Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503 1979278 776 60 [0] [0] 61 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)56 (1.220) 46/266 0.0 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTAT  >  NC_000913/1979141‑1979421
                                                                                                                                          |                                                                                                                                               
ctttacactcatctaagatttctcccaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcctgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                             <  1:849327‑M2/5‑1 (MQ=255)
    acacttatctaagatttttcctaaatcgacgccactgtactcgtcactacacgcacataaaacggacgggggctgcgattttcaataatgagcgatgcagaccacacaaaacactcaactacttaacataaatgTATACGtcc                                                                                                                                         >  2:400389‑M2/135‑142 (MQ=255)
    acacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacaccaaattaatgaacataaatgTATAACTCa                                                                                                                                         >  2:124871‑M2/135‑143 (MQ=255)
              aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatcaatgTATAAGTCATACttttgtt                                                                                                                               >  1:137202‑M2/125‑143 (MQ=255)
              aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtt                                                                                                                               >  2:678188‑M2/125‑143 (MQ=255)
                  tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATACGTCATACTTTTATCTTgg                                                                                                                           >  2:40855‑M2/121‑143 (MQ=255)
                    tttcctaactctacgcaactgtactcctcactacacgcacatacaacggaggggggctgcgattttcaacaatgcgtgatgcagatcacacaaaactctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                                                                         <  1:264479‑M2/25‑1 (MQ=255)
                    tttcctaaatcgacggaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                                                                         >  2:750568‑M2/119‑143 (MQ=255)
                        ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgctgcagatcacacaacacactcaattacttaacataaatgTATAAGCCATACTTTTGTTTTTGGTGTAt                                                                                                                     >  2:706852‑M2/115‑143 (MQ=255)
                         taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                                                                    <  1:698311‑M2/30‑1 (MQ=255)
                              cgacgcgactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                               <  2:201025‑M2/35‑1 (MQ=255)
                                acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgggtgatgcagatcacacaaaacactcaattactttacatcaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                                                             <  1:386066‑M2/37‑1 (MQ=255)
                                acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTCTAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                                                             >  2:298868‑M2/107‑143 (MQ=255)
                                  gcaactgtgctcgtcactccacgcacatccagcggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                           <  2:661427‑M2/39‑1 (MQ=255)
                                      ctgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatcaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa                                                                                                       >  2:21531‑M2/101‑143 (MQ=255)
                                       tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCATTCTGTTagaa                                                                                                      >  2:433473‑M2/100‑143 (MQ=255)
                                             cgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                                                                <  1:754755‑M2/50‑1 (MQ=255)
                                             cgtcactacacgcacatacaacggagggagactgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                                                                <  2:697935‑M2/50‑1 (MQ=255)
                                              gtgggttcacccacatgcttcggaggatggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                               <  1:641997‑M2/51‑1 (MQ=255)
                                              gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgctgatcacacataacactcaagtacttaacataaatgTAGAAGTCATACTTCTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                               <  2:587872‑M2/51‑1 (MQ=255)
                                                cactacacgcacatacaccggaggggggctgctattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                                                             <  1:551761‑M2/53‑1 (MQ=255)
                                                      acgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                                                                       <  1:850288‑M2/59‑1 (MQ=255)
                                                        gcacatacaacggaggggggctgcgattttcaatgctgcgtgatgcagatcacacaaaacactcaagtacttaacataaatgTATACGTCATACTTTTGTTTTCGGTGTATTTCAATCTGGTCAAACGGTGTtcgctacgctc                                                                                     >  2:683705‑M2/83‑142 (MQ=255)
                                                          acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                                                                   >  2:525342‑M2/81‑143 (MQ=255)
                                                            atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                                                                 <  1:649128‑M2/65‑1 (MQ=255)
                                                              acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagc                                                                               >  1:394126‑M2/77‑143 (MQ=255)
                                                              acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagc                                                                               <  1:818903‑M2/67‑1 (MQ=255)
                                                                 acggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaa                                                                            <  1:458103‑M2/70‑1 (MQ=255)
                                                                  cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa                                                                           <  1:750568‑M2/71‑1 (MQ=255)
                                                                  cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa                                                                           >  1:63542‑M2/73‑143 (MQ=255)
                                                                   ggggtggggctgcgcttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                          <  2:74150‑M2/72‑1 (MQ=255)
                                                                        ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                     <  1:632453‑M2/77‑1 (MQ=255)
                                                                        ggggcagtgttttttaataatacgtgatgcagatcacagaaaacactggattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTGTCGCTACGCTAGCAAGCAAAAATGaaa                                                                     <  2:680490‑M2/77‑1 (MQ=255)
                                                                            ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAACATGAAACAgg                                                                 >  2:781424‑M2/63‑143 (MQ=255)
                                                                                      caataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa                                                       >  1:43729‑M2/53‑143 (MQ=255)
                                                                                      caataatacgtgatgcagatcacacaaaacactcaattacttaacataaatgGATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa                                                       <  1:573618‑M2/91‑1 (MQ=255)
                                                                                       aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa                                                      >  1:84045‑M2/52‑143 (MQ=255)
                                                                                       aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTCTCGCTACGCTAGCAAGCCAAAATGAAACAGGAATAATCGaaa                                                      >  1:373774‑M2/52‑143 (MQ=255)
                                                                                            tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa                                                 <  1:771690‑M2/97‑1 (MQ=255)
                                                                                              cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg                                               >  1:612113‑M2/45‑143 (MQ=255)
                                                                                                tgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt                                             <  2:63542‑M2/101‑1 (MQ=255)
                                                                                                  atgaagatcacacaaaacacccaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgc                                           <  1:864461‑M2/103‑1 (MQ=255)
                                                                                                    gcggatcacacataaccctcatctacttaacctaaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAGCTGTTAAAAAGTTTTTCGTTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGGAATGGGATGTTgcgc                                         <  2:749018‑M2/105‑1 (MQ=255)
                                                                                                     cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTCTTGTTTTGGGTGTATTTAAATCTGTTAAAAAGTTTTTCGCTACGCCAGCAAGAAAAAATGCAACAGGAATAATCAACACGGGACGTCCCGca                                        >  2:743172‑M2/38‑143 (MQ=255)
                                                                                                       gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                      <  1:626493‑M2/108‑1 (MQ=255)
                                                                                                        atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAg                                     >  1:826456‑M2/35‑143 (MQ=255)
                                                                                                             acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                               >  1:28461‑M2/30‑143 (MQ=255)
                                                                                                             acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                               >  1:90121‑M2/30‑143 (MQ=255)
                                                                                                               aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCGACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt                             <  2:537616‑M2/116‑1 (MQ=255)
                                                                                                               aaaacactcaattactcaccataaatgTATAAGGTATAGTTTTGTTTTGAGTGCAGTTCAATCTGTTAAAATGTTTTTAGCCACGCGAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt                             <  2:312046‑M2/116‑1 (MQ=255)
                                                                                                                aaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGAAAAACTGAAACAGGAATAATCGAAATTCGATGTTGCGCACAGTAcaaaaa                             >  2:832033‑M2/27‑142 (MQ=255)
                                                                                                                 aacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                           <  1:438421‑M2/118‑1 (MQ=255)
                                                                                                                        aataacttaacataaatgTATAAGTCATCCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATGGAACTGGGATGTTGCCGACCGTCAAAATACCACACCg                    >  2:775781‑M2/19‑143 (MQ=255)
                                                                                                                           tacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa                 <  1:652949‑M2/128‑1 (MQ=255)
                                                                                                                              ttaacattaatgTATAAGTCATACTTTTGTGTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata              <  2:439240‑M2/131‑1 (MQ=255)
                                                                                                                                 acataaatgTATAAGTCATACTGTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc           <  2:453320‑M2/134‑1 (MQ=255)
                                                                                                                                   ataaatgTATAAGTCATACTTTTGTTTTTGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAACCAGGAATAATCGAAATGGGATGTTGCGGACAGTCAAAATAACCCACCGTAAATAatcat         <  2:489087‑M2/136‑1 (MQ=255)
                                                                                                                                    taaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcatc        >  1:204030‑M2/7‑143 (MQ=255)
                                                                                                                                     acatgTAGAAGTCAGACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGCTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCt       <  1:683705‑M2/138‑1 (MQ=255)
                                                                                                                                     aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCt       >  2:91317‑M2/6‑143 (MQ=255)
                                                                                                                                          tataAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtat  <  1:660275/143‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                               
GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTAT  >  NC_000913/1979141‑1979421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.