| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,361 | 0 | C | . | 84.1% | 138.8 / 14.4 | 44 | pseudogene (2/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (2/5); new base . (34/3); total (36/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.47e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
| * | NC_000913 | 2,173,362 | 0 | C | . | 84.1% | 137.8 / 15.1 | 44 | pseudogene (1/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (2/5); new base . (34/3); total (36/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.47e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
GCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCC > NC_000913/2173129‑2173598 || gccgccAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATaccaccgccgc > 1:298079/1‑234 (MQ=255) cgccAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATaccaccgccgtat > 1:226812/1‑232 (MQ=255) cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATaccaccgccgcatgt > 1:729229/1‑229 (MQ=255) cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGAAGCACCTGCTTACCCGGCACCCAAACAGCAATTAAAAAGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGAAACCAcccccgaatgt > 2:1078270/1‑231 (MQ=255) gCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCaa > 1:858436/1‑238 (MQ=255) cAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGGGA‑GTGGGATAAAAATCAGG‑CTTGCCCATACCACCC‑‑CCGAATGTCCCAGCAGCaaa > 2:50633/1‑237 (MQ=255) gTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGGATGTCCCAGCAGCAACGCCGGATCAAg > 1:176000/1‑239 (MQ=255) cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCaa > 1:308525/1‑239 (MQ=255) cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACACCGGATCAAGGCCaa > 1:27866/1‑239 (MQ=255) cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGGGA‑GTGGGATAAAAATCAGG‑CTTGCCGTAACCA‑‑CCGCCGAATGTCCCCGCAGCAACGCCGGATCAAGGCCaa > 1:458268/1‑239 (MQ=255) gcgATCCACAGGGTGATGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGCTTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GGGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGAATGTCCCACGAGCAACCCCGGATCAAGGCCaaaaag > 2:811911/1‑235 (MQ=255) tGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGTTCAAGGCCAATCAGGAACTCCTGAccgccg > 1:383107/1‑239 (MQ=255) tGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGCATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgccg > 1:37938/1‑239 (MQ=255) aTAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGCGA‑GTGGGATAAAAATAAGG‑CTTGCCGACACCA‑‑CCGCCGTATGTGCCAGAACCAACGCCGGATCAAGGCCAACCAGGAACTCCTGCCCGCCGAACt > 1:1088261/1‑238 (MQ=255) aaTGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAAACCCGGATAAAGGCCAAAAAGAAAACCCCGACCCCCCAACtcc > 2:338574/1‑236 (MQ=255) atcggccacCCGGAGATTAGGGGGGGAAACATTTCTCCCGGATCCGCGGCG‑ACCGCAATCGCCGATAAGAGGCAGAGGGTGGAAAGAACCACAAAGGGAACCCCGTGATTACCCGGCACACAAACATCAA‑TAAAAAGGTGAGGGGGGAAAAAAAGCAGG‑TTGCCCGATCCTA‑‑CCGCCGTATGCCCCAGCAGCAACGCCGGATCAAGGCCAACCAGGACCTCGCTACCGCCGATCTTCGc < 2:846578/233‑1 (MQ=255) gaCACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATAAAGGCCAATCAGGAACTCCTGACCCCCGAACTTCGCCTGTa > 1:788864/1‑239 (MQ=255) acacCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGAAACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAACCAGGAACTCCTGACCGCCGAACTTCGCCTGTaa > 1:653952/1‑239 (MQ=255) aagtggCGGAACAATTTCCCAGGAGCCACGGCG‑CCCGCCACCCCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTCCCCGGCACACAAACAGCAATAAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 1:25412/234‑1 (MQ=255) ggggtgggAACAGTTTTCCCCCGTGCCCCGCGCCCCGCCACCGCCAGGAAGAAGCCGAGGGTGGAAAGATCGCAAACGGGCAGCACCTAATCCCCCGGCACAAAAACGGCAATTAAAAGGGGGA‑GTGGAATAAAAACCAGG‑CTGCCGGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 2:308525/233‑1 (MQ=255) cGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCACCGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCCGTAACCGACTCAGAGCCtcgtt > 1:714817/1‑235 (MQ=255) cGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGCACTTCGCCTGTAAACGACCACGAGCCTGCtt > 2:1036984/1‑239 (MQ=255) agttttCCCAGACGCACGGCA‑CCCGCCATCGCCGAGAAAAACCCGATGGGGGAAAAATCGCCAAACGGAAGCACCTGTTTACCCGGCACAAAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt < 1:811911/236‑1 (MQ=255) aGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACTTGATTCCCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGAAAAAAATCAGG‑CTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt < 1:50633/239‑1 (MQ=255) cACGATGCACGGCG‑ACCGCCATCGCCACGCAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGACCTTCGCCTTTAAACGCCTACGAGCCTGCTTAGCCATGGGCGtt > 1:334286/1‑239 (MQ=255) tGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAACCGACTACGAGCCTGCTTAGCGATGGGCGTTaaa > 1:272624/1‑237 (MQ=255) tGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCtaatcg > 1:1083848/1‑220 (MQ=255) tGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACAACAACGACCCCTCTTAGCGATGGGCGTTAAAcc > 2:801863/1‑239 (MQ=255) aTGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGCAAACGGCCACGAGCCTGCTTCGCGCTGGACGTTAAACCATCCCTGAGGGGTTTCATCACCCGTGGccata > 2:81296/1‑234 (MQ=255) tggCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTagcagc > 1:941110/1‑239 (MQ=255) tggCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTagcagc > 1:260182/1‑239 (MQ=255) gCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGCACTTCGCCTGTAAACGACTACGAGCCTGCTTCACGATGGGCGTTAAACCATCCATAATGGGTTTAATACCCCGTGGCATTAGCAGCATCAccccc > 2:741433/1‑234 (MQ=255) caCCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTCCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTAcc > 1:209932/1‑238 (MQ=255) ctgaaTTCCCCGGCACAAAAACGACAATAAAAAGGGTGA‑G‑GGGAAAAAAAACAAG‑CCTTCCCA‑ATCCCCCCGCCGTATGCCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGcc < 1:338574/235‑1 (MQ=255) gATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGGTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCa > 1:896702/1‑237 (MQ=255) gATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGCCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGc > 1:745020/1‑239 (MQ=255) cccccccaaaaCACAAATTAAAAGGGGGG‑GGGGGGAAAAAACCGGG‑GTTGCCAAT‑CCCCCCCGCCGTATGTCCCAGCAGCACCGCGGGACCAAGGCCAATCGGGACCCCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAAt < 2:260182/231‑1 (MQ=255) ggCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTCCAATac > 1:710092/1‑239 (MQ=255) ggCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACCAGCCTGCTTAGCGATGGGCGTTAAACCATCCCTGATGGGTTTAATCACCCGTGGCATTAGCAGCTTCACTCCCCCCCTTTTTACCGCCACCTGCacaac > 2:434278/1‑235 (MQ=255) aaaCAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAAAACACCTTTg > 1:868606/1‑239 (MQ=255) aaaCAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGCATGTCCCAGCAGCAACGACGGATCAAGGCCACTCAGGAACTCCTGACCGCCGAACTTCGCCTGGAAACGACTACGAGCCTCCTTAGCGATGGGCGTTTAACCATCCACGATGGGGTTAATCCCCCGTGGCATTACCCCAATCAACGCCACCGGTTTTAACGCCAGCCGCAAAAAAccgtgt > 2:557254/1‑235 (MQ=255) aaaaGCAAATAAAATGGGGG‑GTGGGAAAAAAACCCGGCCCTGCC‑CTACC‑CCCCGCCGTATGTCCCAACAGAACCGCCGGATCAAGGCAAACCAGGACCCCTGGTCCGCCGAATTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTg < 2:896702/236‑1 (MQ=255) gCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTCCCGCCGTTTTTACCGCAAGCTGCAATACACCTTTGACacc > 1:23757/1‑237 (MQ=255) ggTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCATCTGCAATACACCTTTGACATCGTAACCCGCGa > 1:281764/1‑239 (MQ=255) a‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGGGGa > 1:312967/1‑238 (MQ=255) a‑GTGGGATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATAAACCTTTGAAATCGTAACCCGCGAGGag > 2:495787/1‑238 (MQ=255) gATAAAAATCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCTTGGCATTAGCAGCATCACTGCAGCCGTTTTTACCGCCAGCTGCAATACACCTTCTACATCGTAACCCCCGCGGATGCCgt > 1:423367/1‑238 (MQ=255) aTCAGG‑CTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCCCGCCCCCCGTTTTTACCGCCACCCGCACAAAACCTTTGCCAACATAACCCCCGAGGAAGCCgcaaataa > 2:358046/1‑231 (MQ=255) cccccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGCCCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAAccc < 1:801863/238‑1 (MQ=255) || GCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCC‑GAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCG‑ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGA‑GTGGGATAAAAATCAGG‑CTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCC > NC_000913/2173129‑2173598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |