New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3915903	41 (0.870)	3 (0.060)	3/280	7.2	6.4%	coding (70/420 nt)	atpC	F1 sector of membrane‑bound ATP synthase, epsilon subunit
	?	NC_000913	= 3915925	47 (1.010)					coding (48/420 nt)	atpC	F1 sector of membrane‑bound ATP synthase, epsilon subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCAT  >  NC_000913/3915761‑3916040                                                                                                                                               |                                                                                                                                          tCAAGACTGCCGCCATACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAACCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGAt                                                                                                                                           <  2:107852/143‑1 (MQ=255)   aaGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTAGCTACCCGTTACCTCGAtgt                                                                                                                                         >  2:707669/1‑141 (MQ=255)              cagacagaTAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGGGGTGCGTGGCCAGGGTAGATTCCCAGTTCACCTTCGCTACCCGCTACGTGGATTGTCTCgaccaga                                                                                                                              >  2:667654/1‑143 (MQ=255)                           atccgctTCGTGACCGTGCTGTGGTACGACGCGAACCATACCAGGCTTACTCGCTGTGAACAGCGGTGGGGGAACAGGGTAGATCCCCAGTGCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACAttt                                                                                                                 <  2:464391/138‑1 (MQ=255)                                 ttCGTGACCGTGCTGTTTCACGATGCGAATCATACCCGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGCCCAAACCAGAGAACCTCTGTTGct                                                                                                           >  2:399273/1‑143 (MQ=255)                                     tGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTgc                                                                                                       <  1:806464/143‑1 (MQ=255)                                      gACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTGGTTGGTCTgcg                                                                                                      >  1:282402/1‑143 (MQ=255)                                        ccGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTTGTCAAGACCAAAAAACATTTGTTGCTATgcgat                                                                                                    >  1:33476/1‑141 (MQ=255)                                         cGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGGGAAGATTTGGTGCTATGCGCTg                                                                                                   >  1:88169/1‑143 (MQ=255)                                           tGCTGTTTCACGATGCGAGTCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGAACCCGAGCTCGTCGTCTCGAGCGGTTACCTGGATATTCTCGACGAGACCAGAGAACATTAGTTGCGCTGGGCTgac                                                                                                 >  1:233136/1‑143 (MQ=255)                                              tGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCACCAGTTCACCTTCGCTACCCGTTACCTGCATTTTCTCGCCCAGACCAGATCACATTTGTTGCTCTACGCTgaggcc                                                                                              >  2:18572/1‑139 (MQ=255)                                                tttCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCCTCGCTACCCGTTACCTGGCTTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGt                                                                                            >  1:197240/1‑143 (MQ=255)                                                    aCGATGCGAATCATACCAGCCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAg                                                                                        <  1:530829/143‑1 (MQ=255)                                                     cGATGCGAATCATACCAGGCTTAATGGCGGTGCGCAGCGGTGCGTGGCCAGGCTAGATCCCCAATTCACCTTCGCTAACCATTACCTAGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAgg                                                                                       >  1:723558/1‑143 (MQ=255)                                                       aTGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGCTCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAggtg                                                                                     <  1:268699/143‑1 (MQ=255)                                                       aTGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACTACGTCCAggtg                                                                                     >  1:100889/1‑143 (MQ=255)                                                       aTGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAggtg                                                                                     <  1:753113/143‑1 (MQ=255)                                                          cGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTa                                                                                  >  2:366274/1‑143 (MQ=255)                                                           gAAGCAGACCAGGCGTAATGGCGGGGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTaa                                                                                 <  1:289398/143‑1 (MQ=255)                                                                      ggCTTAATGTCGGTGAGCAGCGGTGCGTGGCCAGGGTAGCTCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCat                                                                      <  1:842067/143‑1 (MQ=255)                                                                         ttAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATc                                                                   >  2:262366/1‑143 (MQ=255)                                                                                 ggTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCGCTGCGCTGACGACGTCCAGGTGGTACGTCATTGCCATCTCACCCTCCg                                                           >  1:40288/1‑143 (MQ=255)                                                                                        agcGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGAATTTCCCGACCAGACCAGAGAACATTTGGTGCTCTGCGCTGACGACGGCCCGGTGGTAAGGCATTGCCATATCACCCTCCGATTaatg                                                    >  2:45348/1‑141 (MQ=255)                                                                                         gcGGTGCGTGGCCAGGGTAGATCCCCCGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGc                                                   <  1:307660/143‑1 (MQ=255)                                                                                             tGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCAGCCTGCGATTAAGGCGGTa                                               >  1:544351/1‑143 (MQ=255)                                                                                              gCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCACGACCAGACCAGAGAACATTCGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAACGCGTTaa                                              >  2:26736/1‑143 (MQ=255)                                                                                              gCGTGGCCAGGGTAGATCCCCAGCTCACCCTCGCTACCCGCTGCCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTaa                                              <  2:351474/143‑1 (MQ=255)                                                                                                   gCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTGATAGCCATACCACCGTACGACTAAGGCGTTAAAGtgt                                         >  2:76812/1‑141 (MQ=255)                                                                                                       gggTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCATAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATGGCCATATCGCCCTCCGATTAAGGCGTTAACGTTTTTTg                                     >  1:722079/1‑143 (MQ=255)                                                                                                        ggTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTgg                                    >  2:156542/1‑143 (MQ=255)                                                                                                         gTAGGTCCCCAGTACCCGTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCGGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGc                                   <  1:24343/143‑1 (MQ=255)                                                                                                                      tCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTTCACACct                      >  1:372028/1‑143 (MQ=255)                                                                                                                          tctCGCTACCCGTTGCCTTGCTTTCCTCGCCCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTACGGCGTTAAAGTTTTTTGGCTTTTTCCACAGcttctt                  <  2:753444/141‑1 (MQ=255)                                                                                                                          cTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAGGGCGTTAAAGTTTTTTGGCTTTTTCCACAGcttctt                  >  1:521495/1‑143 (MQ=255)                                                                                                                           ttCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAGGGCGTTAAAGTTTTTTGGCTTTTTCCCCAGCgtcttc                 >  1:738770/1‑143 (MQ=255)                                                                                                                           ttCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTCTTCCACAGCttcttc                 <  2:723991/143‑1 (MQ=255)                                                                                                                               cTACCCGTTACCTGGATTCTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATg             <  1:38039/143‑1 (MQ=255)                                                                                                                                tACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATgg            >  1:522512/1‑143 (MQ=255)                                                                                                                                 aCCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTGTTCCACAGCTTGTTCGAtcgc           >  1:312038/1‑140 (MQ=255)                                                                                                                                   ccGTTACCTGGATTTTCTCGCCCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAAc         <  1:416352/143‑1 (MQ=255)                                                                                                                                      ttACCTGGATTGTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGa      <  2:770988/143‑1 (MQ=255)                                                                                                                                        aCCCGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTAAGCCGACGACGGCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGAcc    <  1:193464/143‑1 (MQ=255)                                                                                                                                          cTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGAccct  >  1:380411/1‑141 (MQ=255)                                                                                                                                               |                                                                                                                                          TCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCAT  >  NC_000913/3915761‑3916040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.