New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 6423641 (0.870)3 (0.060) 3/278 7.2 6.4% coding (1545/2352 nt) polB DNA polymerase II
?NC_000913 = 64259 47 (1.020)coding (1522/2352 nt) polB DNA polymerase II
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCAGCCAGACAAACGTTGAGTCGGTATCGCCGTAGATAACGTCGTAGCCCTGTGCTTCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGCCAGATGTTAGTCACAATCTCCGGCAGGCAATGTTTTTCTCGC  >  NC_000913/64120‑64401
                                                                                                                                           |                                                                                                                                              
ttCAGCCAGACAAACGTTGAGTCGGTATCGCCGTAGATAACGTCGAAGCCCTGTGCTTCAATCAACGCTCTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGGAGGc                                                                                                                                             >  2:558270/1‑143 (MQ=255)
       agccAAGCGTTGAGTCGGTATCGCCGTAGATAACGTCGTAGCCCTGTGCTTCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGgtggtg                                                                                                                                      <  2:385325/140‑1 (MQ=255)
          cagccGTTGAGTCGGTACTGCCGTAGATGGCGTCGTAGCCCTGTGCTTCAATCAACGCTTTGGTTGGCCGCATGATCTGATGCCCACGCAGGGTGAGCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCg                                                                                                                                   <  2:525089/139‑1 (MQ=255)
           aaaCGTTGAGTCGGTATCGCCGTAGATAACGTCGTAGCCCTGTGCTTCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGa                                                                                                                                  >  2:854309/1‑143 (MQ=255)
             tcGTTTAGTCGGTATCGCCGTTGATATCGTCGTAGCCCTGTGCTTCAATCCACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCggac                                                                                                                                <  2:771342/142‑4 (MQ=255)
                ttggctCGGGAGCGCCGTAGATAACGGCGGAGCCCGGTGCTTCAATCAACGCGTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACg                                                                                                                             <  2:203275/138‑1 (MQ=255)
                ttGAGTCGGTATCGCCGTAGATAACGTCGTAGCCCTGTGCTTCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGCTCGAAGAAGCGGCAAGCGGTGGGGCCGGGCCCg                                                                                                                             >  2:852810/1‑143 (MQ=255)
                   aggcGGTCTCGCCGTGGATAACGTCGTAGCCCGGTGCTTCAATGAACGCTTGGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGACCACGCCa                                                                                                                          <  2:767111/140‑1 (MQ=255)
                        gTATCGCCGTAGATAACGTCGTAGCCCTGTGCTTCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATaaaa                                                                                                                     <  2:191497/143‑1 (MQ=255)
                              ccGTAGATAACGTCGTAGCCCTGTGCTTCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGCATCGACGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCAtt                                                                                                               >  1:418005/1‑143 (MQ=255)
                                    aTAACGTCGTAGCCCTGTGCTTCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCacgat                                                                                                         >  2:370092/1‑143 (MQ=255)
                                         gtcgtAGCCCTGTGCTTCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCCCGCCATAACAGGCAGTCAGGATGAttt                                                                                                    >  1:178224/1‑143 (MQ=255)
                                           cctAGCCCTGTGCTCCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTc                                                                                                  <  1:631359/141‑1 (MQ=255)
                                                  cTGTGCTTCAATCAACGCTTTGGTTTGCAGCATGATCTGATGACCACGCATGGTGACCGACGATGCCAGCCGCGGATCGAAGCAGCAGCAGGCGGTGGTGCCGAGCACACCATAAAAGGCAGGCACGACGATTCTCAGCGcca                                                                                           >  2:470752/1‑142 (MQ=255)
                                                   tgggCTTCAATCAACGCTTTGGTTTGCCGCAGGATCTGATGACCACGCATGGTGATCGACGGTGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTg                                                                                          <  2:45041/140‑1 (MQ=255)
                                                       cTTCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGCTCGAAGAAGCGGCAGGCGGTGGTGCCGCGCACGCCATAAAAGGCATTCATGATGATGTTCAGCGCCTGCGAc                                                                                      >  2:585855/1‑143 (MQ=255)
                                                        ttCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACa                                                                                     >  1:214884/1‑143 (MQ=255)
                                                        ttCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACa                                                                                     >  1:126339/1‑143 (MQ=255)
                                                        ttCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGAGGATGTTCAGCGCCAGCGGCa                                                                                     >  1:211316/1‑143 (MQ=255)
                                                        ttCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCAATAACGTTGTCACTCAGCGCCCGCGAcg                                                                                     >  2:638277/1‑142 (MQ=255)
                                                           aatcgaCGCTTTGGTGTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCg                                                                                  <  2:476185/143‑1 (MQ=255)
                                                              caaCGCTTTGGTTTGCCGCATGATCTGATGAACACGCATGGGGAGCGACGATGCCAGCCGCGGATCGAACAAGCGGCAGGCGGTGGTGCCGAGCACCCCATAAAAGGCATTCATGAAGATTTTCAGCGCCGGCGACAGcagat                                                                               >  2:748828/1‑139 (MQ=255)
                                                                    tttGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTAc                                                                         >  1:561126/1‑143 (MQ=255)
                                                                       ggTGTGCCGCAGGGTCTGATGACCACGCAGGGTGATGGCTGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAGAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCt                                                                      <  2:817482/143‑1 (MQ=255)
                                                                                 ctGATCGGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGc                                                            <  2:393265/142‑1 (MQ=255)
                                                                                     gcTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTTCGACAGGCGTTTGTTCCCCTGGCGTTTGGCTTcc                                                        >  1:308993/2‑142 (MQ=255)
                                                                                           gaCCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCgcgc                                                  >  1:824770/1‑143 (MQ=255)
                                                                                            acgaCGCGTGGTGGTCGACGTGGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGcc                                                 <  2:283256/140‑1 (MQ=255)
                                                                                              cACGGAGGGTGATCGACGATGCCAGCCGCGGAGCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCg                                               <  2:178224/143‑1 (MQ=255)
                                                                                                  cATGGTGATCGAGGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCAGAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGcc                                           <  2:317912/143‑1 (MQ=255)
                                                                                                   aTGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGCCa                                          >  2:510172/1‑143 (MQ=255)
                                                                                                   aTGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGAAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATGTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGCCa                                          <  1:333669/143‑1 (MQ=255)
                                                                                                   aTGGTGAGCGACGAGGCCAGCCGCGGAGCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGCCa                                          <  1:559350/143‑1 (MQ=255)
                                                                                                       tGATCGACGATGCCAGCCGCGGATCGCAGAAGCGGCAGGCGGGGGGGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGGGCCAGATg                                      >  1:400484/1‑143 (MQ=255)
                                                                                                            gacgaTGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGCCAGATGTTCGt                                 >  1:708951/1‑143 (MQ=255)
                                                                                                                ctGCCGGCCGCGGGTCGACGAAGCGGCCGGCGGTGGTGCCGCGCTCGCCATTTGTGGTATTAATGATGTTTTTCAGCGCCTGCGACAGCGGTTTGTTCATCGGTGTTTTTGGTTCATCGCGCTCGTGCCAGATGTTAGTcaca                             <  2:217708/142‑1 (MQ=255)
                                                                                                                aTGCCGGCCGCGGATCGACGAAGCGGCAGGCGGTGGTGCCGAGCGCGCCATAGAAGGCATTCATGATGCTTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTAGCTTCATCGCGCCCGTGCCAGATGTTAGTcaca                             <  2:750539/143‑1 (MQ=255)
                                                                                                                        cgcgGATCGAAGAAGCGGCAGGCGGTGGTGCCGGGCACGCCATACAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGCCAGATGTTAGTCACAATCTCCgg                     <  1:631696/143‑1 (MQ=255)
                                                                                                                        cgcgGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATGCATGATGATTTTCAGCGCCTGCGACAGCGGCTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGCCAGATGTTAGCCACAATCTCCgg                     >  2:116222/1‑143 (MQ=255)
                                                                                                                          cgGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCAAGCCATAAAAGGCATTCAGGATGATTTTCAGCGACTGCGACAGCCGTTGGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGGCAGATGTCCGTCACAAtcacaagcc                   >  2:84471/1‑136 (MQ=255)
                                                                                                                            gATCGAAGAGGCGGGAGGCGGAGGGGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGCCAGATGTTAGTCACAATCTCCggcagg                 <  1:45572/143‑1 (MQ=255)
                                                                                                                              tCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGGTTGGCTTCATCGCGCCCGTGCGAGATGATAGTCACAATCTCCggcagaca               >  2:282618/1‑143 (MQ=255)
                                                                                                                                gaggaagCGGCAGGCGGTGGTGCGGAGCACGCCATAAGAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGGGTTTGGCTTCATCGCGCCCGTGCCAGATGTTAGTCACAATCTCCGGCAGGCAAt             <  2:142896/140‑1 (MQ=255)
                                                                                                                                   gaagCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGCCCGATGTTAGTCACAATCTCCGGCAGGCCATGtt          >  1:12702/1‑143 (MQ=255)
                                                                                                                                      gCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCAGGATGATGTTCAGCGCCTGCGACAGCGGCATCGTACCCTGGCGTTTGGCCTCATCGCGCCCGTGCCACCTGCTCGGCACAATCGCCGGCACCCAATgccttt       >  2:563141/1‑138 (MQ=255)
                                                                                                                                        ggCAGGCGGGGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTGTGTTACCCGGGCGTTTGGCTTCATCGCGCCCGTGCCAGATGTTAGTCACAATCTCCGGCAGGCAATGTTTTtct     <  1:732464/143‑1 (MQ=255)
                                                                                                                                         gCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGACTGCGACAGCAGAATGTTCAGCTTCCGCTTGGCTTCATCCCGCCCGTGCCAGATGTCACCCACATTCTCCGGCAGGCAATATATTtctc    >  1:396436/1‑143 (MQ=255)
                                                                                                                                           aGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGCCAGATGTTAGTCACAATCTCCGGCAGGCAATGTTTTTCTcgc  <  1:854309/143‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                              
TTCAGCCAGACAAACGTTGAGTCGGTATCGCCGTAGATAACGTCGTAGCCCTGTGCTTCAATCAACGCTTTGGTTTGCCGCATGATCTGATGACCACGCATGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGCCAGATGTTAGTCACAATCTCCGGCAGGCAATGTTTTTCTCGC  >  NC_000913/64120‑64401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.