/1‑118 (MQ=255) ggAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTa < 2:672029/118‑1 (MQ=255) aTTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTGCAGCTAACGCACAATGTACCTTCGAGCAAAAAGCGGCAAATCCCTTTGATAATAACAATGATgg > 1:184129/1‑287 (MQ=255) aTTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGCACAATCTACCTTCGAGCAAAAAGCGGCAAATCCCTTTGATAATAACAATGATgg > 1:551575/1‑287 (MQ=255) tCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCGCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGCACAATCTACCTTCGAGCAAAAAGCGGCAAATCCCTTTGATAATAACAATGATGGTCTGCCGGAtt > 2:15286/1‑289 (MQ=255) tCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTActc > 1:505265/1‑195 (MQ=255) tCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTActc < 2:505265/195‑1 (MQ=255) aTCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAATTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGCACAATCTACCTTCGAGCAAAAAGCGGCAAATCCCTTTGATAATAACAATGATGGTCTGCCGGATTTAGGCATgg < 1:228311/289‑1 (MQ=255) aCTGCTTCTGCAGCGTCTGACCAATCGGTCACCTTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGCACAATCTACCTTCGAGCAAAAAGCGGCAAATCCCTTTGATAATAACAATGATGGTCTGCCGGATTTAGGCATGGCTccc > 1:664376/1‑289 (MQ=255) aCTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGt > 2:678369/1‑84 (MQ=255) aCTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGt < 1:678369/84‑1 (MQ=255) aCTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGCACAATCTACCTTCGAGCAAAAAGCGGCAAATCCCTTTGATAATAACAATGATGGTCTGCCGGATTTAGGCATGGCTccc > 2:221263/1‑289 (MQ=255) aCTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGCACAATCTACCTTCGAGCAAAAAGCGGCAAATCCCTTTGATAATAACAATGATGGTCTGCCGGATTTAGGCATGGCTcc > 2:105940/1‑288 (MQ=255) cTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACaa > 1:421645/1‑72 (MQ=255) cTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACaa < 2:421645/72‑1 (MQ=255) cTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTGCAGCTAACGCACAATGTACCTTCGAGCAAAAAGCGGCAAATCCCTTTGATAATAACAATGATGGTCTGCCGGATTTAGGCATGGCTCCCg < 2:184129/289‑1 (MQ=255) | TTTTGCACAATTTCACCGGTACATTCTGAGCGGTAAGGATCTCCAGCATTTGCTGAATGTTGTAGCCTTCCCCTGGTTTTTGCCCGCGCAACCCGGCTGTGACCGCATCAGACATGAGGAACAGACGCAGATCCAGATTGCTCTCCTGCTCTCGTAACGCAATGGCCAGCCGCAAGCTGTTAAACAAGGATTCGCTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTCAGGGAATTAGACACTCATCTTCTATCTTACTGCTTCTGCAGCGTCTGACCAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGGAAGTTACCGACGTTTTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGCACAATCTACCTTCGAGCAAAAAGCGGCAAATCCCTTTGATAATAACAATGATGGTCTGCCGGATTTAGGCATGGCTCCCG > NC_000913/1273362‑1273934 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |