Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	458,790	IS186 (–) +6 bp :: Δ1 bp	intergenic (+90/‑93)	clpX → / → lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	458790 =	0 (0.000)	51 (1.100)	42/278	0.1	100%	intergenic (+90/‑98)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	608008 =	NA (NA)					noncoding (2/1345 nt)	IS186	repeat region
*	?	NC_000913	= 458795	0 (0.000)	42 (0.910)	33/276	0.4	100%	intergenic (+95/‑93)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	= 609351	NA (NA)					noncoding (1345/1345 nt)	IS186	repeat region

ATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/607866‑608148                                                                                                                                               |                                                                                                                                             aTAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATc                                                                                                                                              <  2:590130/143‑1 (MQ=255) aTAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATc                                                                                                                                              >  1:349121/1‑143 (MQ=255)   aGTGCTGTGTTTAACGGTGCTGGGATTTACGGGTCTGGGCTGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGGAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATccc                                                                                                                                            <  2:441184/143‑1 (MQ=255)   aGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATccc                                                                                                                                            <  1:17478/143‑1 (MQ=255)         gtgtTTAACGGTGCTGGGATCTACGCTTCTGGCCGGAGCCTCGCTGCGTGAGTTTACGGTGCCGGAACGTGATATTGCGTTTAAGGCTGTTCTCCCTTCCGAACCGCAGGAGTAGACGGCGTGCGGGGAGTCATccccgcagc                                                                                                                                      >  2:229984/1‑137 (MQ=255)             ttAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGCAGGAACGTAATATTGCGTTTAAGGCTCTTCTCGCTTACGAACCGAAGAAATAACAGTAGAGCGGGGAGTAATCCCATAAGAGCTa                                                                                                                                  >  1:329428/1‑143 (MQ=255)                  gggggtGGGATTTACGGTTCTGGTCGGATACTCGC‑‑TGTGAGTTTACGGTGAAGGACCGTAATATTGAGTGTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGGTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAg                                                                                                                           <  2:566858/138‑1 (MQ=255)                   gTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGGTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTaa                                                                                                                            <  1:465195/143‑1 (MQ=255)                     gCTGGGATGTGCGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAgg                                                                                                                          <  2:528340/143‑1 (MQ=255)                      cTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGGTAACTTAAggg                                                                                                                         >  1:615450/1‑143 (MQ=255)                       tGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTGTGGTTTAGGAACCGAAAAACTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGt                                                                                                                        >  1:851459/1‑143 (MQ=255)                       tGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGt                                                                                                                        >  1:743845/1‑143 (MQ=255)                              tACGCTTCTGGTCGGAGACTCGCTGTGTGAGATTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGGGTGATCCCTTTCGCGCTGATTGAAGGGTTGTGGTa                                                                                                                 >  1:170885/1‑143 (MQ=255)                               aggctgctGGTCGGAGACTCGCCGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGCAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATCAGCGCTAACTTAAGGGTTGTGGTAt                                                                                                                <  1:133035/141‑1 (MQ=255)                                    tCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc                                                                                                           >  1:150798/1‑143 (MQ=255)                                    gcTGGCCGGAGACTCGCTGTGGGAGTGTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTGCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc                                                                                                           <  1:143829/142‑1 (MQ=255)                                      tGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGCGTGGTCCCATAAGAGCTAACGTAAGGGTTGTGGTATTACGcca                                                                                                         >  1:763253/1‑142 (MQ=255)                                       gatCGGAGCCTCGGTGGGTGAGTTTCCGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg                                                                                                        <  2:681299/141‑1 (MQ=255)                                         tCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTCat                                                                                                      >  1:841834/1‑143 (MQ=255)                                              ggcTCGCTGTGCGAGTGTACGGTGAAGGAACGGAATATTGAGTTTAAGGCTGTGCTCGCTTACGAACCGAAGAAGTGGGCGTGGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt                                                                                                 <  1:672003/141‑1 (MQ=37)                                                 tCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTATGCCTGATATGATTTa                                                                                              >  1:761545/1‑143 (MQ=255)                                                  cGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa                                                                                             <  1:88716/143‑1 (MQ=255)                                                       tgtgAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAACCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGCTGTGGTATTACGCCAGATATGATTTAACGTGc                                                                                        >  2:73729/1‑143 (MQ=255)                                                           aGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGAAAAATAATGTGTTGTGGTATTACGCCTGATAGGATTTAACGGGGCGAt                                                                                    >  2:604418/1‑143 (MQ=38)                                                             tttACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGGTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAGGGGTTGTGGTATTAAGACTGATATGATTTAAGGTGCCGGTGa                                                                                  >  1:70587/1‑143 (MQ=38)                                                              aaagtctGAATGCACGTAATATTGAGTTTAAGGCTGTTCGCGCTTACGAACCGAAAAAGTAGCCGTTGTGAGGGAAGTAATCCCATAAGCGCTAACTTAAGGGTTGTAGTATTACGCCTGATATGATTTAACGTGCCTATGaa                                                                                 <  2:371563/137‑1 (MQ=25)                                                                aCGGTGAAGGAACGGAAAATCGGGGGTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt                                                                               <  1:531136/143‑1 (MQ=25)                                                                   gTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGAGAATAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACACAAGATATAAGTTAACCTGCCGATGAATGAca                                                                            >  1:153204/1‑142 (MQ=37)                                                                    tGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc                                                                           <  1:419151/143‑1 (MQ=255)                                                                     gAAGGAACGTAATATTGAGTTTAAGGCTGTTCCCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct                                                                          <  1:261221/143‑1 (MQ=255)                                                                        cgAACGTAATATTGAGTTTAAGGCTGTTCTCGCTGACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATGAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAc                                                                       <  2:396195/142‑1 (MQ=255)                                                                          aaCGTGATATTGAGTCTAGGGCTGGGCTCGCTTACGTGCGGATGAAGCAGCCGTTGTGCGGGGAGTAATCACATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGa                                                                     <  2:604660/143‑1 (MQ=18)                                                                              tAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAc                                                                 >  1:22395/1‑143 (MQ=255)                                                                                 tatTGAGATTAAGGCGGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCGATAAGAGATAACATGAGGGTAGGGGTATGACGCCTGAAGTGATTTAACGTGGCGAAGAATGAGTCGAACGATAACTgg                                                              >  2:31315/1‑143 (MQ=255)                                                                                      aGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGc                                                         >  1:46955/1‑143 (MQ=255)                                                                                       gTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCa                                                        >  1:596434/1‑143 (MQ=255)                                                                                        tttAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCaa                                                       >  2:558537/1‑143 (MQ=255)                                                                                          tAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGACGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAAtt                                                     <  1:809818/143‑1 (MQ=255)                                                                                            aGGCTGTTCTCGCTTACGCACCGAAGAAGTGGCCGTCGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGTATTACTCTCACGATAACTGGTCAGCAATTCt                                                   <  1:147336/143‑1 (MQ=255)                                                                                              gCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa                                                                                                       >  2:636313/1‑89 (MQ=255)                                                                                              gCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa                                                                                                       <  1:636313/89‑1 (MQ=255)                                                                                              gCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                                 >  1:463097/1‑143 (MQ=255)                                                                                              gCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGCTGTGCGGGGAGCAATCCCACACGCGCTCACCGGAGGGCTGTGGCATTACGCCCGATCTGATCTAACGCGCCGACGCATTACCCCCACGATACCTGGCCAGCactccggc                                                 >  2:103844/1‑136 (MQ=255)                                                                                                 gTTCTCGCTTACGAACCGATGGAGTAGCTGTTGTGCGGGGAGTAATTCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAACTACTCTCACGATAACTGGTCAGCAATTCTGGccc                                              <  2:187972/143‑1 (MQ=18)                                                                                                             gAACCGAAGAAGTAGCCGTTGTGAGGGGAGTAATCCCATACGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGc                                  <  2:615450/143‑1 (MQ=255)                                                                                                                  gaagaaGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGATGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCAGATTGGTAAGCCCgaa                             >  1:82201/1‑143 (MQ=255)                                                                                                                         tAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTGAGCATGTCTGGCCCATATTGGTAAGCCCGAAGAACTgg                      <  2:418165/143‑1 (MQ=255)                                                                                                                         tAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGCATTACGCCTGATATGACTTAACGTGCCGATGAATTACTCCCACGATAACTGGTCAGCAATTCTGGCCCATACCCGTAAGCCCCAAGCACCgg                      >  2:363312/1‑143 (MQ=14)                                                                                                                             cGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATAc                  >  1:682054/1‑143 (MQ=255)                                                                                                                                  tgCGAGGAGAAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCgg             <  1:109811/143‑1 (MQ=18)                                                                                                                                         aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTaa      >  1:735206/1‑143 (MQ=33)                                                                                                                                         aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGCAAGCCCGAAGATCTGGATACTTCGGCACGTaa      <  2:446254/143‑1 (MQ=18)                                                                                                                                             aTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGcc  <  1:12000/143‑1 (MQ=11)                                                                                                                                               |                                                                                                                                             ATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/607866‑608148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.