| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 62 (0.970) | 22 (0.390) | 19/252 | 2.9 | 32.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 35 (0.620) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
CAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAC > NC_000913/1209463‑1209739 | cAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATGGCATTTCGGCCGGGTTGCTGTAGCAGCGCCTGAAGGCCGCGGGACCGGGGCACCAGCAGGTAAGGCAGAGcgt > 1:532950/1‑141 (MQ=255) gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAAGGCAGAGccttct < 1:717809‑M2/143‑7 (MQ=255) cAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc > 2:1035700‑M2/1‑136 (MQ=255) atttatttGTCGGATAAGTCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCCTTTCAGCCAGCCTGGTGGCGAAGTCGCTGAAGGCCACGGAACCGGGACGCCCACAGGTAATGCAGGGccttcaccc < 2:784928‑M2/143‑10 (MQ=255) gtgctataagcCTTTGCCACTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaag > 1:710889‑M2/6‑126 (MQ=255) tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACg > 1:457124/1‑143 (MQ=255) gggTAAGGCTTTGCCAGTTCCTGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtt > 2:372782‑M2/1‑123 (MQ=255) acacgCCTTTCCCAGTTCCGGGTAGTCTGCAGCAGAAGAAGCGGCCCCATTGCATTGCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGTGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTa < 2:973286/139‑1 (MQ=255) aTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtttt > 1:290422‑M2/1‑121 (MQ=255) ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga < 2:865636‑M2/143‑28 (MQ=255) ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCAGTTGAGCGAGCCTGTTGGCGGAGAGGCTGAAGGGCACGGAACCGGGACACCAACAGGTAATGCAGAGcctgctcccaagccgaggtcgtcgaga < 1:996970‑M2/143‑28 (MQ=255) cTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa < 1:421389/143‑1 (MQ=255) tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATga < 1:718968/143‑1 (MQ=255) gCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACCGGTCATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAAgaa > 1:140238/1‑143 (MQ=255) gCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCAGAGCATTACAGCCAACCTGTCGGCGGAGGCGCTGAAGGCCACGGAACCGGGACACCAACAGGGAATGCAGAGCCTGCTCCCAAACCAACGTTTATGAAAATgaa < 1:879425/143‑1 (MQ=255) aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagggtttcgagagccgtttg < 1:605541‑M2/143‑36 (MQ=255) ggtgcGGGTATGCGTCAGCAGAGAAAGCGGCACCATTGCATTGCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGaaa < 2:739717/139‑1 (MQ=255) ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTAACGCCAGCCTGTTGGCGAAGTGGCTGGAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca > 1:430153‑M2/1‑106 (MQ=255) ttCCGGGTATGCGTCAGCAGAAAAGGCGGGACCATTGGATTTCAGCCAGCCTGTTGGCGGAGGGGCGGAAGGCCACCGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAt < 2:622456/143‑1 (MQ=255) gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt < 1:1080859‑M2/143‑42 (MQ=255) ggTATTCTGCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCGTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa < 2:881457/143‑1 (MQ=255) tATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcagtttgcacagtgcc < 1:1023556‑M2/143‑45 (MQ=255) cagcagAAAAAGCGGCACCATTGCATTTCCGCCAGCCTGTTGGCGGAGTGGCTGAACGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAAGAAGACATAACAAGCAAATGGc > 2:166228/1‑143 (MQ=255) aGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCAACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCTACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg < 1:567588/143‑1 (MQ=255) gCGGCACCATTGCATTTCGGCCAGCCTGTTGGCGGAGTGGCCGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:892885/143‑1 (MQ=255) gCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcc < 2:324702‑M2/143‑63 (MQ=255) cGGCACGATTGCATTCCAGCCAGCCTGCTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt < 2:870383/143‑1 (MQ=255) gCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACACGCAAATGGCATCATTCCTGCttt > 2:851508/1‑143 (MQ=255) cACCATTGCATTTCTGCCAGCCTGTTGGCGGCGTGGCTGGAGGCCACGGAACCGGGACACGTACAGGTAATGCAGGGccttctcccaaaccaaggtttgcgagagccgtttgcacagtgccatccgatttgatatcgccaaac > 2:847909‑M2/1‑77 (MQ=255) cACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggatttcgagagccgtgtgcacagtgccgtccgacttggtatcgcccaac < 1:407182‑M2/143‑67 (MQ=255) cATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGCTTATGAAAATGAAGAAATAACAAGCACATGGCAGCACTCCTGCTTCTAca > 2:876233/1‑142 (MQ=255) ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttctcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggatt < 2:263125‑M2/143‑72 (MQ=255) gtaTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 2:24203/141‑1 (MQ=255) gCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 2:803290/143‑1 (MQ=255) gCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGACCACTAACAGGTAATGCAGAGTCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 2:819333/143‑1 (MQ=255) cATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattctt > 1:1071460‑M2/1‑69 (MQ=255) cATTGCAGCCAGCCTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACGGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagggccatccgatttgatatcgccaaacggattctt > 2:823505‑M2/1‑69 (MQ=255) cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggc > 2:1132784‑M2/1‑64 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTAACCAGGGGGATGTAAc > 2:170365/1‑143 (MQ=255) cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa < 1:191873/143‑1 (MQ=255) gccGGTTGGCGGCGTGGCTGAAGGCCACGGAACCGGGACACCAACCGGTAATGCAGAGccttctccccaaccaaggtcttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaaca > 2:1160754‑M2/1‑58 (MQ=255) tggcggagtggcggagGGCCACGGAACCGGGACACCAACAGGTAATGGAGAGCCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt < 2:916753/143‑1 (MQ=255) tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt < 1:198797/143‑1 (MQ=255) gggCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt < 1:1109689/142‑1 (MQ=255) cTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgca < 2:1019494‑M2/143‑103 (MQ=255) tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcgg < 1:779919‑M2/143‑104 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCACCCCACGAACCGTTTGTGAAACAGAACAAATACCAAGCAAATGGAATGACTCCTGCTCCTAACAGGGCGCGTTAACAAGCTTATTGGCCAAGTAcgcctctc > 2:458889/1‑138 (MQ=255) ccACGGAACCGGGACACCTACTGGTAATGCAGAGCCTTCTACCAAACCAACGGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTCCGCGTATca < 2:885393/143‑1 (MQ=255) gcaCCGGGACACCAACAGGTAATCCAGAGCCTTCTCCCCAACCAACTTTTATGAAAATGAATAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa < 1:450254/141‑1 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATg > 1:933644/1‑143 (MQ=255) ccGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTTGCTATGTACGCGTATCAACAACTGa > 1:310560/1‑143 (MQ=255) cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc > 1:810969/1‑143 (MQ=255) gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGAATCAACAAATGAcc < 2:717809/143‑1 (MQ=255) gACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAg > 1:768047/1‑143 (MQ=255) cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 1:474354/143‑1 (MQ=255) cacCAACAGGGAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCACGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 2:1137496/143‑1 (MQ=255) acCAACAGGTAATGCAGAGCCTTCTCCCGTAGTAAGGTTGATGAAAATGAAGAAGTAACAAGCAAATGGCATCATTCCTGCGTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAGCAAATGACCAGAac > 1:854814/1‑143 (MQ=255) cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccc < 1:791529‑M2/143‑127 (MQ=255) aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttct > 1:865636‑M2/1‑13 (MQ=255) aaTTCACAGCCTTCTCCCAAACCAACTTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGTTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACTCGTATCAACAAATGACCAGAACACAGATCTAc < 2:172914/143‑1 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtacgtaactggtcgtgccgccccgtctccaggct < 2:273078‑M2/143‑138 (MQ=255) | CAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAC > NC_000913/1209463‑1209739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |