| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,749,743 | A→G | 18.2% | E171G (GAG→GGG) | sgbU → | putative L‑xylulose 5‑phosphate 3‑epimerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,749,743 | 0 | A | G | 18.2% | 143.9 / 3.0 | 64 | E171G (GAG→GGG) | sgbU | putative L‑xylulose 5‑phosphate 3‑epimerase |
| Reads supporting (aligned to +/- strand): ref base A (25/25); new base G (5/8); total (30/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCGTTGGCATCTTCAAAACGCTGCATAAACTGAACTATC > NC_000913/3749511‑3749976 | ttaagagccaggAGTTAAGCTATTCGCCTGGCTCCCGTTCTCGGCATTCGCCCCACCCAGCCTGCAGGTTAGGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCt < 2:504293/228‑1 (MQ=255)cgGGAAATCATGGGTAAAGCGTTTCGCCTGGCGTGCGATCTCGGCATTCGCACCCTCCAGGTGGCAGGTAATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCt < 2:956018/239‑1 (MQ=255) tCATGAGTAAAGCGATTCGCCTGGCGGGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCa < 1:92780/239‑1 (MQ=255) tCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCa < 1:10043/239‑1 (MQ=255) tCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCa < 1:1076400/239‑1 (MQ=255) gAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGt < 1:301646/239‑1 (MQ=255) aaaGCGATTCGGCTGGCGCGCGATCCGGGCATTCGCACCCACCGGGTGGCAGGTTATGGCGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGtt < 2:758587/239‑1 (MQ=255) caggtttCGCCTGGCGGCGGATCTCGGCTATCCCCCCATCCAGCGGGCAGGTTGTGACGTCTAATACGAAGACCACGACGAAGGCACCCGGCAACGTTGTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGtt < 2:112504/232‑1 (MQ=255) aGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGGTTATGAAATCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGACCCCCTCACCGGGGTTc > 1:454549/1‑238 (MQ=255) ctaTTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGGCGAAGGCACACGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCAcc < 1:554354/237‑1 (MQ=255) aTTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGGGATTATGGAAACCGCGGTTATGAACTCCATCCGCAAAT‑GGAAAAAAT‑GGGACAGG‑TAGCTCGCCCCACCGCGGTTTACCg > 1:416810/1‑238 (MQ=255) ttCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGGTACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGGG‑ATGCTCGCCTCACCCTGGTTCACCGt > 1:758587/1‑238 (MQ=255) ttCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCCTTCGCCAAT‑GGGAAAAAT‑GGGGCGGG‑ATGCTCGCCTCACCg > 1:504293/1‑227 (MQ=255) ggCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGGTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACTAG‑ATGCTCGCCTCACCGGGGTTCACCGTCTACCCgg > 1:716646/1‑239 (MQ=255) gggcggATCTTGGCATTCGCGCCCACCAGCGGGCAGGTTATGAGGTTTATTACGAAGGCCACGGAGAAGGCCCCCGGCAACGTTTGGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGGAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGa < 2:204087/233‑1 (MQ=255) cgcgcgATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGGGATTATGGATACCCCGTTTTTGAACTCCCTCAGCAAAA‑GGAAAAAAT‑GGGGCGGG‑GTGCTCGCCTAACCGTGGTTCACCGTCTaa > 1:112504/1‑232 (MQ=255) aTTCGCCCCAGCCCGCTGGCAGGTTATGGCGTTTATTACGAAGGCCACGACGAAGGCCCCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCa < 1:506448/238‑1 (MQ=255) cGCATCTTCCATCTGGCAGGTTATGACGTCTATTACGAAGCCCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATT‑TGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGcc < 1:556917/239‑1 (MQ=255) cGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCCCCGTCTAACCGGGCGTCGGCAACCCCAgcg > 1:969125/1‑238 (MQ=255) ctCCAGCTGGCAGGTTATGGCGTTTATTAGGAAGACCCCGAAGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGTATAACAAGTAATGCTGGCGGTGGAGATTAGGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTGTGCCGTCTCCCCGTACGTCGGCAACCTCAGCGCCTgggg < 2:762105/238‑1 (MQ=255) gCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGGGGAGATTATGGAAACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGGCGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCCACCTCAGCGCCTGGGGGAATTATGt > 1:877409/1‑239 (MQ=255) ttATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGtt < 1:579593/186‑1 (MQ=255) cTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGGAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCCGACGTCCGCAACCTCAGCGCCCGGGGCCATGAGGTTCCCGCCGAACTGa > 1:1104732/1‑239 (MQ=255) cTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGCCGGCAACCCCAGCGCCCGGGGCAATGAAGTTTCCCCCCAACTGa > 1:125145/1‑239 (MQ=255) tATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGGAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGCCGGCAACCTAAACCCCTGGGGCAATGATGTTCCCGccgaaccgaa > 1:1017102/1‑239 (MQ=255) ttccGAAGCCCCCGCCGAAGGCCCCGGGCAACTTTTTGCGGAGGGGGTGGGGGGGGCAGTCGAAAAGGCGGCGGCATCAAAAGTAATGCTGGCGGTGGAGATTAGGGATACCGCGTTTATGAACCCCATCAGAAAAG‑GGAAAAAAG‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTCCCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAAc < 2:1085662/236‑1 (MQ=255) ttACGAAGGCCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGt < 1:755737/180‑1 (MQ=255) aCCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑TGGACGAG‑ATGCTCGCCTCAcc > 2:458777/1‑160 (MQ=255) aCCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCAcc < 1:458777/160‑1 (MQ=255) aCCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGGTTATGAACTCCCTCAGCAAAT‑GGGAAAAAT‑GGGACGGG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCCGGGGCAATGAGGTTCCCGCCCAACTGaaaacgggacat > 1:164578/1‑230 (MQ=255) cgacgaAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCCCCTGGGGCAATGATGTTCCCGCCGAACTGCAAATGGGCCTTGAcc > 1:959940/1‑239 (MQ=255) aaGGCCCCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGcc < 1:924851/191‑1 (MQ=255) ccccGGCAAGTTTTTGCGGAGGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCAAAAGTAAGGCTGGCGGTGGAGATTAGGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATcgccg < 1:875233/237‑1 (MQ=255) ggccctttttGCTGGGGGGTCGGCGGGGGGAGGCGAACGGGGGGCGGCATCACAATTAATGGGGGGGGTGGAGATTATGGATACCGCGTTTATCAACTCGATCATCAAAT‑GGAAAAAGT‑GGGACGGG‑ATGCTCCCCTCACCGTGGTTCACCGTCTCCCCGGAGGTCGGCACCCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATcc < 2:292301/233‑1 (MQ=255) gagggggtggggtGGGGGTTCTAACGGGGGGCGGCATCACAAGTAGTGCGGGGGGTGGAGATTATGGACACCGCGTTTATGAACTCCATCAGAAAAG‑GGAAAAAGT‑GGGCCGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGaca < 2:959940/235‑1 (MQ=255) aGGGCGGGGGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATGATGGATACCGCGTTTATGACCTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGAAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACAcc < 1:196616/238‑1 (MQ=255) ggCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGGGGGGATTGTGGGTAACGCGGTTATGAAATCCCTCAGGCAAT‑GGGAAAAAT‑GGGGCGAG‑ATGGTCGCCTCACCGTGGTTCACCGTCTCCCCGCACGTAGGCCACCCCCGACCCCGGGGCAATGATGTTCCCCCCGAACCGCAAATGGGGATTGACCCTAACGCCCCC‑AGCCCCCCCAAAAACACCCCACAAGTCACCg > 2:959829/1‑239 (MQ=255) tggAACGGGGGGGGGTATCAAAAGTAAGGGGGGGGGGGGAAATTGGGGACACCGTTTTTAAGACCCCCAGC‑GAAAATGGGAAAAAAG‑GGGACGAG‑AGCCTCGCCTCACCGGGTTTCACCGTCTCCCCGGACGCCGGCAACCTCAGCCCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCa < 2:125145/236‑1 (MQ=255) caaaCGGGCGGGGGCAACACAAGTTTGGCTGGGTGGGGAAATTTTGGAACCCGCGTTTATCAACCCCCTCAG‑AAAT‑GGGAAAAAA‑GGGGCGGGTGTGCCCCCCTCACCGTGGTTCCCCGTCTACCCGGACCTCGGCACCCTCAGCGCCTGGGGCATTGATGTCCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCa < 2:969125/235‑1 (MQ=255) cacaAGTAATGCTGGCGGTGGAGATTATGGATACCGCGGTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCCCCGCCTGGGGGAATGATGTTCCCGCCGAACTGAAACTGAGCATCGACAGGATCG‑CGCGCATCACCCCTAAAAACACCCCGCCAAGAACCCGGGAAAGTCCCGGAAAGATcgcg > 2:113943/1‑236 (MQ=255) ggCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGc < 2:612156/106‑1 (MQ=255) ggCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGc > 1:612156/1‑106 (MQ=255) ggAGATTATGGATCCCGCGTTTTTGCACGCCATCCGAAAAT‑GGAAAAAAT‑GGGCTGAG‑ATGCTCGCCTCCCCGTGGTTCACCGTCTACCCGGACGTCGGCCACCCCAGCGCCTGGGGCAAGGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTAGCGCCGCG‑ATTCCCCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAg < 2:416810/239‑1 (MQ=255) ggAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCCCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGCATCGCCGCG‑ATCCCCCTGAAAGACACCCAGCCAGGCACCGGGCAAAGTCCCGGACCGTTCCGCGACGTGCCGTTTGGCGAAg > 1:48481/1‑239 (MQ=255) aTTAGGGATCCCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCg < 1:1070266/232‑1 (MQ=255) ggATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACCGAAACTGGGCATTGCCCGTATCGCCGCG‑ATCCCCCTGAAAGACACCCAGCCAGCCACCGGGCAAAGCCCCGGCCAGTTCCGCACCGAGCCGTTTGGAGAAgggcgcgcgg > 2:253286/1‑231 (MQ=255) aTACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGGTTGGCGAAGGCTGCGTCGAt > 1:482343/1‑239 (MQ=255) aCCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGa > 1:852122/1‑198 (MQ=255) ccGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCCTTGACCGTATCGCCCCG‑ACCCACCTGAAAGACACCCAGCCCGTCACCGGGACAAGTCCCGGACAGTTCCGCGACGTGCCGGTTGGCGAAGGCTgggcccggg > 2:1070266/1‑229 (MQ=255) cgcgTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGCCGTGCCGTTTGGCGAAGGCTGCGTCGATTTCg > 1:501321/1‑239 (MQ=255) ccggTTTAAGAACCCCAACAGCAAAG‑TGAAAAAAG‑GGGACGGG‑ATCCCGCCCTCCCCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATTTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCg < 1:91548/236‑1 (MQ=255) cgTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGCCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAgg > 1:824637/1‑223 (MQ=255) ccccAACAGAAAAT‑GGAAAAAAT‑GGGAAGGT‑GTGCTCGCCTCACCGTGGTTCACGGTCTACCCGGGCGTCGGCAACCTCAGCGCCGGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCGTTGGCATCTTCa < 1:1069035/237‑1 (MQ=255) cTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCGTTGGCATCTTCa > 1:1105253/1‑239 (MQ=255) cATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCGTTGGCATCTTCaaa > 1:564771/1‑238 (MQ=255) aTCAGCAAAT‑GGAAAAAAT‑GGGCCGGG‑AGGCTCGCCCCCCCGTGGTTCCCCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATTTCCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCGTTGGCATCTTCAAAAc < 1:512456/239‑1 (MQ=255) ctccccacatgAAAAAATGGGGACGGA‑CTGCCCCCCCCCCCGGGGTCCGCCCTCCCCCCGGACGTGGGCACCCTCAGCGCTGGGGGCAATGTGGTCCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACCCCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCGTTGGCATCTTCAAAAc < 2:1079421/229‑1 (MQ=255) cAAAT‑GGAAAAAAT‑GGGCCGGA‑ATGCCCGCCCCACCGTGGTTCCCCGTCTACCGGGACGGCGGCAACCTCAGCGCCTGGGCAAATGATTTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCGTTGGCATCTTCAAAACGCTGc < 1:1070445/239‑1 (MQ=255) aagagaaaaaaaT‑GGCGCGCG‑GTCCTCGCCTCCCGGTTGTTCCGCGTCTCCCCGGACGGCGGCACCCCCAGCGCCTGGGGCAATGATGCCCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCGTTGGCATCTTCAAAACGCTGCa < 2:454549/233‑1 (MQ=255) aaT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCGTTGGCATCTTCAAAACGCTGCAt > 1:1091935/1‑239 (MQ=255) t‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTCCGTTGGCACCTTCAAAACGCTGCATaa > 1:532623/1‑239 (MQ=255) aaaaaaaG‑GGGACGGA‑ATGCTCGCCTCCCCGTGTTTCCCGGTCTCCCCGGGCGGCGGCACCCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCGTTGGCATCTTCAAAACGCTGCATaaa < 1:187870/237‑1 (MQ=255) ggACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCGTTGGCATCTTCAAAACGCTGCCTAAACTGAACTAt > 1:449911/1‑238 (MQ=255) gACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCGTTGGCATCTTCAAAACGCTGCATAAACTGAACTATc > 1:277048/1‑238 (MQ=255) | CGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT‑GGAAAAAAT‑GGGACGAG‑ATGCTCGCCTCACCGTGGTTCACCGTCTACCCGGACGTCGGCAACCTCAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATTGACCGTATCGCCGCG‑ATCCACCTGAAAGACACCCAGCCAGTCACCGGGCAAAGTCCCGGACAGTTCCGCGACGTGCCGTTTGGCGAAGGCTGCGTCGATTTCGTTGGCATCTTCAAAACGCTGCATAAACTGAACTATC > NC_000913/3749511‑3749976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |