New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3592584 =NA (NA)3 (0.040) 3/396 NT 4.1% noncoding (21/99 nt) RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 3592648 = 71 (0.940)noncoding (85/99 nt) RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Frequency below/above cutoff threshold.

AAAGCTGGCGGATCGCGGCTACGTGCTGGAAAACGGCCATGTAGTGCTTTCCGATACTGGTGATGCGCTGCTGGCGAATGAAGCGGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAGGGAGTCAAAAGACTCCTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3592835‑3592584
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggcctgataagCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCC  >  NC_000913/3592648‑3592878
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
AAAGCTGGCGGATCGCGGCTACGTGCTGGAAAACGGCCATGTAGTGCTTTCCGATACTGGTGATGCGCTGCTGGCGAATGAAGCGGTGAGAAGTGCATATTTAGGCGGGGAATAACACGTTGATTGATAGGGAGTCAAAAGACTCCTTTGAGACCGGTGCCAAATGTAAAATTTCCCGGTGCGCGGCGCTTTTCAGGCCTACCGGGGGGGTGGCAAAATGTTGAATTTGAACATTCTTG                                                                                                                                                                                                                                                      >  2:926383/1‑239
     TGGTGGATCGCGGCTACGTGCTGGAAAACGGCCATGGAGTGCTTTCCGATACTGGTGATGCGCTGCTGGCGAATGAAGCGGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAGGGAGTCAAAAGACTCCTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAG                                                                                                                                                                                                                                                   <  1:762254/237‑1
                                                                     ggTGGCGAATGAAGGGGTGAGAAGTGCGTATTTAGGCGGGTAATAGCCCGGTGATTGATAGGGAGTCAAAAGACTCCTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACT                                                                                                                                                                                 <  1:750169/237‑1
                                                                                                                             GATAGGGAGTCAAAAGACTCCTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACC                                                                                                                                                                                                        >  1:92398/1‑160
                                                                                                                             GATAGGGAGTCAAAAGACTCCTTTGAGACAGGTGACAAAGGTAAAATTGCCTGATGCGCTGCGCTTATCAGGACTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACC                                                                                                                                                                                                        <  2:92398/160‑1
                                                                                                                                                                                                                                               TAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGCAAGATAG        >  1:654925/1‑238
                                                                                                                                                                                                                                               TAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATA         >  1:495658/1‑237
                                                                                                                                                                                                                                                 GGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGAAAGCACTACTTGGCCGTTTTCCAGCCCGTACCCCCGTCCCGCCAGCTTTATGCCCCGGTTGGCCTTCTCCCCGCCGGGAAAaccacca      >  2:360350/1‑231
                                                                                                                                                                                                                                                    CTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCC  <  1:640365/239‑1
                                                                                                                                                                                                                                                     TGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGCCATCC  >  1:2626/1‑238
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
AAAGCTGGCGGATCGCGGCTACGTGCTGGAAAACGGCCATGTAGTGCTTTCCGATACTGGTGATGCGCTGCTGGCGAATGAAGCGGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAGGGAGTCAAAAGACTCCTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3592835‑3592584
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggcctgataagCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCC  >  NC_000913/3592648‑3592878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.