Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 4,049,891 IS5 (–) +4 bp intergenic (+139/‑5) polA → / → spf 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease/Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2288919 =NA (NA)87 (1.310) 64/284 0.0 100% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 = 4049894 0 (0.000)intergenic (+142/‑5) polA/spf 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease/Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
* ? NC_000913 = 2290113NA (NA)68 (1.020) 50/284 0.3 100% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 4049891 = 0 (0.000)intergenic (+139/‑8) polA/spf 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease/Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent

TTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC  >  NC_000913/2288778‑2289056
                                                                                                                                             |                                                                                                                                         
ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCCATGCTATGGGTGAATATaagg                                                                                                                                          >  2:578583/1‑143 (MQ=255)
   tataTGCTGTTCTCCGCCAGGATTGATTTTCGTTTTATTGGCGGGCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaaggaag                                                                                                                                       <  2:473395/143‑1 (MQ=255)
      atGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAAACGTCTCATCTTACTTAACAGTTGATGCCAAAGCTCTGGGTGAATATGAGGAAAGTg                                                                                                                                    >  2:473207/1‑143 (MQ=255)
      atGCTGTTCTCCGCCAGGATTGATTTTCGTATAATTGCCGGTCACATAAACTAGCTGGGTATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAGTGCTATGGGGGAATATAAGGAAGGTg                                                                                                                                    >  1:820931/1‑143 (MQ=255)
       tGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTACGGGGGAATCGAAGGAAGGTGc                                                                                                                                   >  2:665468/1‑143 (MQ=255)
              ctcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAg                                                                                                                            >  2:509044/1‑143 (MQ=255)
                ccgccgGGATTGATTTTCGTATTATTGGCCGTCCCATAAGCCAGCTGGATATCTTTTTCCAGGACAACGCCATCATCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCg                                                                                                                          <  2:504276/143‑1 (MQ=255)
                 ctccAGGATTTATTTTCGTATTATTGACGTTCCCATAAACCAGCCGCTTATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgg                                                                                                                         <  2:741617/141‑1 (MQ=255)
                  gCCAGGATTGTTTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCggg                                                                                                                        <  2:382733/143‑1 (MQ=255)
                  gCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAATGAAGGTGCGAATAAGCggg                                                                                                                        >  1:918301/1‑143 (MQ=255)
                  gCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCggg                                                                                                                        <  1:1012051/143‑1 (MQ=255)
                  gCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCggg                                                                                                                        >  1:911654/1‑143 (MQ=255)
                  gCCAGGATTGATTTTCGTATTATTGGCGGTCACATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCGATGGGCGAATATAAGGCAGGTGCGAATCAGCgga                                                                                                                        >  2:552964/1‑142 (MQ=255)
                    cAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCACCTGTCTCACCATACTCAACAGTCGATGCCACTGCTACGGGTGAATAAACGGAATGTGCGAATAACCGGGGa                                                                                                                      >  2:186633/1‑143 (MQ=255)
                        attgattTTCGTATTATTGGCGGTCCCCTATACCAGCTGGATATCTTTTTCCAGGACAACACCATCGACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAtt                                                                                                                  <  1:1129468/143‑1 (MQ=255)
                        attgattTTCGTATTATTGGCGGTCCACAATATCACTTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAtt                                                                                                                  <  1:928068/143‑1 (MQ=255)
                             ttttCGGACTATTGGCGGGCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACACAACAGTTGATGCCAATGCTATGGGGGAATACAAGGAAGGTGCGAATAAGCGGGGAAATtcttct                                                                                                             <  1:1139242/143‑1 (MQ=255)
                             atgtCGTATTATTGGCGGTCCCATCACCCACCTGGATATCACTTCCCAGGACAACACCATCAACTGCCGCACCACACTCAACAGCTGATGCCAATGCGATGGGTGAATATAAGTAAGGTGCGAATAAGCGGGGAAATtcttct                                                                                                             <  1:500240/140‑1 (MQ=255)
                                   tattatTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                                                                       >  1:470169/1‑143 (MQ=255)
                                   tattatTGGCGGTCCCATAAACAAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGCATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                                                                       >  1:890066/1‑143 (MQ=255)
                                     ttattGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                                                                                                     >  1:125202/1‑143 (MQ=255)
                                     ctattGGCGGTCCCATACACCAGCGGGATATCTTTCTGCAGGACAACACGAGCAACTGTCTCACCATACTCGAGAGTTGATGCCAATGCTATGGGTGAAGATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                                                                                                     <  2:1088811/142‑1 (MQ=37)
                                        ttGTCGGTCCCATATACCAGCTGGATATCTTTTTCCAGGTCAACACCATCACCTGTCTCACCATACTCCACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                                                                  <  2:64334/143‑1 (MQ=38)
                                             ggTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcat                                                                                             <  2:557112/143‑1 (MQ=255)
                                                   aTAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt                                                                                       >  1:842921/1‑143 (MQ=255)
                                                   aTAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt                                                                                       >  1:801487/1‑143 (MQ=255)
                                                   aTAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATCCCAATGCTATGGGTGACTATAAGGAACGTGCGAATCAGCCGGCAAATTCTTCCCGGCCGACTCCGtcatttcctc                                                                                       >  2:333049/1‑140 (MQ=255)
                                                   aTAAACCAGCTCTACATCTTCTTCCAGGACAACACCATCAACTGTCTCACCATACTCCCCACTAGGTGCCACTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt                                                                                       <  1:611330/143‑1 (MQ=25)
                                                    tAACCCAGCTGGAGATCTTTTTCCGTGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTGTGGGTGAATATAATGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTcatttcattt                                                                                      <  2:504163/143‑1 (MQ=37)
                                                       aCCAGCCGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                                                                   <  1:174855/143‑1 (MQ=255)
                                                            cgggATCTCGTTTTGCAGGACAACTCCAGTGACTGTCTCACCATACTGAACAGTTGATGCCAATGCTACGGGTGATTATAAGGAAGGTGCGAATTAGCGGTGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                                                              <  2:91936/141‑1 (MQ=21)
                                                               gATATCTTGTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                                                           <  2:1065978/143‑1 (MQ=255)
                                                                atatCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                          <  1:509044/143‑1 (MQ=255)
                                                                atatCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCGATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                          <  1:500385/143‑1 (MQ=255)
                                                                 tatCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAATGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg                                                                         >  1:607044/1‑143 (MQ=255)
                                                                 tatCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg                                                                         >  1:102030/1‑143 (MQ=255)
                                                                 tagcTTTGTCCACGACAACTCCATCAACTGTCTCTCCATACTCGACAGTTTATGCGTATGCTATGTGTAAATATAGGGCAGGTGCTAATTAGCGTGTCAATTCTTCTCGGCTGAATCAGTCATTTCATTTCTTCATGTTTggg                                                                         <  2:683226/140‑3 (MQ=16)
                                                                  atCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAGCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc                                                                        <  2:1165201/143‑1 (MQ=255)
                                                                    cTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCg                                                                      >  1:900047/1‑143 (MQ=255)
                                                                     tttgtCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAAGGCTATGGGTGAATATGAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCgc                                                                     >  1:623282/1‑142 (MQ=255)
                                                                      ttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATATTTAAGcgcat                                                                    >  2:828239/1‑139 (MQ=255)
                                                                          ccAGGACACCACCATCCACTGTCTCACCATACTCGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                                                                <  1:1106796/143‑1 (MQ=255)
                                                                            aGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                                                              >  1:748633/1‑143 (MQ=255)
                                                                             ggACTACACCAGCCTCTGTCTCGCCATACTCGACAGTTGATGCCAATGCGATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                                                             <  2:190654/143‑1 (MQ=18)
                                                                              gACAACACCATCCACTTTCTCACCCTACTCAACATTTTATGCCAATGCTATTGGTGAATATAAGGAAGGTGCGAATACGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc                                                            <  2:112366/143‑1 (MQ=18)
                                                                              gACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATCAGGAAAGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGGCATTTCATCTCTCCATGTTTGAGCCGATTTTTtctc                                                            >  2:896220/1‑143 (MQ=25)
                                                                               acaacaCCATCAACTGTCGCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAGAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCGCGGCTGACTCAGTCATTTCAGTTCGTCATGTCTGAGCCGATTTTTACTcc                                                           >  2:956904/1‑143 (MQ=21)
                                                                                caacaCCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                                                          <  2:621414/143‑1 (MQ=255)
                                                                                   cacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTa                                                       >  1:934621/1‑143 (MQ=255)
                                                                                    acCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa                                                      >  2:609395/1‑143 (MQ=255)
                                                                                     ccATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAACTTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa                                                     <  1:1032018/143‑1 (MQ=255)
                                                                                      cagcagcTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAt                                                    <  1:388928/137‑1 (MQ=255)
                                                                                          aaCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTGATGGCAGTGCGTCAAGATCAAGACGTATTTTTCTCCCGTAAATGCCt                                                >  1:547396/1‑143 (MQ=21)
                                                                                          aaCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt                                                >  2:86100/1‑143 (MQ=255)
                                                                                              gTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATGTCGTTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                            >  1:84613/1‑143 (MQ=255)
                                                                                                 tcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa                                         <  1:103510/143‑1 (MQ=255)
                                                                                                  cACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg                                        >  2:492262/1‑143 (MQ=255)
                                                                                                   aCCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCCTTTCATTTCTTCATGTTTAAGCCGATTTTTTCTCCCGTAAGTGCCTTGAAACAGc                                       >  1:201310/1‑143 (MQ=255)
                                                                                                   aCCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTGATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTCACTTGCTTGCATCAGc                                       >  2:794897/1‑143 (MQ=18)
                                                                                                   aCCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCGGTAAATGGCTTGAATCAGc                                       >  1:59884/1‑143 (MQ=255)
                                                                                                   aCCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                       >  1:627172/1‑143 (MQ=255)
                                                                                                   aCCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                       <  1:1139337/143‑1 (MQ=255)
                                                                                                   aCCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCCTAAATGCCTTGAATCAGc                                       >  2:700710/1‑143 (MQ=255)
                                                                                                     cATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAGCAGCCt                                     >  1:175518/1‑143 (MQ=255)
                                                                                                          tCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAACGTTCGTGAATCAGCCTATTTa                                >  2:891693/1‑143 (MQ=17)
                                                                                                          tCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa                                >  1:939123/1‑143 (MQ=255)
                                                                                                          tCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATCTTTTCTCCCGTCACTGCCTTGAATCAGCCCATTTa                                >  2:866100/1‑143 (MQ=255)
                                                                                                          tCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATGTCATTTCTTCATGTTTGAGCCGCTTTTGTCTCCCGTACATGCCTTGAATCAGCCTCTTTa                                >  2:1035894/1‑143 (MQ=17)
                                                                                                            aaCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGTAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGa                              >  1:420959/1‑143 (MQ=255)
                                                                                                                gTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAcctt                          >  2:190696/1‑141 (MQ=255)
                                                                                                                  tGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGttt                        <  1:828239/143‑1 (MQ=255)
                                                                                                                     tGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttctt                     <  2:934621/143‑1 (MQ=255)
                                                                                                                      gtcAATGCTATGGGGGAATAGAAGGAAGGTGCGAAGAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                    <  1:74805/141‑1 (MQ=255)
                                                                                                                         aaTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTCCTTCGcc                 >  2:642662/1‑143 (MQ=255)
                                                                                                                            gCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAtt              <  2:939123/143‑1 (MQ=40)
                                                                                                                             cTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAttt             <  1:851422/143‑1 (MQ=40)
                                                                                                                              tATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTAAGTCATTTCATTTCTTCGTGTTTGAGCCGATGTTTTCTCCCGTCAACGCCTTGAATCAGCCACGTCAGCACGTTTCTTCGCCactca            >  2:1055621/1‑139 (MQ=14)
                                                                                                                                 gggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAgg         >  2:617078/1‑143 (MQ=37)
                                                                                                                                   gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCg       >  1:361771/1‑143 (MQ=35)
                                                                                                                                   gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGGTTCTTCGCCATTTAAGGCg       >  1:501574/1‑143 (MQ=25)
                                                                                                                                   gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATGTTTTCTCCCGTCAATGCATTGAACCCGCCAATTGAGACCCTTTCTTCGCAGTTTAATGCg       >  2:1159037/1‑143 (MQ=11)
                                                                                                                                    tGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGt      >  1:860529/1‑143 (MQ=34)
                                                                                                                                    tGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTATTCGTGTTAGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAACGTTTCTTCGCACTATAATGCGt      >  2:381209/1‑143 (MQ=11)
                                                                                                                                     gAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTGTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCCTTTAAGGCGtt     >  2:995695/1‑143 (MQ=18)
                                                                                                                                        tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATc  >  1:593046/1‑143 (MQ=31)
                                                                                                                                        tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGGAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATc  <  1:334543/143‑1 (MQ=14)
                                                                                                                                        tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAGTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAACTTCCGTGAATCAGCCTATTTAGACCGTTTCTTCGCCCTTTAAGGCGTTAta  >  2:782495/1‑142 (MQ=11)
                                                                                                                                             |                                                                                                                                         
TTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC  >  NC_000913/2288778‑2289056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.