Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,720,129 C→T 13.4% S85F (TCT→TTT)  slyB → outer membrane lipoprotein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,720,1290CT13.4% 191.4 / 4.1 77S85F (TCT→TTT) slyBouter membrane lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (23/43);  new base T (9/2);  total (32/45)
Fisher's exact test for biased strand distribution p-value = 6.13e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGACCGTTTCTCCGCGCTAAATAAGTTTGCGTGTGGTC  >  NC_000913/1719892‑1720361
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                            
tGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTtct                                                                                                                                                                                                                                             <  1:809502/239‑1 (MQ=255)
       ttCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGGGCAATTGGCGGTGCTGTTCTTGGTGGGTTTCTTGGGGATACCGTTGGGGGGGGGACCCGGGGGTCTTTGGCt                                                                                                                                                                                                                                      >  1:954669/1‑238 (MQ=255)
        tCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTAGGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGAGGCATTGGCGTGGCGTTTCTTGGGGGGTTCCCTGGGCAAGATGGTGGTGCGGGAAACGGGGGGGTTCTGGCtgt                                                                                                                                                                                                                                    >  2:861319/1‑237 (MQ=255)
            tGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTTGCGGTGCTGTTCTTGGTGGGTTCCTTGGGGATACTTTTGGTGGGGGAACCGGGCGTTTTTTGGGTACTgcc                                                                                                                                                                                                                                >  1:1043890/1‑238 (MQ=255)
            tGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTTGGGGGTTCCTGGGGGATCCTGTTTGTGGGGGAAACGGGCGGTTTCTCGATACtcg                                                                                                                                                                                                                                 >  1:50038/1‑236 (MQ=255)
                 ggTTTGTTTTTTGTCGGTTTTGTTAATAACGACACCCTGTCAGGGGATGTTGATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAgg                                                                                                                                                                                                                           <  2:878488/239‑1 (MQ=255)
                    ctgtctCTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGgcg                                                                                                                                                                                                                         <  1:592683/238‑1 (MQ=255)
                       tctcTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGGGGTTTCCTGGGGGATACTTTTGGGGGCGGAACCGGGCGGTTCCTGGCTACTgcacacgcggcctt                                                                                                                                                                                                                     >  1:913967/1‑228 (MQ=255)
                            tGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGGCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGGGGTGATTCCAACGTTATGCGTGCAATTGTCGGTGTGCGTCTTGGGGGGTTCCCCGGGAACTTTGTGGGTGGCGGGGCAGGGGGGGTTCTTGCCTCTGCAGCAggaggcgggggag                                                                                                                                                                                                                >  2:22662/1‑228 (MQ=255)
                             gTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTTGTGGGTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTTTCTGGCTCCTTCAGCAGGCGCttgttcagg                                                                                                                                                                                                               >  1:646266/1‑231 (MQ=255)
                                ggTTTTGTTAATAGAGCACCCCTGTGAGGGGTTTTTTATACCGGTTCTGAAGCGAAAAAAGTACCGAATGTCAGTATGGGCACCATCGTTAACGGACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTGGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTgg                                                                                                                                                                                                           <  2:247312/239‑1 (MQ=255)
                                    tttttAAAAACGTAACCCTTTAGGGGGATTTTTAGACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTa                                                                                                                                                                                                       <  2:954669/236‑1 (MQ=255)
                                     tgtTAATAACGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGAGCTGTTCTTGGGGGTTTGCAGGGGGATACGTGTGGCGGCGGAACCGGGCGTTTTCTGGGTACTGTACCAGGGCCTGTTGCAGGTGGCGTAg                                                                                                                                                                                                      >  1:513972/1‑239 (MQ=255)
                                           taaCGCCACCCTTTCAGGGGATGTTTATACGCGTTCGGAAGCGAAACAAGTACAGAATGTCAGCGATGGCACCAGCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTc                                                                                                                                                                                                <  2:666446/239‑1 (MQ=255)
                                           taaCGACCCCCTTTCAGGGGATGTTTATACCGTTTCTGAAGTGAAACAAGGACAGAATGTCAGCTATGGCCCCAGCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTc                                                                                                                                                                                                <  2:512649/239‑1 (MQ=255)
                                           taaCGACCCCCGTGCAGGGGTTGTTTATACCGCTTCTGAAGAGAAACAATTACAGAATGGCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTGAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTc                                                                                                                                                                                                <  2:526224/239‑1 (MQ=255)
                                           taaCGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTc                                                                                                                                                                                                <  1:439457/239‑1 (MQ=255)
                                           taaCGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTc                                                                                                                                                                                                <  1:22662/239‑1 (MQ=255)
                                           taaCGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTc                                                                                                                                                                                                <  1:745010/239‑1 (MQ=255)
                                           taaCGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTc                                                                                                                                                                                                <  1:291444/239‑1 (MQ=255)
                                           taaCGACACCCTGGCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGGATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTc                                                                                                                                                                                                <  1:860160/239‑1 (MQ=255)
                                           atacggcccccTGTCAGGGGATTTTTATACCGGTTCTGAAGCGAAACAAGTACAGAATGGCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTc                                                                                                                                                                                                <  1:457160/231‑1 (MQ=255)
                                                    ccTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGGGGGTTCCTTGGGACACCTGTTTGGGGGGGAGCACGGGGGTCTTTGGCCCACGGCACAAGGGGTTTTGCAGGTGGCGGAGCTGGGAAggggggaa                                                                                                                                                                                       >  2:371487/1‑234 (MQ=255)
                                                      tGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGGGGCGGAACCGGGCGTTCTCTGGGCACTGCAGAAGGCGCTCTTTCAGGGGGGGTGGCGGGGCCGGGGGGACag                                                                                                                                                                                     >  1:626105/1‑239 (MQ=255)
                                                             ggATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCa                                                                                                                                                                               <  1:32537/238‑1 (MQ=255)
                                                                          ttttCTTAAGGTAAACAATTAAAGAATGTGAGCTATGGGACCATCGTTAACGGACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCa                                                                                                                                                                 <  2:453071/237‑1 (MQ=255)
                                                                                      aaaCAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGGTGTTCTTGGTGGTTTCCTTGGGAATACTGTTGGTGGCGGAACCTGGCGTTCTCTGGCTACTGTCGCAGGCCGTGTTGCCGGGAGCGTTGGCGGTCAGGTGCTACCGAGCGCCATGAACAAACCGCCggggggtga                                                                                                                                                        >  1:856441/1‑230 (MQ=255)
                                                                                                  aaTGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTc                                                                                                                                                                                                <  1:238908/184‑1 (MQ=255)
                                                                                                   aTGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTa                                                                                                                                         <  1:767005/237‑1 (MQ=255)
                                                                                                    tGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGGGCTGGTCTTGGTGGTTTCCTGGGGAATACTGTTTGTGGCGGCACCGGGCGGTCTCTGGCCACTGCAGCAGGCGCTGGTGCCGGGGGGGTAGGCGGTGCGGGGGCAAATGGGGCAATGAAACAAAAACAGGGGGGCGAGCTGGGAAATCGGaaaa                                                                                                                                      >  2:251079/1‑238 (MQ=255)
                                                                                                       cAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGAc                                                                                                                                    <  1:623011/238‑1 (MQ=255)
                                                                                                       cAGCTATGGCACCATCGTTAACGGACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGAc                                                                                                                                    <  1:847563/238‑1 (MQ=255)
                                                                                                            aTGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGGGGTTTCCTGGGGGATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAAGGGCTGTTGCAGGGGGCGGAGCCGGTCAGGGCGGACAGAGTGCAATGAACAAAACGCAGGGTGTCggg                                                                                                                                                      >  1:646770/1‑213 (MQ=255)
                                                                                                                     aTCGTTAACGTACGGCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAGTTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACcat                                                                                                                     <  1:476211/239‑1 (MQ=255)
                                                                                                                       cGTTAACGTACGGCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACcatca                                                                                                                   <  1:548170/239‑1 (MQ=255)
                                                                                                                           aaCGTACGTCCGGTACAGATTCAGGGCGGTGATTATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCAtggt                                                                                                               <  1:861319/239‑1 (MQ=255)
                                                                                                                           aaCGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTTATACCATCAtggt                                                                                                               <  1:941573/239‑1 (MQ=255)
                                                                                                                                acgtCCGGTACTGATTCAGGGCTGTGATGGTTTCAACGTTATGTGTGCAATTGGCGGGTCTGGTCTTGGTGGTTGCCGGGGGAATACTGGTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTAc                                                                                                          <  2:271625/239‑1 (MQ=255)
                                                                                                                                        tACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACaga                                                                                                                                                                                    <  2:519174/159‑1 (MQ=255)
                                                                                                                                        tACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGGGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACaga                                                                                                                                                                                    >  1:519174/1‑159 (MQ=255)
                                                                                                                                              tgcAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCa                                                                                              <  1:42925/235‑1 (MQ=255)
                                                                                                                                                       gTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCCGGTCTTGGTGGTTTCCTTGGGGATACTTCTTGGGGCGGAACCGGGGGTTTTCTGGTCACTGCAGCAGACGCCGGTGGAGGGGGCGGAACCGGGCAGGGCGTAAAGGGTGCAAAGAACAACACGCCGGGGGTCGGCGTGGAAAATCCTCAAAACGCAGGTGATACCACCGTGGGGGGAAAGAAACAAAGCAacacaccagtc                                                                                   >  2:1005567/1‑232 (MQ=255)
                                                                                                                                                        tgatgaTTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAgg                                                                                                                                                                                             <  1:466894/134‑1 (MQ=255)
                                                                                                                                                                  atgtttttCGTTGCAATTGGCGGTGCTGTTTTTGGTGGTTTCCTGGGGAATGCTGTTGGTGGGGGAACCGGGCGTTCTCGGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCa                                                                        <  2:646266/232‑1 (MQ=255)
                                                                                                                                                                  aaCGTTTTCGGTTGGATTGTCGTTGGTGTTCTGGGTGGTTTCCTAGGGAAGAGTTTTTGTGGATGAACCGGGACTTCTCTGGTTTATTGAGCAGGTCCTGTGGCAGGTGGCGTAGCTAGTGAGGCAGGACAGAGTGCAATGAAAAAAGCTCAGGGTGTCAAGCTGGCAATTCGTACAGCCGATGGTAATCCCAACATGGAGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCa                                                                        <  2:310645/239‑1 (MQ=255)
                                                                                                                                                                  aaCGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATAATGTTGGTGGCGGGACCGGGCGTTTTCTGGCGCCTGCAGCAGGCGCTGGTGCAGGGGGCGGAGCTGGTTAGGGGGTACagag                                                                                                                                                                                   >  2:466894/1‑134 (MQ=255)
                                                                                                                                                                        aTCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGGAACGGGCGGTCTCTGGCTACTGCCGCAGGCGCTGTTTCAGGGGGCGTAGCTGGTCAGGGCGGACAGAGTGTAATGAAAAAAAACCAGGGGGTGCGACTTGAAAGTCGTAAAGACGATGGGAATAACCCTCTGGTGGCACAGAAAGAAGGGACAACCCCTTTTTCTCCCCGCCCACggtg                                                                  >  2:961763/1‑236 (MQ=255)
                                                                                                                                                                                       cgtgttttttttGGTGTTTTCCGTGGTAATCCTGTTGGTTGCGGTAGTGGGGGTGCCCTGGTCACAGAATCAGGGGCTGTTGAAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTTCAAGGAACAAAACGCCGGGTGTCGAGCTGGAAATTCGTAAAGACGTTGTTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCGCTCCGGGCCAACGTGTAGTACTGGCCAGCaa                                                   <  2:513972/229‑1 (MQ=255)
                                                                                                                                                                                        gttcTGTTCTTGGTGGTTTCCTGGGGAATTCTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCaa                                                   <  1:633394/235‑1 (MQ=255)
                                                                                                                                                                                         tGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTa                                                              <  1:410487/226‑1 (MQ=255)
                                                                                                                                                                                           cTGTTCTTGGTGGTTTCCTGGGGAATGCTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGGTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGc                                               <  1:371487/239‑1 (MQ=255)
                                                                                                                                                                                             gTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAg                                             <  1:868997/239‑1 (MQ=255)
                                                                                                                                                                                                    ggtggtTTCCTGGGGAATTCTGTTGGTGGCGGAACCGGGCGTTCGCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGt                                       <  1:453960/239‑1 (MQ=255)
                                                                                                                                                                                                    ggtggtTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTTTCCGGGCCAACGTGTCGTACTGGCCCGCAATGGCAGTCAggg                                       >  1:710858/1‑238 (MQ=255)
                                                                                                                                                                                                    ggtggtTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGAAGCTGGTCAGAGCGTACAGAGGGCAATGAACAAAACGCAGGGTGTCGAGCTGGCAATTCGTACAGACGATGGTAATACCATCATGGTGGGACCGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACCTTTCGCCCTGCCCCCCAAAGGCAGACAggg                                       >  2:757288/1‑238 (MQ=255)
                                                                                                                                                                                                         tttCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGGGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTCCAGAAAAAAGGCAACACTCGTTTTTCTCCGGGCCAACGGGGCGAACTGGCCCGCAAAAGCAGCCAGGGGGCCg                                  >  2:1059978/1‑239 (MQ=255)
                                                                                                                                                                                                         tttCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACACGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGCCCg                                  >  1:394694/1‑239 (MQ=255)
                                                                                                                                                                                                         tttCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAAGGGCAGTCGGGTGACCg                                  >  1:565817/1‑239 (MQ=255)
                                                                                                                                                                                                              tGGGGAATTCTTTTGGGGCGGGAACCGGGCGTTCTCTGGCTACTGAGGGGGGCCTTTTTGCAGGGGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGACCGTTtct                             <  2:1089938/239‑1 (MQ=255)
                                                                                                                                                                                                               ggggAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTa                                                              <  2:762227/205‑1 (MQ=255)
                                                                                                                                                                                                               ggggAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTa                                                              >  1:762227/1‑205 (MQ=255)
                                                                                                                                                                                                                gggAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTAAGGGGACCGTTtctc                            >  1:559404/1‑238 (MQ=255)
                                                                                                                                                                                                                  gtatgcTGTTGGTGGGGGATCCGGGCTTTTTCTGTTTTTTGCAGCAGGCGGGGTTGGAGGTGGGTTAGCTGGTCAGGGCGTACAGAGTGAAATGAACAAAGCGGAGGGTCTCGATCTGGAAATTCGTAAAGACGATGGTAATCCCATCATGGTGGTACAGAACCAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGACCGTTTCTCcg                          <  2:498555/233‑1 (MQ=255)
                                                                                                                                                                                                                    gttcttttggttggGGAACCGGGCGTTTTCGTGCTCTTGCAGCGGGGGCTGTTGGAGGTGGCGTAGCTGGTCATGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATGCCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGACCGTTTCTCcgcg                        <  2:1048438/232‑1 (MQ=255)
                                                                                                                                                                                                                    attcTGGTGGTGGCGGAACCGGGCGTTCTTAGGCTTCTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGACCGTTTCTCcgcg                        <  1:1030386/235‑1 (MQ=255)
                                                                                                                                                                                                                     tACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGGGTCGTCCTGGCCAGCAATGGCAGTCAGGGGACCGTTTCTCCGCGCt                      >  1:438345/1‑239 (MQ=255)
                                                                                                                                                                                                                     tACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACCCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGGGACCGTTTCTTCgcgcg                      >  1:146795/1‑238 (MQ=255)
                                                                                                                                                                                                                     tACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGAGGGTAATACCATCATGGGGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGAAATGGCAGCCAGGGGACCGTTTTCCCCCGCt                      >  2:674938/1‑239 (MQ=255)
                                                                                                                                                                                                                        tGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGGGTCGGGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGAGGTCCAGAAACAAGGCAACACTCGTTTCTATCCGGGCCAACGGGCCGTACTGGACACCAAAGCCAATCAGGCGACCGTTTCCCcggcccaaa                   >  2:132268/1‑232 (MQ=255)
                                                                                                                                                                                                                          ttGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTATCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGACCGTTTTTCCCCCCTAAATa                 >  1:892354/1‑239 (MQ=255)
                                                                                                                                                                                                                            ggtggCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCa                                                                        >  2:424613/1‑182 (MQ=255)
                                                                                                                                                                                                                            ggtggCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCa                                                                        <  1:424613/182‑1 (MQ=255)
                                                                                                                                                                                                                               ggCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACGGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGCCCGTTTCTCCGCGCTAAATAAGttt            >  1:220661/1‑239 (MQ=255)
                                                                                                                                                                                                                               ggCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGGCGTACTGGCCAGCAAAGGCCGTCAGGTGCCCGTTTCTCCCCCCTAAATaaactt            >  2:727113/1‑235 (MQ=255)
                                                                                                                                                                                                                                      ccGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATTATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGACCGTTTCTCCGCGCTAAATAAGTTTGCgtgt      <  1:562905/238‑1 (MQ=255)
                                                                                                                                                                                                                                      ccGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGACCGTTTCTCCGCGCTAAATAAGTTTGCgtgt      <  1:251079/238‑1 (MQ=255)
                                                                                                                                                                                                                                      ccGGGCCTTCTCTTGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGACAGGGCTTACAGAATGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGACCGTTTCTCCGCGCTAAATAAGTTTGCgtgt      <  1:866512/238‑1 (MQ=255)
                                                                                                                                                                                                                                          gCGGTCCCTGGGTACTGCAGGAGGAAGTTTTGCAGGGTGGCTCGGTGGTTAGGGCGTTAAGGTTGCAATGAACAAAGCGCAGGGTGTCGAGCTGGAAATTCGTAAATGCGATGGTAATGCCTTCATGGTGGTACAGAATCAAGGCAACACTCGTTTCTCGCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGACCGTTTCTCCGCGCTAAATAAGTTTGCGTGTGGTc  <  2:856441/238‑1 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                            
TGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGACCGTTTCTCCGCGCTAAATAAGTTTGCGTGTGGTC  >  NC_000913/1719892‑1720361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: