Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908 258683 776 44 [0] [0] 45 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)43 (0.930) 37/266 0.2 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

TGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT  >  NC_000913/257766‑258042
                                                                                                                                             |                                                                                                                                       
tgtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa                                                                                                                                        >  2:19607‑M1/1‑142 (MQ=255)
tgtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa                                                                                                                                        <  1:81218‑M1/143‑2 (MQ=255)
      aaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATGTTCGTGAAGGTAagtgaaa                                                                                                                                  >  2:442331‑M1/1‑136 (MQ=255)
             cTAACTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat                                                                                                                           <  1:268455‑M1/143‑15 (MQ=255)
                   tttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc                                                                                                                     <  1:237161‑M1/143‑21 (MQ=255)
                   tctgcCACTGTCGTAAAACACTTGCATCACAACAGGAGATAGCAAGGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTCGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc                                                                                                                     <  1:266230‑M1/141‑21 (MQ=255)
                       ccAATTTGGTAAAACAGTTGCATCATACATCAACACATCAAAGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt                                                                                                                 >  2:728866‑M1/1‑119 (MQ=255)
                        cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                >  1:709758‑M1/1‑118 (MQ=255)
                        cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                >  2:420440‑M1/1‑118 (MQ=255)
                         aaTCTGCTAAAACAGTCGCCTCACAGCAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCATAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                               <  2:27206‑M1/143‑27 (MQ=255)
                          aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattgtttttcg                                                                                                              >  2:672749‑M1/1‑116 (MQ=255)
                           tttGGTACAAGAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                             <  2:96716‑M1/143‑29 (MQ=255)
                             tGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCATTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt                                                                                                           <  2:268883‑M1/143‑31 (MQ=255)
                                 aaaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                       <  1:819084‑M1/143‑35 (MQ=255)
                                   aaCAGGTGCAGCACACCAGGAAATAGCAATGACGTTACCAAGTGGACACCCGAAGAGCAGATTGTTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                     <  2:608507‑M1/143‑37 (MQ=255)
                                     cAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                   <  1:135814‑M1/143‑39 (MQ=255)
                                               acaacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtca                                                                                         >  1:707692‑M1/1‑95 (MQ=255)
                                                ccacaggGGATAGCGAGGACGTGACCGAGCGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCGCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatgctttttcgattgtctggctgtatgcgtcaa                                                                                        <  2:258667‑M1/141‑50 (MQ=255)
                                                caacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaa                                                                                        >  1:180865‑M1/1‑94 (MQ=255)
                                                   caGGGGATAGCAATGACGTGACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATGTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtctgcgtaaacgt                                                                                     <  2:679160‑M1/143‑53 (MQ=255)
                                                      gagaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtgtgcgtcaacgtgaa                                                                                  >  1:335415‑M1/1‑88 (MQ=255)
                                                      gagaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGGATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatggtacaacgtgaa                                                                                  >  2:627641‑M1/1‑88 (MQ=255)
                                                       agaTAGCAATGACCATACCGAGGGCACACACGAAGAGCAGATTGACAACAAAATTTACCGCACTAAGCCCGTCTATTCGTGAAGGTAagtgcaaagataatcgatccttgttcgattgtctggctgtatgcgtcaacgtgaat                                                                                 <  1:80878‑M1/143‑57 (MQ=255)
                                                          tAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgacacca                                                                              >  2:882809‑M1/1‑84 (MQ=255)
                                                                    gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagaccaaagatagacgagtctttttcgattgtctggctgtatgcgtcaaagggaaaccggcaccggaag                                                                    >  2:102522‑M1/1‑74 (MQ=255)
                                                                      tACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtg                                                                  >  1:516209‑M1/1‑72 (MQ=255)
                                                                       agcgaGTGTACACCCGTGGGGCAGATTGATCAAACATTTTACCGGACTAGGCGCGTCTATTGGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgc                                                                 <  2:266945‑M1/141‑73 (MQ=255)
                                                                               gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattc                                                         >  1:171589‑M1/1‑63 (MQ=255)
                                                                                 cacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg                                                       <  1:742162‑M1/143‑83 (MQ=255)
                                                                                 cacCCGAAGAGCAGATTGATCAAAAAATTTACCGAACTAGGCCCGTATATGCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg                                                       <  2:763868‑M1/143‑83 (MQ=255)
                                                                                      ggagaggaGATGGAGCAAAAAATTTACCGCCCTAGGCCCTTATATTCGTGAAGGTAagtgcaaagatattcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggct                                                  <  1:425210‑M1/141‑88 (MQ=255)
                                                                                         gagCAGATTGATCAAAAAATTTTCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt                                               <  1:25369‑M1/143‑91 (MQ=255)
                                                                                         gagCAGAGTGATGCAAAAATTTACCGCACTGGGCCCGTATATTCGTGGAGGTAagtgcaaagataatcgagtgtgtggcgatggtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt                                               <  2:820809‑M1/143‑91 (MQ=255)
                                                                                            cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGGGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggacgtgcgtgaattctggggctggcgga                                            >  2:377272‑M1/1‑50 (MQ=255)
                                                                                             aGATTGATCAAAAAATGGACCGCACTAGGCCCGGAGATGCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggcggat                                           <  1:224074‑M1/143‑95 (MQ=255)
                                                                                                  gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagc                                      <  1:728866‑M1/143‑100 (MQ=255)
                                                                                                    tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacagccaccggaggtgcgtgaattctgggggtgttggatggaggtg                                    >  1:450255‑M1/1‑42 (MQ=255)
                                                                                                        aaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaag                                <  2:516209‑M1/143‑106 (MQ=255)
                                                                                                         aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagc                               >  1:658550‑M1/1‑37 (MQ=255)
                                                                                                                ccGCACTAGGCCCGTATATGGGTGAAGGTAagtgcaaagataatcggtgtttgttcgattgtctggctgtatgcgtgaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagttggaagcgcaggaa                        <  2:24478‑M1/143‑114 (MQ=255)
                                                                                                                           ccGTATTTTCGTGAAGGTAagtgcaaagataatcgagtctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac             <  2:152138‑M1/143‑125 (MQ=255)
                                                                                                                               tttttcgtGTAGGTTagtgcaaagataatcgattctttttcggttgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctac         <  2:17215‑M1/140‑129 (MQ=255)
                                                                                                                                 atTCGTGAAGGTAagtgcaaatatattcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacag       <  2:722394‑M1/143‑131 (MQ=255)
                                                                                                                                      tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattccggggctggtggatggagctggaagcgcaggaatcccgttttacctgcagttacc  <  1:632888‑M1/143‑136 (MQ=255)
                                                                                                                                             |                                                                                                                                       
TGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT  >  NC_000913/257766‑258042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: