Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 39 [0] [0] 40 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)37 (0.840) 31/264 0.4 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

AAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTT  >  NC_000913/3815805‑3816083
                                                                                                                                        |                                                                                                                                              
gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcccc                                                                                                                                          >  1:801842‑M2/137‑143 (MQ=255)
 cttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgcccccttctgcCGTCCCCt                                                                                                                                         >  1:479183‑M2/136‑143 (MQ=255)
    gctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggccactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCa                                                                                                                                      >  2:179432‑M2/133‑143 (MQ=255)
            caactgtaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatg                                                                                                                              >  2:148460‑M2/125‑143 (MQ=255)
            caaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatg                                                                                                                              >  1:212036‑M2/125‑143 (MQ=255)
               attcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgatg                                                                                                                           >  2:392147‑M2/122‑143 (MQ=255)
                          tggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCACTGATGCGCCCGTCTTc                                                                                                                >  1:785981‑M2/111‑143 (MQ=255)
                           ggcgctgatctggtttcatgccttcgcccctccgcttactcttctacagacgaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                               <  2:538983‑M2/34‑1 (MQ=255)
                           ggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                               <  1:245648‑M2/34‑1 (MQ=255)
                             cgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                                                             <  1:561828‑M2/36‑1 (MQ=255)
                                         ttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGtt                                                                                                 <  2:316564‑M2/48‑1 (MQ=255)
                                                      tcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTctct                                                                                    >  1:57512‑M2/83‑143 (MQ=255)
                                                       cctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTg                                                                                   >  1:174695‑M2/82‑143 (MQ=255)
                                                            tcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCTTTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                              <  2:703710‑M2/67‑1 (MQ=255)
                                                            tcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                              >  1:129265‑M2/77‑143 (MQ=255)
                                                             cttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTAGTATCGGTCTCTGCGGCag                                                                             >  2:133783‑M2/76‑143 (MQ=255)
                                                              ttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                            >  1:707563‑M2/75‑143 (MQ=255)
                                                                      ctacagacaaaacaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCaa                                                                    <  2:819348‑M2/77‑1 (MQ=255)
                                                                        acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg                                                                  >  1:688422‑M2/65‑143 (MQ=255)
                                                                        acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCCCTACGGCAGAGTCTTCAACg                                                                  >  2:528983‑M2/65‑143 (MQ=255)
                                                                             caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTc                                                             >  1:495392‑M2/60‑143 (MQ=255)
                                                                             caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCACCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCCCTACGTTCATGTCGGTCACTGCGGCGGAGCCTTCGACGTAGTc                                                             >  1:221069‑M2/60‑143 (MQ=255)
                                                                                  ttaaggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCCGAGTCTTCAACGTATTCCAGAt                                                        >  1:455674‑M2/55‑143 (MQ=255)
                                                                                         gactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCACTGCACTTCAATGATGCGCCCGTCTTCAGTGATCACTAAGATCATGTCGGTCTCTGCGGCAGAGTCTTCAAAGTATTCCAGATCccaaga                                                 >  2:100175‑M2/48‑141 (MQ=255)
                                                                                            tcatcagtcgccttaaaaatcagtttgccagcgccgccttgtgcCGTCGCCTGGACTTCAATGATGCGCCAGACTACGGTCATCCCTACGTTCATGGCGGACTCTGCGGGAGCGTCTGCAACGTATTCCAGGGCGCAAACCGc                                              >  1:177726‑M2/45‑143 (MQ=255)
                                                                                              atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCtt                                            >  1:680811‑M2/43‑143 (MQ=255)
                                                                                              atcagcctccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCtt                                            <  1:833332‑M2/101‑1 (MQ=255)
                                                                                                 agtcgccttaaaactcagtctgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGc                                         <  1:30477‑M2/104‑1 (MQ=255)
                                                                                                     gccttaaaaatcattttgccagcgccgctttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGtt                                     <  2:38552‑M2/108‑1 (MQ=255)
                                                                                                      ccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTc                                    >  1:727125‑M2/35‑143 (MQ=255)
                                                                                                       cttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGGTACTGTCGGTCTCTCCGGCAGCGACGTCAACGCATTCCAGATCGCCAACCGCCTCCCCGCTca                                   >  2:697893‑M2/34‑143 (MQ=255)
                                                                                                             attcggtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTc                             <  2:243536‑M2/116‑1 (MQ=255)
                                                                                                             aatcagtttgccagcgccgccttctgcCGTCCCCTACACTGCAATGATGCGCCCGTCTTCGGTCATCACTACGCTCATGCCGGCCTCTGCAGCAGAGTCTTCAACGTATTCCAGATCCCAAACAGCTTCGCCGTTCCCAGTTc                             >  2:344814‑M2/28‑143 (MQ=255)
                                                                                                                 agtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGACGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAc                         <  1:231081‑M2/120‑1 (MQ=255)
                                                                                                                 actttgcaggcgccgccgtctgcGGCCCCCTGCCCTTAACTTGTGCGCCCGTCTTCGGTCATCACTACGTTCAGGTCGGCCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAc                         <  2:810230‑M2/120‑1 (MQ=255)
                                                                                                                         agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCACGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAGAGAAACTg                 >  1:440475‑M2/16‑143 (MQ=255)
                                                                                                                            gccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCgg              >  1:128979‑M2/13‑143 (MQ=255)
                                                                                                                                     tgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTCTTCCAGATCGCAAACCGCTTAGCCCTTCACAATGCCTACCGAACCGCCCGCTACCATcc     >  2:490960‑M2/4‑143 (MQ=255)
                                                                                                                                       cCGTCCCCTGCACTTCAATGATGCGCCCGTGTTCGGTCATCACTCCGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCt   <  2:311302‑M2/142‑1 (MQ=255)
                                                                                                                                        cGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCtt  <  1:696939/143‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                              
AAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTT  >  NC_000913/3815805‑3816083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: