| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,380 | 1 | . | C | 97.0% | 76.9 / ‑5.0 | 34 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); major base C (20/12); minor base A (1/0); total (22/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
| * | NC_000913 | 4,296,380 | 2 | . | G | 97.1% | 80.2 / ‑4.0 | 34 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (21/12); total (22/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTA‑‑CCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAG > NC_000913/4296302‑4296513 || tAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTGTCAGGCCTATCTTAACCg > 1:767777/1‑143 (MQ=255) aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGAGTGATTTTGTAGGTCGGATAAGGCGTTTAAGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCATGCATATCTTAACCGt > 2:517686/1‑143 (MQ=11) cgcgTCTTATCAGGCCTACGCCGGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg < 1:445944/143‑1 (MQ=255) cgcgTCGTAGCAGGCGTACGCCAGCCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg < 1:514648/143‑1 (MQ=11) ttATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTA‑‑CGCCGTCTTTATTAATAGTGCCGAATGCGACACTAGCCGCGTCTTATCAGGCCTATCTTAACAGTAGGTTAAt > 1:534299/1‑143 (MQ=2) tATGAGGCCTAAGCCAGACAGCGCAATAGGCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtt < 1:137500/143‑1 (MQ=14) tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTCTCAGGCCTATCTTCACCGTTGGTCAAtttt > 1:593491/1‑143 (MQ=11) ccTACGCCAGACAGCGCAATAGCTTGATCCAGCGTCATTTTGTAGCTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CAGCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa < 2:1099413/143‑1 (MQ=14) ccTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAc > 2:140144/1‑124 (MQ=0) ccTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAc < 1:140144/124‑1 (MQ=2) tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAct > 1:167598/1‑143 (MQ=255) cgaGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc < 1:1141450/141‑1 (MQ=255) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATTAATGCCGGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc < 1:536288/143‑1 (MQ=17) cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTca > 2:382650/1‑143 (MQ=255) cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACAGTACGTTAATTTTTCAAAATCttta > 1:108794/1‑141 (MQ=14) aGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTGTTCAAACTCTTCACAccc > 2:156939/1‑143 (MQ=255) aGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGGTGGTTAATTTGTCAAACTCTTCACAccc > 2:157051/1‑143 (MQ=17) aTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTAACACCCGGTATc < 1:252001/143‑1 (MQ=255) gCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTATCCGTTGGTTACTTTTTCAAACTCTTCACACCCGGTATCaaa < 1:22134/143‑1 (MQ=18) ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGCATCAAAc > 1:922054/1‑143 (MQ=255) ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTGTTCAAACTCTTCACACCCGACATCAAAc > 2:234701/1‑143 (MQ=18) cTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAAcc > 2:13260/1‑143 (MQ=255) aTTTCGCGTGATTCTGCAGGTCTGACCAGGCCTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTACCAGTTTGTTTATTTTTCAAACTCTTCACACCCGGTATCAAACCCtt < 2:1132068/143‑1 (MQ=18) tgtAGCGGGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCACGTCTTATCAGACCTATCTTAACCGTTGGTTAATTTTTCAAACTCGTCAAACCCGGTATCAAACCCTTc > 1:339789/3‑143 (MQ=18) tAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATA‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTATTATCAGGCCTATCTTAACCGTGGGTTAGACTTTCAAATTCATCACAGCCGGTATCTAACGCTTCCa > 2:1120571/1‑143 (MQ=14) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGATATCAAACACTTCCATaa > 2:778526/1‑142 (MQ=21) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGCTGCGAAGCTTGCCGCGTCTTATCGGGCCTATCTTAACCGGTCGTTACCGCTTAACAGACTTAACACCCTGTATCAAACACTTCCATACTGCt > 2:238981/1‑143 (MQ=9) ttttGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGCTGGTTAATTTTTCAAACTCTTCACACCCGATATCAAAACCTTCTATAAAGcaa > 1:835701/1‑141 (MQ=18) tttGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACGCCCGGTATCAAACCCTTCCATACCCCTCa > 1:456800/1‑143 (MQ=21) ttGTAGGTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTACCCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTGTCAAACCCTTCCCTACCGCTccg > 1:825863/1‑141 (MQ=21) ggTCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTAGTAAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCa > 1:769802/1‑143 (MQ=25) tCGGATAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTACCCGTTGGTTAATTTTTCCAACTCTTCACACCCGGTATCAAACCCTACCATACAGCTCAGGTTCaaa > 1:129461/1‑142 (MQ=25) aTAAGGCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGt < 1:323390/143‑1 (MQ=255) ggCGTTTACGCCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAg < 1:833795/143‑1 (MQ=255) || TAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTA‑‑CCGCATC‑CGA‑CATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAG > NC_000913/4296302‑4296513 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |