New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 204746447 (0.960)4 (0.090) 4/266 6.6 7.7% coding (2527/7077 nt) yeeJ putative adhesin
?NC_000913 = 2047546 52 (1.130)coding (2609/7077 nt) yeeJ putative adhesin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGCAAAAACGGATGTTAATGGTCTGGCGACTTTTGATCTGAAAAGTAGTAAGCAGGAAGACAACACGGTTGAAGTCACCCTTGAAAATGGCGTGAAACAAACGTTAATCGTCAGTTTTGTCGGCGACTCGAGTACTGCGCAGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2047318‑2047464
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggttgCCTTTTGCATCCCGGACGGTCGCGGTCATTGTGACGCTGTCATTGCCGTCAGCAACCACTTCATTTTTCGACTTCTGCAGATCAACCTGCGCAGTACTCGAGTCGCCGACAAAACTGACGATTAACGTTTGTTTCA  <  NC_000913/2047546‑2047411
                                                                                                                                                                                                                                                                                           
CCGGAAAAACGGATGTTAATGGTCTGGCGACTTTTGACATCAAAAGTAGGAAGCAGGAAGACAACACGGTTGAAGTCACCCTTGAAAATGGCGTGAAACAAACGTTAATCGTCAGTTTTGTCGGCGATTCGAGTACTGCGCAG                                                                                                                                              <  2:349949/143‑1
 CGCAAAAACGGATGTTAATGGTCTGGCGACTTTTGATCTGAAAAGTAGTAAGCAGGAAGACAACACGGTTGAAGTCACCCTTGAAAATGGCGTGAAACAAACGTTAATCGTCAGTTTTGTCGGCGACTCGAGTACTGCGCAGG                                                                                                                                             >  1:719918/1‑143
                                                                CACGGTTGAAGTCACCCTTGAAAATGGCGTGAAACAAACGTTAATCGTCAGTTTTGTCGGCGACTCGAGTACTGCGCAGGTTGCCTTTTGCATCCCGGACGGTCGCGGTCATTGTGACGCTGTCATTGCCGTCAGCAACCACT                                                                              >  2:685216/1‑143
                                                                                               aacCAAACGTTCATCGTCAGTCTTGTCGGCGACTCGAGTACTGCGCAGGTTGCCTTTTGCATCCCGGACGGTCGCGGTCATTGTGACGCTGTCATTGCCGTCAGCAACCACTTCATTTTTCGACTTCTGCAGATCAACCTGCG                                               <  1:340428/140‑1
                                                                                                      CGTTAATCGTCAGTTTTGTCGGCGACTCGAGTACTGCGCAGGTTGCCTTTTGCATCCCGGACGGTCGCGGTCATTGTGACGCTGTCATTGCCGTCAGCAACCACTTCATTTTTCGACTTCTGCAGATCAACCTGCGCAGTACT                                        <  1:685216/143‑1
                                                                                                                                      cttggGCAGGTTGCGCTTTGCACCCCGGACGCGCGCGGTCATTGTGACGCTGTGATTGCCGTCAGCAACCACTGCATTTTTCGACTTCTGCAGATCAACCTGCGCAGTACTCGAGTCGCCGACAAAACTGACGATTAACGTTT        <  2:552374/138‑1
                                                                                                                                       tTGCGCAGGTTGCCTTTTGCATCCCGGACGGTCGCGGTCATTGTGACGCTGTCATTGCCGTCAGCAACCACTTCATTTTTCGACTTCTGCAGATCAACCTGCGCAGTACTCGAGTCGCCGACAAAACTGACGATTAACGTTTG       <  2:468789/142‑1
                                                                                                                                            CAGGTTGCCTTTTGCATCCCGGACGGTCGCGGTCATTGTGACGCTGTCATTGCCGTCAGCAACCACTTAATTTTTCGACTTCTGCAGATCAACCTGCGCAGAACTCGAGTCGCCGACAAAACTGACGAGTAACGGTTGTTTCA  >  2:552185/1‑143
                                                                                                                                                                                                                                                                                           
CCGCAAAAACGGATGTTAATGGTCTGGCGACTTTTGATCTGAAAAGTAGTAAGCAGGAAGACAACACGGTTGAAGTCACCCTTGAAAATGGCGTGAAACAAACGTTAATCGTCAGTTTTGTCGGCGACTCGAGTACTGCGCAGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2047318‑2047464
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggttgCCTTTTGCATCCCGGACGGTCGCGGTCATTGTGACGCTGTCATTGCCGTCAGCAACCACTTCATTTTTCGACTTCTGCAGATCAACCTGCGCAGTACTCGAGTCGCCGACAAAACTGACGATTAACGTTTGTTTCA  <  NC_000913/2047546‑2047411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.