Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 3,553,103 IS5 (+) +4 bp coding (19‑22/2706 nt) malT → mal regulon transcriptional activator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2288919 =NA (NA)47 (0.960) 36/282 0.3 95.8% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 3553103 = 2 (0.040)coding (19/2706 nt) malT mal regulon transcriptional activator
* ? NC_000913 = 2290113NA (NA)69 (1.420) 41/280 0.2 98.5% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 = 3553106 1 (0.020)coding (22/2706 nt) malT mal regulon transcriptional activator

AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGA  >  NC_000913/2289972‑2290255
                                                                                                                                              |                                                                                                                                              
aaGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCa                                                                                                                                               >  1:884245/1‑143 (MQ=11)
    aaaTCTCTTTTCTGGTCTGACGGCGCTTCCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAAc                                                                                                                                           <  2:612498/143‑1 (MQ=18)
         tctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATCTCAGGGACTTGTCAGCCCCTTGTATAACGCTGt                                                                                                                                      >  2:96617/1‑143 (MQ=11)
         tcgtttCTGGTCTGACGGCGCTTACTGCTGGATTCGCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAAAGATGt                                                                                                                                      <  2:155065/140‑1 (MQ=11)
            tttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCGATAACGCTGTAGc                                                                                                                                   >  1:788407/1‑143 (MQ=38)
            tttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGCACTTGTTCTCACCTTCCATAACGCTGTAGc                                                                                                                                   >  1:506937/1‑143 (MQ=255)
             ttgtGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGcc                                                                                                                                  <  1:802562/140‑1 (MQ=255)
              tCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGAGGACAAACATGATCTCATATCAGGGACTTGGTGGCACCTTCCATAACGGGGTAgggc                                                                                                                                 >  2:658783/1‑140 (MQ=11)
                    cTGACGGTGCTTACGGCTGAATTCACTGTGGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGaa                                                                                                                           <  2:781579/143‑1 (MQ=255)
                     tGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTGGATGACTCATGATGAACCCTGTTCTATGGCTGCAGATGACAAACATGCTCTCATATCAGAGACCTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAAc                                                                                                                          >  2:67120/1‑143 (MQ=14)
                     tGACGGCGCGTACTGCTGGATTCGGTGTCGGCGGTGGTGTGTTGATGGCTGATGGTGTTTCTTGTTCTGTGGCTCCAGATGACAAACATGATCTCATATCAGGGTCTTCTTAGCACCTTCCATAACGCTGTAGCCACCAGAAc                                                                                                                          <  2:226043/143‑1 (MQ=12)
                              ttACTGCTGAATGCGCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATCGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGc                                                                                                                 <  2:737247/143‑1 (MQ=255)
                               tACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCg                                                                                                                <  1:636660/143‑1 (MQ=255)
                                  tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACCTGATCTCAGATCAGCGCCTACTTCGCACCTTCCATAACGCTGTAGCCCCCAGAACCGATATTGCGGaa                                                                                                             >  2:666348/1‑143 (MQ=17)
                                    ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCCTCCATAACGCTGTAGCCACCAGAACAGATATCGCGGAACg                                                                                                           >  2:707567/1‑143 (MQ=255)
                                     tgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGACCAGATATTGCGGAACgc                                                                                                          >  1:671301/1‑142 (MQ=255)
                                         ttCACTGTCGGCTAAGGTAAGTTGATGCCTCATGCTCAACCCATTCCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACaaa                                                                                                      <  1:602413/143‑1 (MQ=18)
                                            aCTGTCGGCGAAGGTAAGTTGATGACACATGATGAACCCTGTTCTATGGCTCCAGATGACAAACAGGATCACATGTCAGGGACTTGTTCGCAACGAACAAAACGCCGTAGCCACCAGAATAGATATTCCGACACGACAAacag                                                                                                   >  2:391342/1‑143 (MQ=14)
                                              tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATCACGCTGTAGCCACCAGAACAGCTAGTGCGGAACGACAAAGAGaa                                                                                                 >  2:792787/1‑143 (MQ=255)
                                               gggggCGAAGGGAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaaa                                                                                                <  2:170687/140‑1 (MQ=255)
                                                tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGcc                                                                                                                                  <  2:239260/108‑1 (MQ=255)
                                                tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGcc                                                                                                                                  >  1:239260/1‑108 (MQ=255)
                                                tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAAc                                                                                               >  2:118511/1‑143 (MQ=255)
                                                    cGAAGGGAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGaa                                                                                           <  2:401484/143‑1 (MQ=255)
                                                         gTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCGCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACCAAGAGCGACAGACCCAGa                                                                                      >  1:109625/1‑143 (MQ=21)
                                                         gTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGa                                                                                      >  1:634066/1‑143 (MQ=255)
                                                             gTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAACGAGAAACAGAACCAGATTGa                                                                                  >  2:23670/1‑143 (MQ=255)
                                                                 atgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCa                                                                              >  1:80538/1‑143 (MQ=255)
                                                                     cTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGa                                                                          <  1:743695/143‑1 (MQ=255)
                                                                      tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACCAAGAGAAACAGAACCAGATTGATGCATTGAg                                                                         >  2:69161/1‑143 (MQ=255)
                                                                        atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGAGATTGCGGAACGACAAGGAGAAACAGAACCAGATTGATGCATTGAGCt                                                                       >  1:378093/1‑143 (MQ=255)
                                                                                cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACGAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCt                                                               >  2:767872/1‑143 (MQ=255)
                                                                                        tATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaatt                                                       >  2:718789/1‑143 (MQ=255)
                                                                                         aTGGCTCCAGATGACAAACATGATCACATATGAGGGAGGTGTTCGCACCTTACATCACGCTGTAGCCAACAGAACAGATATTGCGGAACGACAAAGAGACACAGAACCAGGTTGATGCAGTGAGCTTTCATCCTACGAaattc                                                      >  2:58673/1‑142 (MQ=37)
                                                                                           ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaattaat                                                    <  1:369751/143‑1 (MQ=255)
                                                                                               ccAGAAGACAATCGTGATCTCATATCAGCGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGAGATTGCGGAACGACAAAGAGAAACAGAACCAGCTTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCt                                                <  2:332069/143‑1 (MQ=255)
                                                                                                cAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCCGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTg                                               <  1:645638/143‑1 (MQ=255)
                                                                                                  gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGtt                                             >  1:425709/1‑143 (MQ=255)
                                                                                                    tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa                                           >  1:534539/1‑143 (MQ=255)
                                                                                                      atgaaCACGAACTCATACCAAGAATCTTGTCGTACCTTACATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa                                         <  2:711241/140‑1 (MQ=255)
                                                                                                      aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa                                         <  1:668473/143‑1 (MQ=255)
                                                                                                        aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGc                                       >  1:755353/1‑143 (MQ=255)
                                                                                                        aaaCATGATCTCATATCAGGGACTTGTTCGCACCCCCCCCCACCCCGTAGCCACCAGAACAGATACTGCCCCACGACAAAGAGAAACAGCACCACATCGATGCATCCAGCTTTCAGCCTACGAAATTAATTCCTCTTACAAGc                                       >  2:486828/1‑143 (MQ=19)
                                                                                                        aaaCATGATCTCATATCAGGGACTTGGTCGTGTTAGTCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTCAAAAGc                                       >  2:316237/1‑143 (MQ=255)
                                                                                                        aaaCATGATCTCATATCAGGGACTGGTACAGAACAAGGTAAAGGTTGTAGGCACCAGAACAGATATGGCGGAAGTGGAGAGATTGACGGGACCAGATGGATGGATTGAGCTTTCGTCCTGTGAAATTAATCGCTGGTAAAAGc                                       >  2:357913/1‑143 (MQ=255)
                                                                                                                  tcATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACa                             >  2:78291/1‑143 (MQ=255)
                                                                                                                       tCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTAGGAAATTAATTGCTGGTAAAAGCATTGGGGACAGaaaa                        >  1:418648/1‑143 (MQ=255)
                                                                                                                        cAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAAt                       >  2:755305/1‑143 (MQ=255)
                                                                                                                         aGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATa                      >  2:832385/1‑143 (MQ=255)
                                                                                                                                ttGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATa                >  1:743726/1‑143 (MQ=255)
                                                                                                                                   ttCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACCGAACCAGATTGATGCATTGAGCTTTCATCCTATCAAATTAATTGCTGTTAAACGCATTGGGCACAGACGATACCCATAGCt             >  2:608904/1‑143 (MQ=255)
                                                                                                                                   ttCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCt             >  1:374765/1‑143 (MQ=255)
                                                                                                                                    tCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATAATGCGAAAAGACCAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCAACCTAGGAAAATAATTGCTGTCAAAAGCATTGGGGACAGAAAATACCAAGAGCta            >  2:351926/1‑142 (MQ=255)
                                                                                                                                        aCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATa        >  2:694069/1‑143 (MQ=255)
                                                                                                                                         ccTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCAGCCTATGAAATTAATGGCTGTTAAAAGCATTGGGTACAGAAAAGACCCATCGCTCCATaa       >  1:781743/1‑142 (MQ=255)
                                                                                                                                              cATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGa  <  1:536517/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGA  >  NC_000913/2289972‑2290255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.