breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (lowest skew 10 of 14 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4522458 =137 (1.070)3 (0.020) 3/408 NT 2.2% coding (1637/1968 nt) yjhG putative dehydratase
?NC_000913 4522501 = 132 (1.080)coding (1594/1968 nt) yjhG putative dehydratase
* ? NC_000913 3736656 =187 (1.460)3 (0.020) 3/408 NT 1.6% coding (522/825 nt) bax putative glucosaminidase
?NC_000913 = 3736652 183 (1.500)coding (526/825 nt) bax putative glucosaminidase
* ? NC_000913 = 3577772172 (1.340)4 (0.030) 4/428 NT 2.3% coding (955/996 nt) gntR d‑gluconate inducible gluconate regulon transcriptional repressor
?NC_000913 3652036 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 3424750148 (1.180)5 (0.040)
+TCTTCTTC
5/392 NT 4.1% noncoding (2034/2904 nt) rrlD 23S ribosomal RNA of rrnD operon
?NC_000913 = 4039547 94 (0.750)noncoding (2029/2905 nt) rrlA 23S ribosomal RNA of rrnA operon
* ? NC_000913 3263132 =136 (1.060)3 (0.020) 3/406 NT 2.4% coding (529/1209 nt) tdcD propionate kinase/acetate kinase C, anaerobic
?NC_000913 3263186 = 113 (0.930)coding (475/1209 nt) tdcD propionate kinase/acetate kinase C, anaerobic
* ? NC_000913 3220237 =99 (0.770)4 (0.030) 4/408 NT 3.3% coding (744/1380 nt) patA putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent
?NC_000913 3220409 = 138 (1.130)coding (916/1380 nt) patA putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent
* ? NC_000913 2791462 =117 (0.910)3 (0.020) 3/414 NT 2.8% coding (190/1449 nt) gabD succinate‑semialdehyde dehydrogenase I, NADP‑dependent
?NC_000913 2791493 = 99 (0.800)coding (221/1449 nt) gabD succinate‑semialdehyde dehydrogenase I, NADP‑dependent
* ? NC_000913 = 2713829140 (1.090)4 (0.030) 4/406 NT 2.8% coding (934/1335 nt) srmB ATP‑dependent RNA helicase
?NC_000913 = 2713908 142 (1.170)coding (1013/1335 nt) srmB ATP‑dependent RNA helicase
* ? NC_000913 = 2643100128 (1.000)5 (0.040) 5/400 NT 3.8% intergenic (‑256/+29) rodZ/rlmN MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent
?NC_000913 = 2643110 136 (1.130)intergenic (‑266/+19) rodZ/rlmN MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent
* ? NC_000913 1729156 =113 (0.880)3 (0.020) 3/410 NT 2.6% coding (70/4617 nt) lhr putative ATP‑dependent helicase
?NC_000913 1729218 = 116 (0.940)coding (132/4617 nt) lhr putative ATP‑dependent helicase