Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,661,665 C→G 13.4% R418G (CGT→GGT)  mdtF → anaerobic multidrug efflux transporter, ArcA‑regulated

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,661,6650CG13.4% 197.7 / 3.1 78R418G (CGT→GGT) mdtFanaerobic multidrug efflux transporter, ArcA‑regulated
Reads supporting (aligned to +/- strand):  ref base C (38/28);  new base G (8/4);  total (46/32)
Fisher's exact test for biased strand distribution p-value = 7.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AAGTTTTCAAAACACTGGTTGAGGCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCAT  >  NC_000913/3661429‑3661900
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                             
aaGTTTTCAAAACCCTGGTTGAGGCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCg                                                                                                                                                                                                                                              <  1:8560/238‑1 (MQ=255)
    tttCAAAATTCTGGTTGAGGGCTTGTACCTATTCTTCCGGGGTATTTTGCTGTTTGTGGAAAACTTCCGGTCATCACACATCCGGTCGATTGCCGATACCGTGGTGAGTCTAGGGACGTTTGCGATCTTGTGGGTGGGCGGTTGCAACATCAACACGTTTACTATGTTCGGGATGGTGCTGGCGATAGGTTTACTTGTGGAAGACTCCAGCGTGGTGGTGGAGAACTTCGAGCatgacg                                                                                                                                                                                                                                         <  2:194745/239‑4 (MQ=255)
    tttAAAAACCTTGGGTGAGGCTTTCATCCATGGCTTCCTTGGCATGTGTCTGTTTTGTGCGAATTTCCGGGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCa                                                                                                                                                                                                                                         <  2:9146/239‑1 (MQ=255)
       taaacctcTGGTTTGGGTTTTCACCCTATTTTTCCGTGTCATGTATCTGTTTTGGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTGGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTg                                                                                                                                                                                                                                      <  2:434074/232‑1 (MQ=38)
         aaaCCCTGGTTGAGGTTTTCCTCCCTGTTTTCGTGGGTATGGTTCTGTTTGTGCAGAATTTCCGTGCCCAAATCATCCCGACGATTGGCGTACCGGTGGTTATTCGCGGGACGTTTGCGGTCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCg                                                                                                                                                                                                                                    <  2:989807/239‑1 (MQ=37)
             acTGGTTGAGGCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTCTGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATTACGCCATCGTGGGGGTGGTGAAAGTCGGGCGGGTACTTGCGGGAg                                                                                                                                                                                                                                >  1:952875/1‑239 (MQ=255)
               tGGTTGAGGCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGGGGATGACGCCATCGTGGGGGGGGGGAACGTCGGGCGGGTCATTTGGGAGGAt                                                                                                                                                                                                                              >  1:148455/1‑239 (MQ=255)
                      ggCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGTTAGGGTTACTGGGGGATGCAGCCATCCTGGTGGTGGGGAACGTCGAGGGGGTCATTGGGGAAGATAAGCTa                                                                                                                                                                                                                       >  1:90159/1‑238 (MQ=255)
                      ggCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGGGCTGGCGGTAGGGTTACTGGTGGATGACGCCATCGGGGTGGGGGGGAACGGCGGGGGGGTCATTGCGGAAGATAAGCTa                                                                                                                                                                                                                       >  1:590110/1‑238 (MQ=255)
                      ggCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGGTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGGTAGGGTTACTGGTGGATGACGCCCTCGTGGGGGGGGGGGAGGGCGAGGGGGTCATTGCGGAAGaaaaaccac                                                                                                                                                                                                                      >  2:1041376/1‑234 (MQ=255)
                      ggCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGGTTCACCATCAACACGTTGACTATGTTCGGGAGGGTGCTGGCGATAGGGTTACTGGGGGATGACGCCATCGTGGTGGTGGGGAACGTCGAGGGTGTCATTGCGGAAGGTAAGCTa                                                                                                                                                                                                                       >  1:796058/1‑238 (MQ=255)
                           tcatcCTAGTCTTCCTGGTCATGTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATGGGGTTACTGGTGGATGACGCCATCGTGGTGGGGGGGAACGTCGGGCGTGTCATTGCGGAAGATAAGCTAccgccc                                                                                                                                                                                                                >  1:498230/1‑238 (MQ=255)
                                        ccTGGTCATGTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTTACTATGTTCGGGATGGGGCTGGCGATCGGGGTACTGGTGGATGACCCCCTCGTGGGGTGGGAGAACGTCGCGCGGGGCCTTTCGGGAGGTAAACTTCCCCCcaaggaaggcggcc                                                                                                                                                                                                   >  1:593189/1‑233 (MQ=255)
                                              cATGTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGGGGGGAACGTCGAGGGGGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAACGACGCATAAAt                                                                                                                                                                                             >  1:108152/1‑239 (MQ=255)
                                                tGTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTTACCATCAACACGGTGGCTTTGTTCGGGATGGTGCTGGCGATCGGGGTACTGGTGGGTGACGCCCTCGTGGTGGTGGGGAACGTCGAGCGGGTCATTTCGGGAGATAAACGAACGCCGAAGGAAAGGAAGCACaaaaag                                                                                                                                                                                           >  2:258982/1‑236 (MQ=255)
                                                 gTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTACGATCTTGTCGGCGGTCGGTTTCACCATCAACACGATGACTATGTTCGGGATGGGGCTGGCGGTAGGGTTACTGGTGGATGACGCCATCGTGGGGGTGGAGAACGTCGAGCGTGGACTTGCGGAAGATAAGCTACCGCCGAAGGGAGCGACGCATAAATCGa                                                                                                                                                                                          >  1:146049/1‑239 (MQ=255)
                                                  tATGTGTTTTTGCAGAATTTCAGTGCCACATTCATGCCGGCGTGTGGCGTGCCGGTGGTTATGCTCGGGACGTTGGCGATTTTGCCGGGGGTCGGTTTCACCATCAAGACGTTGACTATGTTCGGGATGGGGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGGGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGAt                                                                                                                                                                                         <  2:291427/239‑1 (MQ=255)
                                                  tATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGGTTCACCATCCACAAGTTTACTATGTTCGGGGTGGGGCCGGCGGTAGGGGTACTGGGGGATGAAGCCAACGGGGGGGGGGGGAAAGCGGGGGGGGTCCTTGGGGGAGAGAAAGTACCGGGGGAAGGAAGGGACGCAaaaacaag                                                                                                                                                                                          >  2:251392/1‑235 (MQ=255)
                                                  tATCTGTTTTTGCAGAATTTCCGTGCCACAATCACCCCGGCGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGAt                                                                                                                                                                                         <  1:597364/239‑1 (MQ=255)
                                                      tGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGGGAACGTCGAGGGTGTCATTGCGGAGATAAAGCTACCCCCGCAGGAAGCGGCGCATAAAtttgtctct                                                                                                                                                                                     >  1:667258/1‑231 (MQ=39)
                                                       ttttttGCAGAATTTCCGGGCCACAATCATCCCGACGCTTTCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGGTAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGc                                                                                                                                                                                    <  1:809692/238‑1 (MQ=255)
                                                       gTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGGCGGTTTCACCATCAACACGTTGGCTTTGTTCGGGATGGTGCTGGGGATAGGGGTACTGGTGGATGACGCCCTCGGGGGGGGGGGGGACGGCGGGGGGGGCATTGCGGGAGATAAAGTCACCGCGAAGGAAGCGGGCCAAAAAACAATggggg                                                                                                                                                                                    >  2:597384/1‑238 (MQ=255)
                                                            ttggaaaaTTTCCGTGCCACATTTATCCCGACGTTTGGCGTACGTGTGGTTATTCTCGGGACGTTTGCGATCTTGTGGGCGGTCGGTTTCCCCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTAATGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGAt                                                                                                                                                                                <  2:1023858/233‑1 (MQ=39)
                                                                                                 ccGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGGTTCACCATCAACACGTTGACTATTTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGGGGTGGGGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGAGCCAACGTGCGCTGGGCGGGATTTCCGTTGGTCTTTc                                                                                                                                            >  1:636018/1‑238 (MQ=255)
                                                                                                   gTACCGGTGGTTCTCCTCGGGACGTTGGCGATCTTGTCGGCGGTCGGTTTCACCAGCAACACGTTGACTATGTTCGGGATGGGGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGc                                                                                                                                         <  1:143656/239‑1 (MQ=255)
                                                                                                   gTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGc                                                                                                                                         <  1:258982/239‑1 (MQ=255)
                                                                                                                  tttcGGGACGTTTGCGTTCTTGTCGGCGGTCGGTTTCCCCATCAACCGGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACGGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGa                                                                                                                           <  2:206391/237‑1 (MQ=255)
                                                                                                                  tctgGGGACTTTTGCGATCTGGGCGGCTGTCTGTTTCCCCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCTATAGGGTTACTGGTGGATTACGCCATCGTGGTGGTGGAGAACGTCGAGCGTTTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGa                                                                                                                           <  1:26685/239‑1 (MQ=255)
                                                                                                                  tctcGGGACGTTTGCGATTTTGGCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGa                                                                                                                           <  1:226876/239‑1 (MQ=255)
                                                                                                                    ccGGGACGGTTGGGGTCTTGTCGGGGGTCGGTTTACCCATCAACCCGTTGACTTTGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATg                                                                                                                         <  1:251392/238‑1 (MQ=39)
                                                                                                                     cGGGACGTGTGGGATTTTTGCGGGGGGCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATgg                                                                                                                        <  1:12236/239‑1 (MQ=255)
                                                                                                                        ggcGTTTGCGATTTTGGCGGCGGTCGGTTTCACCATCAACACGTTGACGGTGTTCGGGATGGTGCTGGGGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGcc                                                                                                                      <  1:623384/236‑1 (MQ=255)
                                                                                                                             ttGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATgggg                                                                                                                                                                                     <  1:347527/170‑1 (MQ=255)
                                                                                                                              tGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGGGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGGATTGCCGTTGTTCTTTCCGCAAGGTTTAGGCCGATGGCCTTTATGa                                                                                                               >  1:261742/1‑239 (MQ=255)
                                                                                                                               ggggttttGTCCGCGGTCGGTTTCACCTACAACACGTTGACGAGGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGGGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAg                                                                                                              <  1:376592/233‑1 (MQ=39)
                                                                                                                                  gtCTTGTCGGGGGTCGTTTTCCCCTTCACCATGTTGATTTGTTTGGGGGTGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGGGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCgg                                                                                                           <  2:489752/238‑1 (MQ=255)
                                                                                                                                    cTTGGCGGCGGTCGGTTTCACCAGCAACACGGTGACTAGGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTg                                                                                                         <  1:1034850/239‑1 (MQ=255)
                                                                                                                                     ttGTCGGCGGTCGGTTTCACCATCAAAACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGAAGCCATCGTGGTGGGGGGGAACGTCGGGCGGGTCATTGCGGAAGATAAGCTACCGCCGAAGGGAGCGACGCATAAAACGATGGGGCAGAGCCAAAGGGCGCTGGTGGGGTGTGCCGTGGTTTTTTTCCGAGGGTTGTGGCCGAGGGCCTTTTTGGGCGGGGc                                                                                                        >  2:888788/1‑239 (MQ=255)
                                                                                                                                               tcggtTTCACCATCAACACGTTGACTATGTTCGGGGTGGTGCTGGCGGTAGGGTTACTGGTGGGTGACGCCCTCGTGGGGGGGGAGAACGTCGAGCGGGTCATTGCGGAAGATAAGCTACCGCCGGAGGAAGCGACGCCTAAATCGTTTGGGCGAATCCCACGGGCGCTGGGGGGGTATGCCGGTGTTTTTTCCCCAGGGTTTATTCCCATGGCCTTTTTTAGGGGGGCAACCGGGgag                                                                                              >  2:65332/1‑239 (MQ=255)
                                                                                                                                                             aaCACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTCCCGTTGTTCTTTCCGCAGTGTTTTTGCCGATGGCCTTTATGAGCGGGGCAACCGGGGGGATCAACCGCCAGt                                                                                 >  2:589152/1‑238 (MQ=255)
                                                                                                                                                                   ttGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGGGCAACCGGGGAGATCTACCGCCAGTTTTCCa                                                                           >  1:973672/1‑238 (MQ=255)
                                                                                                                                                                            ttCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGc                                                                                                                                         <  2:157812/167‑1 (MQ=255)
                                                                                                                                                                            ttCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGc                                                                                                                                         >  1:157812/1‑167 (MQ=255)
                                                                                                                                                                                ggATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGTTGGCCTTTATGAGCGGTGCAACCGGGGAGATTTACCGCCGGTTCTCCATCAcccctgtccct                                                             >  2:209432/1‑229 (MQ=255)
                                                                                                                                                                                ggATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATACGCGTGGCAACCGGGGAGATCCACCGCCAATTGTCCATCACCCTGGTctcc                                                             >  2:456962/1‑239 (MQ=39)
                                                                                                                                                                                    ggTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCTTAAATCGCTGGGGCAGATCCAACGTCGTCGGGTCGGGATTGCCGTTGTTCTTTCCGCAGTGTTAATGCCGATGGCCTTAATGAGCGGTCAACCCGGGGAGATCTACCGCAAGTTTCCCATCACGCTGACttcctc                                                           >  2:244816/1‑237 (MQ=255)
                                                                                                                                                                                    ggTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGAGGGCCTTTATGCGCGTGGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCa                                                         >  1:640506/1‑239 (MQ=255)
                                                                                                                                                                                      tGCTGGCGATCGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTCTTGACGTTGTTCTTTCCGCCGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACGTGGGACATCTACCGCACGTTCTCCTCCACGCTGATCtcctccct                                                        >  2:700162/1‑236 (MQ=255)
                                                                                                                                                                                      tGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGAAGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTCCCGTTGTTCTTTCCCCAGGGTTTATGCCGATGGCCTTTATGGTCGGTGCCACCGGGGGAGTATACCGCCCGTTACCCCTCACCCCGATCTCCCCCagg                                                       >  2:564517/1‑237 (MQ=255)
                                                                                                                                                                                       gcgggCGATGGGGTTCCGGGTGGATGACGCCATCGTGGCGGGGGAAAACGTGGGGCGTTTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGAGGGGGCAGATCCAAGGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCAtg                                                       <  1:726452/235‑1 (MQ=255)
                                                                                                                                                                                          ggCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGTTGGCCTTTATGAGCGGTGCAACCGGGGAGGTCACACGCCAGTTTTCCACCCCCCGAATCTCCTCCAggcg                                                     >  2:378371/1‑236 (MQ=255)
                                                                                                                                                                                            cGATGGGGTTACGGGTGGATGCCGCCATGGGGGGGGTGGAGAACGTCGAGGGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGGTGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATgctgct                                                  <  1:221426/238‑1 (MQ=255)
                                                                                                                                                                                                aGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCACCGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCACCCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCGGCTTTCat                                             >  1:238918/1‑238 (MQ=255)
                                                                                                                                                                                                  ggTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGa                                                                                                                           <  1:202728/159‑1 (MQ=255)
                                                                                                                                                                                                       cgggtgggtgACGCAATCGGGGGGGTGGAAACCGTCGAGGGTGTCATGGCGGAAGATAAGCTACCGCCGAAGGAAGGGACGCATAAATCGATGGGGCAGATCCAACGGGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTtgt                                      <  1:65332/237‑1 (MQ=255)
                                                                                                                                                                                                            ggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGAt                                                                                                                                                                                         >  2:809721/1‑87 (MQ=255)
                                                                                                                                                                                                            ggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGAt                                                                                                                                                                                         <  1:809721/87‑1 (MQ=255)
                                                                                                                                                                                                            ggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGCTGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGGTCTCCTCCATGCTGCTTTCGGTATTTTGGGCaa                                 >  1:345970/1‑239 (MQ=255)
                                                                                                                                                                                                            ggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGGGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTTTGGCaa                                 >  1:393910/1‑239 (MQ=255)
                                                                                                                                                                                                            ggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCaa                                 >  1:98565/1‑239 (MQ=255)
                                                                                                                                                                                                            ggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGCCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCCGTTCCCCATCCCGCTGATCGCCCCCCACCTGCTTTACGTAGTTGTGGCaa                                 >  2:639031/1‑239 (MQ=255)
                                                                                                                                                                                                             gATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGGGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAAt                                >  1:83824/1‑239 (MQ=255)
                                                                                                                                                                                                              ttgccGCCATCGGGGTGGGGGAAACGGTCGGGGGTTCCATTGGGGAAGTAAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAAt                                <  1:589152/234‑1 (MQ=255)
                                                                                                                                                                                                                  cGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTCCCGCCGAAGGACGCGACGCATAACTCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGGGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCACTCTGCTTTCCGTATTTGTGGCACTGAGca                           >  2:101710/1‑238 (MQ=255)
                                                                                                                                                                                                                  cGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGTAGATCTACCGCCAGTTCTCCATCACGCTGAGCTCTTCCAGGCTGCTTTCCGTATTTTGGGCaactgtct                           >  1:282194/1‑233 (MQ=255)
                                                                                                                                                                                                                  cGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTCCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGcc                           >  1:285692/1‑239 (MQ=255)
                                                                                                                                                                                                                   cccATGGTGGTGGTGGAGAACGTCGGGCGTGTCATTGCGAAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCt                          <  1:195895/238‑1 (MQ=255)
                                                                                                                                                                                                                   cccATGGTGGGGGTGGAGACCGTCGAGCGTGTCATGGCGGAAGAGAAGCTACCGCGGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCt                          <  1:564517/238‑1 (MQ=255)
                                                                                                                                                                                                                    ccATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGGGGAACCTGGGGGATCTACCGCCAGTTACCCATCACGCTGATTTCCTCCATGCTGCTTTCAGTATTTGTGGCAATAAGCCt                          >  1:1049237/1‑238 (MQ=255)
                                                                                                                                                                                                                     cATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCCCCGGGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGGGATTTACCGCCCGTTTTCCATCACCCTTATCCCCCCCACGCTGCTTTCAGTATTTTGGGCAATCAGccgg                         >  2:331427/1‑236 (MQ=255)
                                                                                                                                                                                                                            gtggtggAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGAtctc                                                              >  1:198584/1‑194 (MQ=255)
                                                                                                                                                                                                                              ggtggAGAACGTCAGGGGGTTCATTGGGGAAGATAGCCTCCCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACccctgcc                <  1:717586/238‑1 (MQ=255)
                                                                                                                                                                                                                               gtggAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCCCCCCGATCTCCTCCATCCTGATTTCCGTATTTGGGGCAATGAGCCTGACccctgc                 >  2:901280/1‑236 (MQ=255)
                                                                                                                                                                                                                                tggAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATgggg                                                                                                                                                                                     <  2:868372/71‑1 (MQ=255)
                                                                                                                                                                                                                                tggAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATgggg                                                                                                                                                                                     >  1:868372/1‑71 (MQ=255)
                                                                                                                                                                                                                                   agaACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGAAAGCGACGCCTAAATCGATGGGGCCGCTCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGCGTTTCTGCCGATGGCCTTCATGAGCGGTGCACCCGGGGAGATCTACCACCCGTTCACCCTCACGCTGATTTTCCCCCCGCCGCTTTCAGTATTTGTGCCACTAAACTTCACccccgcccaagc           >  2:247373/1‑234 (MQ=255)
                                                                                                                                                                                                                                         tCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCACTCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACccctgcccttggggccccc    >  2:772494/1‑229 (MQ=255)
                                                                                                                                                                                                                                            aGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCTTCCATGCTGCTTTCAGAATTTTTGGCAATGAGCCTGACCCCTGCCCTTTGCGccacctg  >  1:658637/1‑236 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                             
AAGTTTTCAAAACACTGGTTGAGGCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTTTGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCGTACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCAT  >  NC_000913/3661429‑3661900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: