Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 60 [0] [1] 61 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)57 (0.910) 44/268 0.4 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGT  >  NC_000913/258542‑258826
                                                                                                                                              |                                                                                                                                              
tgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa                                                                                                                                                <  2:155806‑M2/1‑1 (MQ=255)
tgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa                                                                                                                                                <  1:953371‑M2/1‑1 (MQ=255)
ggttaacaatgtgctaaattgtgccatgttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa                                                                                                                                                <  2:1138479‑M2/1‑1 (MQ=255)
      aaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa                                                                                                                                          <  2:682631‑M2/7‑1 (MQ=255)
       aatttgctaaattttgccaagttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaaa                                                                                                                                         <  2:996706‑M2/8‑1 (MQ=255)
            gctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa                                                                                                                                    <  2:250372‑M2/13‑1 (MQ=255)
             ctaaattttgtcaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                                                                                                                   <  2:451201‑M2/14‑1 (MQ=255)
             ctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                                                                                                                   <  1:1065426‑M2/14‑1 (MQ=255)
                aattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGa                                                                                                                                >  1:1080319‑M2/127‑143 (MQ=255)
                aattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGa                                                                                                                                >  1:1109612‑M2/127‑143 (MQ=255)
                        caatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtgaacacccgaagagcagattgatcaaaaaatttaccgcactaggcccggataatcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                                                                                                                        >  2:600458‑M2/119‑143 (MQ=255)
                        caatgtggtaaaacggttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                                                                                                                        <  2:1067458‑M2/25‑1 (MQ=255)
                          atttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagcttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg                                                                                                                      >  2:1115357‑M2/117‑143 (MQ=255)
                          atttggtaaaacagaagcaacacaacaggagatagcaatgacgtaaccgagtggacacccgaagagcagattgataaaaaaattaaccgcactacgcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg                                                                                                                      <  1:256697‑M2/27‑1 (MQ=255)
                                 aaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt                                                                                                               <  1:889621‑M2/34‑1 (MQ=255)
                                  aaacagttgcatcacaacaggagagagcaatgacgttaccgagtggacacccgaagagcagattgatccaaaaatttaccgcactaggcccgtatatgcgtgaaggtcAGTGCAAAGATAATCGATTCTTTTTCGATGTTCTg                                                                                                              >  1:204097‑M2/109‑143 (MQ=255)
                                    acagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc                                                                                                            <  1:1142088‑M2/37‑1 (MQ=255)
                                     cagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCt                                                                                                           <  1:976632‑M2/38‑1 (MQ=255)
                                      agttgcatcacaccaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaagttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTg                                                                                                          <  2:342215‑M2/39‑1 (MQ=255)
                                      agttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcaataggcccgcatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGGTTGTCTGGCTg                                                                                                          >  1:386604‑M2/105‑143 (MQ=255)
                                         tgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcacaaaagttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt                                                                                                       <  1:445046‑M2/42‑1 (MQ=255)
                                         tgcatcacaacaggagatagcaatgacggtaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt                                                                                                       <  1:1168374‑M2/42‑1 (MQ=255)
                                             tcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt                                                                                                   <  1:410179‑M2/46‑1 (MQ=255)
                                                     ggagatagcaatgacgtaaccgaggggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGa                                                                                           <  1:430652‑M2/54‑1 (MQ=255)
                                                      gagatagcaatgacgttaccgagtggacacccgaagagcagattgctcaaaaaatttaccgcactaggcacgtatattcgtgaaggtaAGTGCAAAGATACTCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGaa                                                                                          >  1:535355‑M2/89‑143 (MQ=255)
                                                             caatgacgttacggaggagacacccgaagagtagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCa                                                                                   <  2:160114‑M2/62‑1 (MQ=255)
                                                                  acgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGTGTGGACGTGAAACCGGACCCGGa                                                                              >  1:492912‑M2/77‑143 (MQ=255)
                                                                       accgagtggacacgcgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGc                                                                         <  1:616860‑M2/72‑1 (MQ=255)
                                                                       accgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTTAGCGTGAAACAGGCCCCGGGAATGc                                                                         >  2:186700‑M2/72‑143 (MQ=255)
                                                                               gacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGgacgggcgcaacttc                                                                 >  2:408464‑M2/64‑136 (MQ=255)
                                                                                acacccgaagagcagattgatcaaaaaatttaccgcactaggcacgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAGCGGAAGTGCGTGAATTCt                                                                >  1:770442‑M2/63‑143 (MQ=255)
                                                                                    ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgggg                                                            >  1:1137043‑M2/59‑143 (MQ=255)
                                                                                     cgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGACTTCAGGGGc                                                           >  1:599010‑M2/58‑143 (MQ=255)
                                                                                     cgaagagcagattgatcaaaaaatttaccgcactaggcccgaatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAACTCTGGGGc                                                           >  1:1197568‑M2/58‑143 (MQ=255)
                                                                                               actgatcaaaaaatttaccgcactaggcccgcatactcgtgaaggtaAGTGCAAAGATAATCGACTCTTTTTCTATTGTCTGGCTGTATGCGTCAACATGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatgg                                                 <  1:210948‑M2/96‑1 (MQ=255)
                                                                                                 tgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAg                                               >  1:568825‑M2/46‑143 (MQ=255)
                                                                                                 tgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAg                                               <  1:668408‑M2/98‑1 (MQ=255)
                                                                                                  gatcaaaaaatttaccgcactaggcccgtatatgcgtgaaggtaAGTGCAAAGATAATCGATGCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGc                                              <  2:341076‑M2/99‑1 (MQ=255)
                                                                                                   atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGCAGTGCGTGAATGCTGGGGCTGGTGGAGGGAGCt                                             >  2:384052‑M2/44‑143 (MQ=255)
                                                                                                    tcaaaaaatttactgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATAGTCTGGCTGTATGCGTCAACGTGAAACAGGAATACGAGATGCGTGAAGACTGATGCTGGTGGATGGAGCTg                                            >  2:1160045‑M2/43‑143 (MQ=255)
                                                                                                    tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCACAGATAATCGATTCTTTTACGATTGTCTGGCTGTATGCGGCAACGTGAAACCGGCACCGGAAGGGCGGAAACTACGGGGTCGGAGGATGGGGCTg                                            >  2:144307‑M2/43‑143 (MQ=255)
                                                                                                      aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTTGCTGTATGCGTCAACGTGTAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGCTGGagctcgc                                          >  2:477602‑M2/41‑140 (MQ=255)
                                                                                                      aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGa                                          >  1:18675‑M2/41‑143 (MQ=255)
                                                                                                      aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGa                                          >  1:281570‑M2/41‑143 (MQ=255)
                                                                                                      aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGa                                          >  1:829734‑M2/41‑143 (MQ=255)
                                                                                                      aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGa                                          >  1:829762‑M2/41‑143 (MQ=255)
                                                                                                      aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTATAGAGGTGGTGGATGGAGCTGGa                                          >  2:569611‑M2/41‑143 (MQ=255)
                                                                                                       aaaaattcaccgcactaggcccgcatattcgtgaaggtaAGTGCAAAGATAATCGACTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGaa                                         <  1:286420‑M2/104‑1 (MQ=255)
                                                                                                         acatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGCTTGTCATGCTGTATGCGTCAACCCGAAACCCGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAgc                                       <  1:276941‑M2/106‑1 (MQ=255)
                                                                                                            tttaccgcactcggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCGCCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCa                                    <  1:1145581‑M2/109‑1 (MQ=255)
                                                                                                            tctaccgcactaggcccgtatattcgtgaaggtaAGTGCAAACATAATCGCTTCTTTTTCGATTGTCTGGCTGTCTGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCa                                    <  1:460685‑M2/109‑1 (MQ=255)
                                                                                                             ttaccgcactaggcccgtatattcgtgaaggtgAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAGCCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAg                                   <  1:535587‑M2/110‑1 (MQ=255)
                                                                                                                   cactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATcc                             >  2:759868‑M2/28‑143 (MQ=255)
                                                                                                                       tagtccgtatattcgtgaagtcaAGTGAAAATATAATCGATTTTTTTTCGAGTGTCTGGCGGGATGCGTCAACGGGGAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtt                         <  1:913867‑M2/120‑1 (MQ=255)
                                                                                                                         gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtttt                       <  1:909981‑M2/122‑1 (MQ=255)
                                                                                                                                 attcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAg               >  1:875831‑M2/14‑143 (MQ=255)
                                                                                                                                  ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGt              >  2:448428‑M2/13‑143 (MQ=255)
                                                                                                                                      tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGCCTGGCTGTATGCGTCAACGTGAAACCGGCCCCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGACGCGCCGGAATCCCGTTTTACCTACCGTTccc          >  1:655798‑M2/9‑143 (MQ=255)
                                                                                                                                       gactgtaAGTGCAAAGATACTCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGGAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGAGCAGGAATCCCGTTTTACCTACAGTTACCa         <  2:314423‑M2/136‑1 (MQ=255)
                                                                                                                                          ggTAAGTGCAAAGTCAATCGATGCGTGTTCCATTGTCTGGCTGGATGCGTCAACGTGAAACCGGCACCGGAATGGCGTGAATTCTGGGGACACTAAACGTAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGtt      <  2:535355/143‑1 (MQ=255)
                                                                                                                                              aGTCCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAGGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGt  <  1:585248/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGT  >  NC_000913/258542‑258826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: