| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3832178 = | NA (NA) | 4 (0.050) | 4/264 | 11.2 | NA | noncoding (1/27 nt) | REP277 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP277 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3832205 = | NA (NA) | intergenic (+39/+14) | yicH/yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TGCCTGCGCAATGTTGTGAAAGTAAATGGTCTGCAAGACGGTTCGCAGGCTGAAAGTGAGCAGGGGCTGGTGGTGAAGCCTCAAGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGTACCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3832329‑3832178‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtacccggcATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGTCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCG > NC_000913/3832205‑3832346 TGCCTGCGCAATGTTGTGAAAGTAAATGGTCTGCAAGACGGTTCGCAGGCAGAAAGTGAGCAGGGGCTGGTGGTGAAGCCTCAAGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTC < 2:165173/143‑1 CCTGCGCAATGTTGTGAAAGTAAATGGTCTGCAAGACGGTTCGCAGGCTGAAAGTGAGCAGGGGCTGGTGGTGAAGCCTCAAGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCCGGGACGTCTGAGTCGT > 2:262080/1‑143 TGCGCAATGTTGTGAAAGTAAATGGTCTGCAAGACGGTTCGCAGGCTGAAAGTGAGCAGGGGCTGGTGGTGAAGCCTCAAGGGAATGCGCTGACGATTACGTTGTAGTCTATTGATGGAATGCCGTGTACGTCTGAGTCGTcc > 2:676623/1‑141 gtgATGTTGTGAGAGTAAATGGTCTGCGAGACGGTTCGCAGGCTGAAAGTGGGCAGGGGCTGGTGGTGAAGCCTCAAGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGTACCCG < 2:296175/140‑1 AATGTTGTGAAAGTAAATGGTCTGCAAGACGGTTCGCAGGCTGAAAGTGAGCAGGGGCTGGTGTTGAAGCCTCAAGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGTACCCGGC > 2:23107/1‑143 ATGGAATGCCGGGTACGTCTGAGTCGTACCCGGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTG < 1:878520/114‑1 ATGGAATGCCGGGTACGTCTGAGTCGTACCCGGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTG > 2:878520/1‑114 CGTCTGAGTCGTACCCGGCATTCCATCAATAGATTACAA < 1:493475/39‑1 CGTCTGAGTCGTACCCGGCATTCCATCAATAGATTACAA > 2:493475/1‑39 cagcCGTACCCGGCATTCCATCACTAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGTCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGT < 2:955752/139‑1 GTACCCGGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGTCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCA < 2:1295783/143‑1 TACCCGGCATTCCATCAATAGATGACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGACCCGTCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAG < 2:924301/143‑1 CCGGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGACTTGCAGACCATGTACTTTCACAACATCGCGCAGGCACAGCGTCCAGTTC > 1:495179/1‑143 CGGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACAAGCCCCTGCTCACTTTCAGCCTGCGAACCGTCTTGCAACCCATTTCCTTTCACACCCTTGCGCAGGCACAGTGTCCAGTTCT > 2:992708/1‑143 GGCCTTCCATCATTAGCTTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGTCTTGCAGACCACTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTT < 2:1270250/143‑1 GGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGTCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCCGTTCTc > 2:1356560/1‑142 GGCATTCCATCAATAGATTACAAAGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCAATTTCAGCCTGCGAACCTTCTTGCAGACCATTTACTTTCACAACATTCCGCAGGCACCGTGCCCAGTCCTT > 2:866823/1‑143 GCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCCCACTTTCACCCTGAGAACCATCTTGCAGCCCATTTCCTTTAACAACATTGCGCAGGCACAGTGTCCAGTTCTTC > 2:22126/1‑143 CATTCCATCACTGCATTACAACGTAATGGTCAGCGCACTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGTCTTGCAGACCATTTACTCTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCG < 2:768141/143‑1 TGCCTGCGCAATGTTGTGAAAGTAAATGGTCTGCAAGACGGTTCGCAGGCTGAAAGTGAGCAGGGGCTGGTGGTGAAGCCTCAAGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGTACCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3832329‑3832178‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtacccggcATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGTCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCG > NC_000913/3832205‑3832346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |